Carg05749 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05749
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 4203652 .. 4204338 (-)
RNA-Seq Expression	Carg05749
Synteny	Carg05749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGGTTTCAAGCTCTGTTCCGAGATGCAATCTCCTCCAACTCTTCGCCAAGTTCTTCCGTTTCATCGAGTTCTGCTTTCTACTGGTTTTCATCTCCTGGACTCTCTCTAGGCTTCCGATCGCCGTCAGAATCTCCAGCGAGTATTTCGGAAAAATCCTCGGCTTCATCGCGAGTCCTCTCTTCGGATTCCTCCTCTGTAACGCCATCATCGTCGCACTCGTAGCAAAACCTAGCCAATTCTCAGGCCACAGCGCTGAAACCGAACGGATTTACGAAAACCTAATTGAAAAATCCGGAAGTCGCGACCTACCTGATTCGCTCGCGGAACGCGATTCTTCAATCGCAGAGGAGGTGGAGATTGTGTACCAGGATAAACAGATCATCGTGGAGTCGGAATCAGTAGTAGATCATCCGAAAGTGATTTTGAGGAGTTTATCGGAGAAACTTACGCGAGAATGCGTGACGACACAGAGTGAGAAGCTTCGGCGATCGGAGACGGAGAAGTGCCGGAATCTGGAGCATTCTCACGACATTTTGTTCTTCCAGGAAGATTTGAGTAATGAAGAATTTCAGAAGAAGATTGAAGCGTTCATTGCGAAAGAGAAGAAGTTTCGTCGGGAAGAATCTTGCGCCATTGTACTCCGCTGTGACGGTTAA

mRNA sequence

ATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGGTTTCAAGCTCTGTTCCGAGATGCAATCTCCTCCAACTCTTCGCCAAGTTCTTCCGTTTCATCGAGTTCTGCTTTCTACTGGTTTTCATCTCCTGGACTCTCTCTAGGCTTCCGATCGCCGTCAGAATCTCCAGCGAGTATTTCGGAAAAATCCTCGGCTTCATCGCGAGTCCTCTCTTCGGATTCCTCCTCTGTAACGCCATCATCGTCGCACTCGTAGCAAAACCTAGCCAATTCTCAGGCCACAGCGCTGAAACCGAACGGATTTACGAAAACCTAATTGAAAAATCCGGAAGTCGCGACCTACCTGATTCGCTCGCGGAACGCGATTCTTCAATCGCAGAGGAGGTGGAGATTGTGTACCAGGATAAACAGATCATCGTGGAGTCGGAATCAGTAGTAGATCATCCGAAAGTGATTTTGAGGAGTTTATCGGAGAAACTTACGCGAGAATGCGTGACGACACAGAGTGAGAAGCTTCGGCGATCGGAGACGGAGAAGTGCCGGAATCTGGAGCATTCTCACGACATTTTGTTCTTCCAGGAAGATTTGAGTAATGAAGAATTTCAGAAGAAGATTGAAGCGTTCATTGCGAAAGAGAAGAAGTTTCGTCGGGAAGAATCTTGCGCCATTGTACTCCGCTGTGACGGTTAA

Coding sequence (CDS)

ATGGATTTCTTCTTCTTCGACAAAGCAGAGAAGGTTTCAAGCTCTGTTCCGAGATGCAATCTCCTCCAACTCTTCGCCAAGTTCTTCCGTTTCATCGAGTTCTGCTTTCTACTGGTTTTCATCTCCTGGACTCTCTCTAGGCTTCCGATCGCCGTCAGAATCTCCAGCGAGTATTTCGGAAAAATCCTCGGCTTCATCGCGAGTCCTCTCTTCGGATTCCTCCTCTGTAACGCCATCATCGTCGCACTCGTAGCAAAACCTAGCCAATTCTCAGGCCACAGCGCTGAAACCGAACGGATTTACGAAAACCTAATTGAAAAATCCGGAAGTCGCGACCTACCTGATTCGCTCGCGGAACGCGATTCTTCAATCGCAGAGGAGGTGGAGATTGTGTACCAGGATAAACAGATCATCGTGGAGTCGGAATCAGTAGTAGATCATCCGAAAGTGATTTTGAGGAGTTTATCGGAGAAACTTACGCGAGAATGCGTGACGACACAGAGTGAGAAGCTTCGGCGATCGGAGACGGAGAAGTGCCGGAATCTGGAGCATTCTCACGACATTTTGTTCTTCCAGGAAGATTTGAGTAATGAAGAATTTCAGAAGAAGATTGAAGCGTTCATTGCGAAAGAGAAGAAGTTTCGTCGGGAAGAATCTTGCGCCATTGTACTCCGCTGTGACGGTTAA

