Carg05634 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05634
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3478611 .. 3480085 (+)
RNA-Seq ExpressionCarg05634
SyntenyCarg05634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTACTAAAATAAAAATTGTGGCGAAAGCGAGGAGGATAACCCAACTTTTTTCGAGCCGAAAATTGCAGTGAGGTTCACGTTTTAGTGTCTACCAACTTGAGATCTCAATCACTCAAGAACACACCCACCTCTGGTTTCCCCTGTTTTTGTGGTTCATTTCGTTTTCTTCCCTTCTTGGCTGCGGATTTTGCTGATATTCTCTTCTGGGTTTGTTCTATTTCTCACTCTCATAATCGGTGAAGTGTTTTTTCTTTTGATTTTTTCAGTTTCTGTTGATTAATAGATATCGATTATGATTCTTTTGGGGTTTCTTTTGTTCTTGTGAAGTGATTTATGGTTTGATTCTTTCTTCTTTGGCACATCTTTTGAATGGTTTTGGTGAGTAACCTTTATTGGTGTTTGAAGCTCACTAGCTATGGCTGTTGATGTATTTAGTGAGGCTCCTTAAGCTTAATGGAATGATACCAATTGTGGGTTTCGTTTTTGTGGATAACTCCTAATCTTAATGGAATGATACCAATTGTGTGGGGCAGGAGGGTGTTTTCCCATGAAACTAATGCCTTATGGATAGCAAATATGGCTTCCTTCCTATGTATAGATGCCACTTTTGTTGGCAATGGCGCCTACCTATTTCGGTGAAAATGTGTGAGATCCCATTTCGGTTCGAGAGGGAACGAAGCATTCCTTATAAGGGTGTAAAAATCTCTCCCTAGTAGATGCGTTTTAAAACTTTGAGATGAAACCTAGAAGGGAAAGCCCGAGAACAATATCTGCTAGTGGTAGGATTGAGCTGTTACAAAATGATCCTTGTTATTTGCATCATTTGCTTGAGTTTATAACTCTTTCGAGTTTTGGTAGGAGACGTGAATTGTGTTCGTTAATGAGAGGTTTGATAGATTCTATATAGATCCTTTTGTGAATGCTTTTCTAACCTCTACCATCTTTTCCTTGCAAAAAACTCCCCCATTTCTGGATGAGGGACCTTCCCCATTGTTGTTTCATGTTTGTTAGCTTTTTGCTTTTCTAGAAACAGTTCAACCATTCCATTCTGTCACCGTCACTCTTTGTATGCCCACACCGGATATGAACCGAAATGTCTCACGACGTTTTAAACCCAGCTCAGGAACATACTCGTTCTGCTCCTTCCGTTCCTATGTCTTCTGGTTTTCTCCTCCCTGTATGATTCTCTAGTGGATTGATTATGAAATTGATGTCTCTGATCTTCAAGTAGAGCACAGGTTTCATGCTTTAACTTCAAGTATAAATTTATCCGCTCATGAGTTACCGAGTCTCGCACAGCTCTAATCAGTAGGATCGCCTGCGTTACGATCAATTCTTATCATTCGCTCTCTTTTTTTTCAGGAGAAGATACACTAGCAGGCTGTCAGATTACTCGAAACCTTGTCGTTTTTCACGGCAAGTCTCGAAGGTGTTCCTCCTTCCTCGTGGGAGATACTTGCTCACCTGA

mRNA sequence

ATGGATATTACTAAAATAAAAATTGTGGCGAAAGCGAGGAGGATAACCCAACTTTTTTCGAGCCGAAAATTGCAGAGAAGATACACTAGCAGGCTGTCAGATTACTCGAAACCTTGTCGTTTTTCACGGCAAGTCTCGAAGGTGTTCCTCCTTCCTCGTGGGAGATACTTGCTCACCTGA

Coding sequence (CDS)

ATGGATATTACTAAAATAAAAATTGTGGCGAAAGCGAGGAGGATAACCCAACTTTTTTCGAGCCGAAAATTGCAGAGAAGATACACTAGCAGGCTGTCAGATTACTCGAAACCTTGTCGTTTTTCACGGCAAGTCTCGAAGGTGTTCCTCCTTCCTCGTGGGAGATACTTGCTCACCTGA

Protein sequence

MDITKIKIVAKARRITQLFSSRKLQRRYTSRLSDYSKPCRFSRQVSKVFLLPRGRYLLT
Homology
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BLAST of Carg05634 vs. NCBI nr
Match: KAG7015204.1 (hypothetical protein SDJN02_22837, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MDITKIKIVAKARRITQLFSSRKLQRRYTSRLSDYSKPCRFSRQVSKVFLLPRGRYLLT 60
          MDITKIKIVAKARRITQLFSSRKLQRRYTSRLSDYSKPCRFSRQVSKVFLLPRGRYLLT
Sbjct: 1  MDITKIKIVAKARRITQLFSSRKLQRRYTSRLSDYSKPCRFSRQVSKVFLLPRGRYLLT 59

The following BLAST results are available for this feature:
BLAST of Carg05634 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015204.14.4e-22100.00hypothetical protein SDJN02_22837, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05634 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05634 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05634 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05634-RACarg05634-RAmRNA