Carg05675 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05675
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
LocationCarg_Chr16: 3706230 .. 3707421 (+)
RNA-Seq ExpressionCarg05675
SyntenyCarg05675
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAACAATCTGTTGCTGCGACTCTCCAGCAAACCAGGAATTCGTTTCTCCGGTCGGTGACAGCTGGACATGTCGTGTCATTATTTGATTCGGTCAAACTTCCACGTCGGTGTGAATTTTTTTTATTATTTATAGGAAACTTGTTTTCATTTTAAATTACCAATAAAATGATTAATTGCTATTAACACTGTTCACTAGAATTCCAGAACAAAAATCAATTCGCTAATCTTGTTTAATTATCTTAAATCAAGTAATTAAACTTCATAATCCATTCACATTGGATTATTTCAATATAAATTTAATTTTATATTTTTGTTCAAATCCGACAAACGCCACATGTCGGAATCTCATTGAAGGACCACATGCCCATTCCACGTGTGTAGGAGTTATACATGGACGAGAAATTCCCGGTAATTTTCACACCCAAAGCCACATTATGCCACCTTGTCCATTAGCATCCATATCAAAGAAAAAACTAGTGGCCTAGCTTTTTAGGCTTTTTATATATATATATATATATATATATATATGTATATATATGTCACGTTATGTGTATATATGTATGTGTGTGTTATATATAGTATGATATTGTTTACTTTGACCATAAACTCTTGTGATTTTATTTTTATTTTTTTTTAATAGGTCTCGTACTAATAGAGATGTACAAATCATCAAAATATATATACACATGCACGTGGGTACGTACGTATGTGTATATATATGCAAAATTTAATGGCTAATAATCTATACATACAAAATTTTTCACGTGCAAATAAAAAGGAAAAAGTATGGAGAACTTACAAATTTATCTAGATTCATTTAATCGAACTTTTGGATTTAGTGATGATTTAACTCGACAACCCTTTTTATCGGGTATCGGAATTGAAGAATTAGCATGATTCCGGGAACATTGGTTGGTGACCACATAGAGAGGATCTGGCTGTGGGTGACCCAAGAGTTAGCACCAGCCAAAGTTTATCCTAAAACCTCTATATAATAGAATATTTGGTTCATTCCTCCTCCGCCCACAGCCAGCAGCAACAGCCGCCAGCTCCGCCGCGTGGGAGGCATGTTGGAAGGCAAAGCAATCGTGGGCGAGACGGACATGCTGCAGGCGATGCAGCAGGACGCGTTGGACCTGGCGGCTAAGGCACTGGACAGGTTTGATGTGAACGGAAGCGACTGA

mRNA sequence

ATGGCGGCGAACAATCTGTTGCTGCGACTCTCCAGCAAACCAGGAATTCGTTTCTCCGCCAGCAGCAACAGCCGCCAGCTCCGCCGCGTGGGAGGCATGTTGGAAGGCAAAGCAATCGTGGGCGAGACGGACATGCTGCAGGCGATGCAGCAGGACGCGTTGGACCTGGCGGCTAAGGCACTGGACAGGTTTGATGTGAACGGAAGCGACTGA

Coding sequence (CDS)

ATGGCGGCGAACAATCTGTTGCTGCGACTCTCCAGCAAACCAGGAATTCGTTTCTCCGCCAGCAGCAACAGCCGCCAGCTCCGCCGCGTGGGAGGCATGTTGGAAGGCAAAGCAATCGTGGGCGAGACGGACATGCTGCAGGCGATGCAGCAGGACGCGTTGGACCTGGCGGCTAAGGCACTGGACAGGTTTGATGTGAACGGAAGCGACTGA

Protein sequence

MAANNLLLRLSSKPGIRFSASSNSRQLRRVGGMLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVNGSD
Homology
[Close]
BLAST of Carg05675 vs. NCBI nr
Match: KAG7015244.1 (hypothetical protein SDJN02_22878, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MAANNLLLRLSSKPGIRFSASSNSRQLRRVGGMLEGKAIVGETDMLQAMQQDALDLAAKA 60
          MAANNLLLRLSSKPGIRFSASSNSRQLRRVGGMLEGKAIVGETDMLQAMQQDALDLAAKA
Sbjct: 1  MAANNLLLRLSSKPGIRFSASSNSRQLRRVGGMLEGKAIVGETDMLQAMQQDALDLAAKA 60

Query: 61 LDRFDVNGSD 71
          LDRFDVNGSD
Sbjct: 61 LDRFDVNGSD 70

[Close]
BLAST of Carg05675 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. NCBI nr
Match: XP_022981659.1 (dynein light chain 2, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. NCBI nr
Match: XP_023525676.1 (dynein light chain 2, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDAL+LAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALELAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV
Sbjct: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 34

[Close]
BLAST of Carg05675 vs. ExPASy TrEMBL
Match: A0A1R3KBZ6 (Dynein light chain OS=Corchorus olitorius OX=93759 GN=COLO4_09487 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVN 68
          MLEGKA++GETDMLQAMQ+DALDLAAKALD FDVN
Sbjct: 1  MLEGKAVIGETDMLQAMQRDALDLAAKALDFFDVN 35

[Close]
BLAST of Carg05675 vs. ExPASy TrEMBL
Match: A0A6J1FDE1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKA++GETDMLQAMQQDALDLAAKALD FDV
Sbjct: 1  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDV 34

[Close]
BLAST of Carg05675 vs. ExPASy TrEMBL
Match: A0A022PUF4 (Dynein light chain OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016724mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVNGS 70
          MLEGKA+VGETDML+AMQQDALDLAAKALD FDV  S
Sbjct: 1  MLEGKAVVGETDMLEAMQQDALDLAAKALDFFDVTDS 37

[Close]
BLAST of Carg05675 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 33 MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDV 67
          MLEGKA++G+TDM Q M++DAL LA+KALD FDV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDV 34

The following BLAST results are available for this feature:
BLAST of Carg05675 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015244.11.9e-27100.00hypothetical protein SDJN02_22878, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607846.15.6e-08100.00hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022941140.15.6e-08100.00dynein light chain 2, cytoplasmic-like [Cucurbita moschata][more]
XP_022981659.15.6e-08100.00dynein light chain 2, cytoplasmic-like [Cucurbita maxima][more]
XP_023525676.11.6e-0797.06dynein light chain 2, cytoplasmic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg05675 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05675 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J2G72.7e-08100.00Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1[more]
A0A6J1FSQ12.7e-08100.00Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1[more]
A0A1R3KBZ62.3e-0788.57Dynein light chain OS=Corchorus olitorius OX=93759 GN=COLO4_09487 PE=3 SV=1[more]
A0A6J1FDE12.3e-0791.18Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1[more]
A0A022PUF43.0e-0786.49Dynein light chain OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016724mg PE=3 SV... [more]
BLAST of Carg05675 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G27360.13.0e-0770.59Dynein light chain type 1 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05675-RACarg05675-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0030286 dynein complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005874 microtubule
molecular_function GO:0045505 dynein intermediate chain binding
molecular_function GO:0051959 dynein light intermediate chain binding