Protein sequence

MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFGKILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAERDSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG

Homology

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BLAST of Carg05749 vs. NCBI nr
Match: KAG7015317.1 (hypothetical protein SDJN02_22952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER
Sbjct: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 229
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 228

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BLAST of Carg05749 vs. NCBI nr
Match: KAG6577225.1 (hypothetical protein SDJN03_24799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 227/228 (99.56%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 229
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 228

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BLAST of Carg05749 vs. NCBI nr
Match: XP_022929278.1 (uncharacterized protein LOC111435910 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFR IEFCFLLVF+SWTLSRLPIAVRISSEYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRLIEFCFLLVFLSWTLSRLPIAVRISSEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 229
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 228

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BLAST of Carg05749 vs. NCBI nr
Match: XP_023552883.1 (uncharacterized protein LOC111810408 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.6 bits (1098), Expect = 6.9e-116
Identity = 223/228 (97.81%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVF+SWT SRLPIAVRISSEYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFLSWTFSRLPIAVRISSEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSG+SAETERIYENLIEKSGSRDLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGYSAETERIYENLIEKSGSRDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 229
           NLEHSHDILFFQEDLSNE+FQKKIEAFIAKEKKFRREESCAIVLRCDG
Sbjct: 181 NLEHSHDILFFQEDLSNEDFQKKIEAFIAKEKKFRREESCAIVLRCDG 228

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BLAST of Carg05749 vs. NCBI nr
Match: XP_022985131.1 (uncharacterized protein LOC111483214 [Cucurbita maxima])

HSP 1 Score: 414.1 bits (1063), Expect = 8.0e-112
Identity = 216/222 (97.30%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRF+EFCFLLVF+SWTLSRLPIAVRIS EYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFVEFCFLLVFLSWTLSRLPIAVRISGEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGS DLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSNDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAE+VEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEDVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI 223
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI 222

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BLAST of Carg05749 vs. ExPASy TrEMBL
Match: A0A6J1ERL9 (uncharacterized protein LOC111435910 OS=Cucurbita moschata OX=3662 GN=LOC111435910 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.2e-117
Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFR IEFCFLLVF+SWTLSRLPIAVRISSEYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRLIEFCFLLVFLSWTLSRLPIAVRISSEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 229
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIVLRCDG 228

[Close]

BLAST of Carg05749 vs. ExPASy TrEMBL
Match: A0A6J1J794 (uncharacterized protein LOC111483214 OS=Cucurbita maxima OX=3661 GN=LOC111483214 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.8e-112
Identity = 216/222 (97.30%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRF+EFCFLLVF+SWTLSRLPIAVRIS EYFG
Sbjct: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFVEFCFLLVFLSWTLSRLPIAVRISGEYFG 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSRDLPDSLAER 120
           K+LGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGS DLPDSLAER
Sbjct: 61  KLLGFIASPLFGFLLCNAIIVALVAKPSQFSGHSAETERIYENLIEKSGSNDLPDSLAER 120

Query: 121 DSSIAEEVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180
           DSSIAE+VEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR
Sbjct: 121 DSSIAEDVEIVYQDKQIIVESESVVDHPKVILRSLSEKLTRECVTTQSEKLRRSETEKCR 180

Query: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI 223
           NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI
Sbjct: 181 NLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAI 222

[Close]

BLAST of Carg05749 vs. ExPASy TrEMBL
Match: A0A5D3CYU3 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005060 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76
Identity = 168/253 (66.40%), Postives = 198/253 (78.26%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEK+S+ +PRCNLLQ+F+KFFRF+E  FLL+ +SW  SRLPIA+RIS++YF 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFS--GHSAETERIYENLIEKSGS-RDLPDSL 120
           K+  FIA+PLFGFLLCNAIIVALVAKPSQFS    S +T+RIYE+LIEK+G+  DL DS 
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRPATSDQTDRIYEDLIEKTGTGSDLTDSA 120

