Carg05901 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05901
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 21019422 .. 21020221 (-)
RNA-Seq ExpressionCarg05901
SyntenyCarg05901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCTGATCTGTGTTGTGATTGTGACATAAATTATTGGACCAATGGGATTTGGGTTCCCACCAAATACGAATTCTCTAATATCCCATTCGCCTCCGCCTCCGCTTTCTTTTTGCAAATTGCATTTTCTAGACTGGGTCCTCTTTGCTCCTATTTAATCTTTGACCCAACTGGAAATTACCATCACAACCGACGAAATTCATTCCGGGATCGCTGTTCTTCAGCCGACGAGGTCTAAGGAGTTCGTGTCTGTTCTGGGTTTTGCTTAATTTCATCAATTTCGTTTGTTTTCGCCCCTCTTTCGGAGTTCTGTAAGTTCTGGCTTATGGGATTTGGCTTTATCGTTGTTTCTATACTTTTGCCTGGTTGCTATGATCGGCGATTGATCGACTTCGCCGGAACTGTGCTGTGTTGCTATTTGATTCACTAGTCTAGGTTTAGATGCTTCTTGTGTCAATATAACAGTTTTTGTGTAGTTCATTTGGAGTTTATAGGAATACCCACTTGTTCGAATAAATGGATTAGTGAGTAGCAACTTCTTCTGGCAAAGTCGTTGACATTTGATGAAAGAAACAGAGATTATTGTGATTTACATAACCTATGGAATATGAACTGAAATGATTGATCGTATACGGATTATATGAATCACAGAATGCGGCTAAAGATTAGGACAATGTGTGGGATGAAAAGAATGATTCTTGTCCTTCCATGTGTGATATCATTCTTGAATATTGGATTTGGACATTCCATTTTTCATTTGCCTTTTACATAAACATTTTGCAGGCTGCTGATCAGTAA

mRNA sequence

ATGACGGCTGATCTGTGTTGTGATTGTGACATAAATTATTGGACCAATGGGATTTGGGTTCCCACCAAATACGAATTCTCTAATATCCCATTCGCCTCCGCCTCCGCTTTCTTTTTGCAAATTGCATTTTCTAGACTGGGTCCTCTTTGCTCCTATTTAATCTTTGACCCAACTGGAAATTACCATCACAACCGACGAAATTCATTCCGGGATCGCTGTTCTTCAGCCGACGAGGCTGCTGATCAGTAA

Coding sequence (CDS)

ATGACGGCTGATCTGTGTTGTGATTGTGACATAAATTATTGGACCAATGGGATTTGGGTTCCCACCAAATACGAATTCTCTAATATCCCATTCGCCTCCGCCTCCGCTTTCTTTTTGCAAATTGCATTTTCTAGACTGGGTCCTCTTTGCTCCTATTTAATCTTTGACCCAACTGGAAATTACCATCACAACCGACGAAATTCATTCCGGGATCGCTGTTCTTCAGCCGACGAGGCTGCTGATCAGTAA

Protein sequence

MTADLCCDCDINYWTNGIWVPTKYEFSNIPFASASAFFLQIAFSRLGPLCSYLIFDPTGNYHHNRRNSFRDRCSSADEAADQ
Homology
[Close]
BLAST of Carg05901 vs. NCBI nr
Match: KAG7033224.1 (hypothetical protein SDJN02_07278, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 4.1e-42
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MTADLCCDCDINYWTNGIWVPTKYEFSNIPFASASAFFLQIAFSRLGPLCSYLIFDPTGN 60
          MTADLCCDCDINYWTNGIWVPTKYEFSNIPFASASAFFLQIAFSRLGPLCSYLIFDPTGN
Sbjct: 1  MTADLCCDCDINYWTNGIWVPTKYEFSNIPFASASAFFLQIAFSRLGPLCSYLIFDPTGN 60

Query: 61 YHHNRRNSFRDRCSSADEAADQ 83
          YHHNRRNSFRDRCSSADEAADQ
Sbjct: 61 YHHNRRNSFRDRCSSADEAADQ 82

The following BLAST results are available for this feature:
BLAST of Carg05901 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033224.14.1e-42100.00hypothetical protein SDJN02_07278, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05901 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05901 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05901 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05901-RACarg05901-RAmRNA