
Carg05954 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACGTAAGATTTCTGAAACAAGCCAAGACTGTTCATGTGTTTTTGTTAAAATCGAAATTTTAAAACCATGATTCTCTGGTCTTGCTTAATATTGTTGCTCACGCTCACTCGAAATGCTCCGATATTGGTGCTGCATGCCACCTGTTTGATCAAATGTTCCAGAGAAACATCTTTTCTTTGATTGGCTGATAATGATTTTTTCCTCGATTGGTTTTGAGTAATTCTGTGAAATGCAGAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA ATGTCTTCTTCTTCCAGAATTCGGATTTATTTTCGTAATGGCTACAAATTTTTGACAGATAAGGAATTTAGCGTTAACGCCAACGCCTCCTGCGTGATTGTGTGGACAGTCAGGGAGTTTTTCCAGATCAGTTTGCGTATTCTTGTATCTTGGTTTGGAGACCATTATATTGGGCAAAATGGTTCATCCCAGATTGTTATTAGAGGCTTTGCATCTCTTTCTTTTGTGTATACTGCTCTTCTTAATATGTATGCAAGGTTACAAGAGATTCAGGATTCATTCAAGGTGTTTAACACCATGACTGAATTTAATGTAGTTTCGTGGAATGCCATGATCTCAGTGTTCACATTAAATGGTCTTTACTCAGAGGCATGTGATCATTTTCTCAGAATGAAGGGAGAAGGAGTAACACCCGATGCACAATCGTTTATTGGCATTGCAAAAGCTATGGATGTGTTAGGAGACGTGAGCAAGGCAAAAGAAGTTAGCCATTTTGCTTCATTGTTAGGTGTGGACTCCAATACTCTCGTTGATATGCATTCTAAATGTAGATCTTTGCAAGAGGCAGATCCATCTTTGACCCTCATTTTACAAATTGTCGGGTTAACGTCCCGCGGAATGCAATGA MSSSSRIRIYFRNGYKFLTDKEFSVNANASCVIVWTVREFFQISLRILVSWFGDHYIGQNGSSQIVIRGFASLSFVYTALLNMYARLQEIQDSFKVFNTMTEFNVVSWNAMISVFTLNGLYSEACDHFLRMKGEGVTPDAQSFIGIAKAMDVLGDVSKAKEVSHFASLLGVDSNTLVDMHSKCRSLQEADPSLTLILQIVGLTSRGMQ Homology
BLAST of Carg05954 vs. NCBI nr
Match: KAG7033277.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 411.8 bits (1057), Expect = 3.6e-111 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Carg05954 vs. NCBI nr
Match: KAG6602598.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 404.4 bits (1038), Expect = 5.7e-109 Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0
BLAST of Carg05954 vs. NCBI nr
Match: XP_022993736.1 (pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima]) HSP 1 Score: 193.7 bits (491), Expect = 1.5e-45 Identity = 101/138 (73.19%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Carg05954 vs. NCBI nr
Match: XP_023549692.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193.4 bits (490), Expect = 2.0e-45 Identity = 101/138 (73.19%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Carg05954 vs. NCBI nr
Match: XP_022939229.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata] >KAG6578466.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 191.0 bits (484), Expect = 1.0e-44 Identity = 99/138 (71.74%), Postives = 116/138 (84.06%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15 Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13 Identity = 41/138 (29.71%), Postives = 75/138 (54.35%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13 Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy Swiss-Prot
Match: O64705 (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2) HSP 1 Score: 76.3 bits (186), Expect = 4.7e-13 Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.2e-12 Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy TrEMBL
Match: A0A6J1JX63 (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucurbita maxima OX=3661 GN=LOC111489649 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 7.5e-46 Identity = 101/138 (73.19%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy TrEMBL
Match: A0A6J1FGJ6 (pentatricopeptide repeat-containing protein At3g16610-like OS=Cucurbita moschata OX=3662 GN=LOC111445205 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45 Identity = 99/138 (71.74%), Postives = 116/138 (84.06%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy TrEMBL
Match: A0A6J1BXL8 (pentatricopeptide repeat-containing protein At2g33680-like OS=Momordica charantia OX=3673 GN=LOC111006636 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44 Identity = 99/138 (71.74%), Postives = 114/138 (82.61%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy TrEMBL
Match: A0A5D3C2B1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001490 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43 Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0
BLAST of Carg05954 vs. ExPASy TrEMBL
Match: A0A5A7UEQ9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005280 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43 Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0
BLAST of Carg05954 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16 Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = 0
BLAST of Carg05954 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 82.4 bits (202), Expect = 4.7e-16 Identity = 42/141 (29.79%), Postives = 80/141 (56.74%), Query Frame = 0
BLAST of Carg05954 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.6e-14 Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0
BLAST of Carg05954 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.6e-14 Identity = 41/138 (29.71%), Postives = 75/138 (54.35%), Query Frame = 0
BLAST of Carg05954 vs. TAIR 10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 76.3 bits (186), Expect = 3.3e-14 Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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