Query: 121 AERDSSIAEEVEIVYQDKQII---------------------VESESVVDHPKVILRSLS 180
           +E      E  EIVYQDK+II                     +ES+S + H KVILRSLS
Sbjct: 121 SE------EVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLS 180

Query: 181 EKLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRR 229
           EKL RECV TQSEKLRRSETEKCRNLE+S+DIL++Q+DLS+EEFQ+KIEAFIAKEKKFRR
Sbjct: 181 EKLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRR 240

[Close]

BLAST of Carg05749 vs. ExPASy TrEMBL
Match: A0A1S3BT40 (uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76
Identity = 168/253 (66.40%), Postives = 198/253 (78.26%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEK+S+ +PRCNLLQ+F+KFFRF+E  FLL+ +SW  SRLPIA+RIS++YF 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRFLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFS--GHSAETERIYENLIEKSGS-RDLPDSL 120
           K+  FIA+PLFGFLLCNAIIVALVAKPSQFS    S +T+RIYE+LIEK+G+  DL DS 
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRPATSDQTDRIYEDLIEKTGTGSDLTDSA 120

Query: 121 AERDSSIAEEVEIVYQDKQII---------------------VESESVVDHPKVILRSLS 180
           +E      E  EIVYQDK+II                     +ES+S + H KVILRSLS
Sbjct: 121 SE------EVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLGHSKVILRSLS 180

Query: 181 EKLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRR 229
           EKL RECV TQSEKLRRSETEKCRNLE+S+DIL++Q+DLS+EEFQ+KIEAFIAKEKKFRR
Sbjct: 181 EKLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRR 240

[Close]

BLAST of Carg05749 vs. ExPASy TrEMBL
Match: A0A5A7TU70 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00800 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 167/253 (66.01%), Postives = 197/253 (77.87%), Query Frame = 0


Query: 1   MDFFFFDKAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFG 60
           MDFFFFDKAEK+S+ +PRCNLLQ+F+KFFR +E  FLL+ +SW  SRLPIA+RIS++YF 
Sbjct: 1   MDFFFFDKAEKLSTPIPRCNLLQIFSKFFRVLELSFLLLSLSWIFSRLPIALRISADYFT 60

Query: 61  KILGFIASPLFGFLLCNAIIVALVAKPSQFS--GHSAETERIYENLIEKSGS-RDLPDSL 120
           K+  FIA+PLFGFLLCNAIIVALVAKPSQFS    S +T+RIYE+LIE +G+  DL DS 
Sbjct: 61  KLFAFIATPLFGFLLCNAIIVALVAKPSQFSRPATSDQTDRIYEDLIENTGTGSDLTDSA 120

Query: 121 AERDSSIAEEVEIVYQDKQII---------------------VESESVVDHPKVILRSLS 180
           +E      E  EIVYQDK+II                     +ES+S +DH KVILRSLS
Sbjct: 121 SE------EVEEIVYQDKEIIAEGRVGSNYSTDCEIELKNTDLESDSGLDHSKVILRSLS 180

Query: 181 EKLTRECVTTQSEKLRRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRR 229
           EKL RECV TQSEKLRRSETEKCRNLE+S+DIL++Q+DLS+EEFQ+KIEAFIAKEKKFRR
Sbjct: 181 EKLNRECVKTQSEKLRRSETEKCRNLEYSNDILYYQDDLSSEEFQRKIEAFIAKEKKFRR 240

[Close]

BLAST of Carg05749 vs. TAIR 10
Match: AT5G66440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 7.1e-26
Identity = 101/258 (39.15%), Postives = 138/258 (53.49%), Query Frame = 0


Query: 1   MDFFFFD--KAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEY 60
           MD F FD  KAEK + ++ R N      +FFR  E C  L+FI WT S+LP  V+IS  +
Sbjct: 1   MDSFDFDNVKAEK-AKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAF 60

Query: 61  FGKILGFIASPLFGFLLCNAIIVALVAKPSQ---FSGHSAETERIYENLIEKSGSRDLPD 120
             +I   I++PLF FLL N+I+V L+ K S     +  SAETE IY+  +    +R  P 
Sbjct: 61  LRRIAAVISTPLFVFLLGNSIVVVLLTKSSDQTTTAVASAETE-IYQAFVRSVENRSKPS 120

Query: 121 SLAERDSSIAEEVEIVYQDKQIIV--------------------ESESVVDHPKVILRSL 180
                D  + E   IVY DKQ+IV                    +S+S   H KV  RS 
Sbjct: 121 -----DEDLTE--GIVYDDKQVIVTDLDSNPNLTVDENMPHVEIDSDS-SPHSKVYGRSK 180

Query: 181 SE----KLTRECVTTQSEKLRRSETEK-CRNLEHSHDI----LFFQEDLSNEEFQKKIEA 225
           S+    + +   +      L+RSETEK C+  E+  D      + ++DLSNEEFQK IEA
Sbjct: 181 SDVSGKQSSNMVMMMMKRSLQRSETEKFCKETENDDDSEEEKNYPEDDLSNEEFQKTIEA 240

[Close]

BLAST of Carg05749 vs. TAIR 10
Match: AT4G34560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 62/232 (26.72%), Postives = 107/232 (46.12%), Query Frame = 0


Query: 8   KAEKVSSSVPRCNLLQLFAKFFRFIEFCFLLVFISWTLSRLPIAVRISSEYFGKILGFIA 67
           K EK S  +     ++ F   FR  E   L++ IS  LS  P +V+IS + F +   F+ 
Sbjct: 10  KMEK-SRGILNFQAIRSFTSLFRLFELLLLVILIS-KLS-FP-SVKISGDIFKEAAVFLV 69

Query: 68  SPLFGFLLCNAIIVALVAKPSQFSGH--------SAETERIYENLIEKSGSRDLPDSLAE 127
           SP F F + NAI++ L+AK  ++S           A +  +Y+  + KS  +  P   A 
Sbjct: 70  SPRFVFFIGNAIVITLLAKSGRYSSSHEPSKTATEAASNDLYQEFLHKS-EKKKPVVYAT 129

Query: 128 RDSSIAEE---VEIVYQDKQIIVESESV-----VDHPKVILRSLSEKLTRECVTTQSEKL 187
           +   + +      + +   Q     E+V      +  K + R +SEK  R C + +   +
Sbjct: 130 KTEQLKKPSGGKRVSFGRSQSHKAFEAVKPLESTNGEKNMKRYVSEKHMRVCDSDKKVVV 189

Query: 188 RRSETEKCRNLEHSHDILFFQEDLSNEEFQKKIEAFIAKEKKFRREESCAIV 224
           R  + E               + +SNE+F+ KIEAFIA++K+ +++E   I+
Sbjct: 190 RVKKPE---------------DGMSNEQFRTKIEAFIARQKRIQKDEEHLII 221

The following BLAST results are available for this feature:

BLAST of Carg05749 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015317.1	7.4e-118	100.00	hypothetical protein SDJN02_22952, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577225.1	1.3e-117	99.56	hypothetical protein SDJN03_24799, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929278.1	1.1e-116	98.68	uncharacterized protein LOC111435910 [Cucurbita moschata]	[more]
XP_023552883.1	6.9e-116	97.81	uncharacterized protein LOC111810408 [Cucurbita pepo subsp. pepo]	[more]
XP_022985131.1	8.0e-112	97.30	uncharacterized protein LOC111483214 [Cucurbita maxima]	[more]

BLAST of Carg05749 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERL9	5.2e-117	98.68	uncharacterized protein LOC111435910 OS=Cucurbita moschata OX=3662 GN=LOC1114359...	[more]
A0A6J1J794	3.8e-112	97.30	uncharacterized protein LOC111483214 OS=Cucurbita maxima OX=3661 GN=LOC111483214...	[more]
A0A5D3CYU3	9.9e-76	66.40	Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS...	[more]
A0A1S3BT40	9.9e-76	66.40	uncharacterized protein LOC103493205 OS=Cucumis melo OX=3656 GN=LOC103493205 PE=...	[more]
A0A5A7TU70	3.8e-75	66.01	Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS...	[more]

BLAST of Carg05749 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66440.1	7.1e-26	39.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G34560.1	1.3e-06	26.72	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 197..217
None	No IPR available	PANTHER	PTHR33640:SF3	TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNIT	coord: 8..226
None	No IPR available	PANTHER	PTHR33640	TRANSMEMBRANE PROTEIN	coord: 8..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05749-RA	Carg05749-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity