Carg05488 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05488
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubby-like F-box protein
Location	Carg_Chr17: 1737428 .. 1740876 (+)
RNA-Seq Expression	Carg05488
Synteny	Carg05488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACAAAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCGGATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGAGTACGCTGGATTGCCCTAAGTTTCTTTGCTCTATAGCTTTCGATTCTTCCATTGTTGTTCATTAAGTTTACGGTTTCTTTTGATCGAGAATGATGTTGAATTCAGATGTTTTGAATGTTGTTTATGTGTACGCAAAAATTGATCCTGCGATCAATGCATTTTCAGCCTGGTCCATACTCCTAGATTTTTCTTTTTACGTCTGGAGGTACTTTTGCAGCCTGGTCCAAGGGATCATATTGTACGGTGTTTCATAAAGCGAAACAGCTCCAATCAGACCTATCATCTCTTCCTCAATTTGACAAATGGTTAGTGATTTATATGCTAAATTGAGGTTAAGCTAGGAATTGCGACTCTCCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTCCAAAAGGCCTCATTCCAACAGAGATAGGATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGGGACTCAACTCCCAATAATCCTCAAAAGCTTTGTCTGAATGGTTCATTTCTTAATCACAGCACTAACTGAGGATGGTAAATTTTTACTTGCTGCTCATAAATGGAAGCGCCCGACCTACACGGATTACGATATCTCGTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGAAATTGAGGTATGCTTGTTCTTGAAGGCTTCTGATGCCATTATTAGATCTTTGTTTTAGATTTCTGAGAGTTTTTTCTTTTTACCTTGTCTGGGAAAAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCGCCACATTCCGAAGCCAAGATCACGAAAAGTACGAAAAGCACGAAAAGCACGCAAGGTCTCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCATCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGTAATTCCAAGGCTATCGGATAACTGGCTTATGATTTATGGTTATTCTTTGTTTGGATGACTGCATTTGTTCTTTAGATGTCTAGCAAATGCTCAACAGTTCATGTGATTAACACGCAGGGGTCCGAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCCGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCTTTTTGGAGGTTGAATTCAGATACGGATAGCTTGATGTCTAAACCTTTGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCGGCTTCAATGCTGGTGTTTAAACTTCCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCGTCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGGTTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGATAGACATATCATTTAACAGGTAAAACTGTCATTAATTTCTAAGACTCTATTATAGTATTGCTATATACATACTTCACAATGTCATGTGCACAAACTAGGAGAAGAAGCCACATTTTATCTTCGATTTCTTTAATTCGAGTATGAAATGAATTCATATATTCATACGTTTTATCCCATGATATCATCTATTCCTTGCAATGCGTCGGTCTTGTCGATCTCTGTAAACTATTTTGCTCGAAAATGTTTTGTTTTCCAGTATGTACTCTGCATGATATTATGTTCTCAATTGTCGGTTTTTTGCAAGCTTGACATGTTATTAGTTCAAAGTTCGGTATCGCTGCTTGTACTCGAAACTGTTTTTCTCGAAATATCCCGTTCTTTATTGAATGTTCATGCTATAAGATCTTCCATTGATTCTTATTCCATAAACTATGCTTTGTGCTTATGATATCCCTTTCATTGATTATGGCCATGTCAATTGACTTCAACAATATCTACAATATCACTAGAGTAAGAACGACTTGACGTGCGACCGTACTCGAACACATAGATTGTACTCGAATACGATCTGTTATATAGATTGTACACGAACACGATCTGTTCTATAGGTTGTACACGAACACGATCTGTTCTATAGGTTGTACACGAACACGATCTGTTCTATAGTTGTACACGAACACGATCTGTTCTATAGGTTGTACACGAACACGATCTGTTCTATAAGTTGTACACGAACACGATCTGTTCTATAGGTTGTACACGAACACGATCTGTTCTATAGGTTGTACACGAACACGATCTGTTCTATAGATTGTACTCGAACACGATCTGTTCTATAGATTGTACTCGAACACGATCTGTAGATGGTACTGGTACACGATCTGTAGATGGTACTGGTACACGATCTGTAGATGGTACTGGCACACGATCTGTAGATGGTACTGGTACACGATCTGTAGATGGTACTGGTACACGATCTGTAGATGGTACTGGTACACGATCTGTAGATGGTACTGGTACACGATCTGTCGACAGATCTGTTCTACTGATTGTACTCGAACAGATCTGTAGACTGGTGCACTCGTACAGCGATCTGTTCTGTTGATTGCACTCGAACACGATCTGTTCTGTTGATTGCACTCGAACACGATCTGTTCTACCGATTGCACTCGAACACGATTTGTTCTATAGATTGTATTACCGTACCGTTTAGAACTATCAATCCTGAGTTTACTTTGTGATGCAGGGAAGGGATGCTCAGTTTGAAGGTCCACGAATGGCTTCTGGCAATAAAATCGTTCATAAATGGTTCTTGAAGACTTTTTATTTGATTATGATGTGAATATTTCTCCCAGTTTGTGTAAATAGTGATTTTTTATTTTTTATTTTTCAATTGAAGAAGTTGAATGGTAGTGGTTGACCGTTGAAATCAGCTATTCATTTTCGTTCCTTTAGGGTA

mRNA sequence

ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACAAAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCGGATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGACCTGGTCCAAGGGATCATATTGTACGGTGTTTCATAAAGCGAAACAGCTCCAATCAGACCTATCATCTCTTCCTCAATTTGACAAATGGTTAGTGATTTATATGCTAAATTGAGGTTAAGCTAGGAATTGCGACTCTCCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTCCAAAAGGCCTCATTCCAACAGAGATAGGATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGGGACTCAACTCCCAATAATCCTCAAAAGCTTTGTCTGAATGGTTCATTTCTTAATCACAGCACTAACTGAGGATGGTAAATTTTTACTTGCTGCTCATAAATGGAAGCGCCCGACCTACACGGATTACGATATCTCGTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCGCCACATTCCGAAGCCAAGATCACGAAAAGTACGAAAAGCACGAAAAGCACGCAAGGTCTCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCATCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCCGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCTTTTTGGAGGTTGAATTCAGATACGGATAGCTTGATGTCTAAACCTTTGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCGGCTTCAATGCTGGTGTTTAAACTTCCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCGTCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGGTTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGATAGACATATCATTTAACAGGGAAGGGATGCTCAGTTTGAAGGTCCACGAATGGCTTCTGGCAATAAAATCGTTCATAAATGGTTCTTGAAGACTTTTTATTTGATTATGATGTGAATATTTCTCCCAGTTTGTGTAAATAGTGATTTTTTATTTTTTATTTTTCAATTGAAGAAGTTGAATGGTAGTGGTTGACCGTTGAAATCAGCTATTCATTTTCGTTCCTTTAGGGTA

Coding sequence (CDS)

ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACAAAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCGGATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGACCTGGTCCAAGGGATCATATTGTACGGTGTTTCATAAAGCGAAACAGCTCCAATCAGACCTATCATCTCTTCCTCAATTTGACAAATGGTTAGTGATTTATATGCTAAATTGA

Protein sequence

MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLADFRYIWYGFELIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN

Homology

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BLAST of Carg05488 vs. NCBI nr
Match: KAG7013623.1 (Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.7 bits (901), Expect = 3.7e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
           MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR
Sbjct: 1   MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60

Query: 61  KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLADFRYIWYGFE 120
           KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLADFRYIWYGFE
Sbjct: 61  KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLADFRYIWYGFE 120

Query: 121 LIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN 175
           LIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN
Sbjct: 121 LIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN 174

[Close]

BLAST of Carg05488 vs. NCBI nr
Match: KAG6575047.1 (Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR
Sbjct: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. NCBI nr
Match: XP_023547699.1 (tubby-like F-box protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 2.2e-45
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLKRFFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEASWPLR
Sbjct: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEASWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. NCBI nr
Match: XP_022959037.1 (tubby-like F-box protein 3 [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-44
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLKRFFLDM SRSRPVVQDSSAPEPRDDME SGWANMPSELLRDIFMRIEESEASWPLR
Sbjct: 1  MSLKRFFLDMSSRSRPVVQDSSAPEPRDDMEHSGWANMPSELLRDIFMRIEESEASWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          +SVVACAGVCRSWR+ISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 RSVVACAGVCRSWRMISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. NCBI nr
Match: XP_023006224.1 (tubby-like F-box protein 3 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 5.4e-44
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLK FFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEA WPLR
Sbjct: 1  MSLKSFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEALWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. ExPASy Swiss-Prot
Match: Q8VY21 (Tubby-like F-box protein 3 OS=Arabidopsis thaliana OX=3702 GN=TULP3 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-24
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 11  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVC 70
           RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVC
Sbjct: 30  RSRSQRVVQDTSVPV--DAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVC 89

Query: 71  RSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV 107
           R+WR I KEIV   E+S +LTFPISLKQ     +LV
Sbjct: 90  RNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLV 123

[Close]

BLAST of Carg05488 vs. ExPASy Swiss-Prot
Match: Q9ZP59 (Tubby-like F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=TULP1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 13  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRS 72
           +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRS
Sbjct: 35  KSRGSVQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRS 94

Query: 73  WRIISKEIVLTLEVSGRLTFPISLKQ 99
           WR + KEIV + E+SG++TFP+SLKQ
Sbjct: 95  WRDMCKEIVQSPELSGKITFPVSLKQ 120

[Close]

BLAST of Carg05488 vs. ExPASy Swiss-Prot
Match: Q10LG8 (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-21
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 30  MEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGR 89
           M+QS WA +P ELLR++ +RIEESE  WP R+ VVACAGVCRSWR I+KEIV   E SG+
Sbjct: 47  MQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGK 106

Query: 90  LTFPISLKQ 99
           LTFPISLKQ
Sbjct: 107 LTFPISLKQ 115

[Close]

BLAST of Carg05488 vs. ExPASy Swiss-Prot
Match: Q6Z2G9 (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP5 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-20
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 19  QDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISK 78
           Q           +Q  WAN+P ELL D+  R+E SEA+WP R+ VVACA VCRSWR ++K
Sbjct: 52  QQQQLQRQEHQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTK 111

Query: 79  EIVLTLEVSGRLTFPISLKQ 99
           E+V TLE  GR+TFPISLKQ
Sbjct: 112 EVVKTLEECGRITFPISLKQ 131

[Close]

BLAST of Carg05488 vs. ExPASy Swiss-Prot
Match: Q6NPQ1 (Tubby-like F-box protein 11 OS=Arabidopsis thaliana OX=3702 GN=TULP11 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 1   MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSG----WANMPSELLRDIFMRIEESE-A 60
           M+L+   L+MRSR   VV D +A    D    S     W+ +P ELLR+I +R+E ++  
Sbjct: 1   MTLRSLILEMRSRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADGG 60

Query: 61  SWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV 107
            WP R+SVVACAGVCR WR++  E V+  E+S +LTFPISLKQ     +LV
Sbjct: 61  GWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLV 111

[Close]

BLAST of Carg05488 vs. ExPASy TrEMBL
Match: A0A6J1H3G5 (tubby-like F-box protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111460144 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.2e-44
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLKRFFLDM SRSRPVVQDSSAPEPRDDME SGWANMPSELLRDIFMRIEESEASWPLR
Sbjct: 1  MSLKRFFLDMSSRSRPVVQDSSAPEPRDDMEHSGWANMPSELLRDIFMRIEESEASWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          +SVVACAGVCRSWR+ISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 RSVVACAGVCRSWRMISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. ExPASy TrEMBL
Match: A0A6J1L1K1 (tubby-like F-box protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111499019 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.6e-44
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLK FFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEA WPLR
Sbjct: 1  MSLKSFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEALWPLR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Sbjct: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 98

[Close]

BLAST of Carg05488 vs. ExPASy TrEMBL
Match: A0A5A7SVJ4 (Tubby-like F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001220 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.1e-33
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP R
Sbjct: 1  MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWR I+KEIV T EVSGRLTFPIS+KQ
Sbjct: 61 KSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQ 98

[Close]

BLAST of Carg05488 vs. ExPASy TrEMBL
Match: A0A1S3C7G9 (Tubby-like F-box protein OS=Cucumis melo OX=3656 GN=LOC103497885 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.1e-33
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP R
Sbjct: 1  MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWR I+KEIV T EVSGRLTFPIS+KQ
Sbjct: 61 KSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQ 98

[Close]

BLAST of Carg05488 vs. ExPASy TrEMBL
Match: A0A0A0KCR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G072980 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLR 60
          MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP R
Sbjct: 1  MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFR 60

Query: 61 KSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ 99
          KSVVACAGVCRSWR I+KEIV T E+SGRLTFPIS+KQ
Sbjct: 61 KSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQ 98

[Close]

BLAST of Carg05488 vs. TAIR 10
Match: AT2G47900.1 (tubby like protein 3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 11  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVC 70
           RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVC
Sbjct: 30  RSRSQRVVQDTSVPV--DAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVC 89

Query: 71  RSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV 107
           R+WR I KEIV   E+S +LTFPISLKQ     +LV
Sbjct: 90  RNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLV 123

[Close]

BLAST of Carg05488 vs. TAIR 10
Match: AT2G47900.2 (tubby like protein 3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 11  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVC 70
           RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVC
Sbjct: 30  RSRSQRVVQDTSVPV--DAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVC 89

Query: 71  RSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV 107
           R+WR I KEIV   E+S +LTFPISLKQ     +LV
Sbjct: 90  RNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLV 123

[Close]

BLAST of Carg05488 vs. TAIR 10
Match: AT2G47900.3 (tubby like protein 3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 11  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVC 70
           RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVC
Sbjct: 30  RSRSQRVVQDTSVPV--DAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVC 89

Query: 71  RSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV 107
           R+WR I KEIV   E+S +LTFPISLKQ     +LV
Sbjct: 90  RNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLV 123

[Close]

BLAST of Carg05488 vs. TAIR 10
Match: AT1G76900.1 (tubby like protein 1 )

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-22
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 13  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRS 72
           +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRS
Sbjct: 35  KSRGSVQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRS 94

Query: 73  WRIISKEIVLTLEVSGRLTFPISLKQ 99
           WR + KEIV + E+SG++TFP+SLKQ
Sbjct: 95  WRDMCKEIVQSPELSGKITFPVSLKQ 120

[Close]

BLAST of Carg05488 vs. TAIR 10
Match: AT1G76900.2 (tubby like protein 1 )

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-22
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 13  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRS 72
           +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRS
Sbjct: 35  KSRGSVQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRS 94

Query: 73  WRIISKEIVLTLEVSGRLTFPISLKQ 99
           WR + KEIV + E+SG++TFP+SLKQ
Sbjct: 95  WRDMCKEIVQSPELSGKITFPVSLKQ 120

The following BLAST results are available for this feature:

BLAST of Carg05488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013623.1	3.7e-93	100.00	Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575047.1	2.6e-46	100.00	Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547699.1	2.2e-45	97.96	tubby-like F-box protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022959037.1	2.4e-44	95.92	tubby-like F-box protein 3 [Cucurbita moschata]	[more]
XP_023006224.1	5.4e-44	95.92	tubby-like F-box protein 3 [Cucurbita maxima]	[more]

BLAST of Carg05488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY21	2.2e-24	62.50	Tubby-like F-box protein 3 OS=Arabidopsis thaliana OX=3702 GN=TULP3 PE=1 SV=1	[more]
Q9ZP59	6.7e-21	55.81	Tubby-like F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=TULP1 PE=1 SV=1	[more]
Q10LG8	8.7e-21	69.57	Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=...	[more]
Q6Z2G9	4.3e-20	56.25	Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP5 PE=...	[more]
Q6NPQ1	1.3e-19	46.85	Tubby-like F-box protein 11 OS=Arabidopsis thaliana OX=3702 GN=TULP11 PE=2 SV=1	[more]

BLAST of Carg05488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3G5	1.2e-44	95.92	tubby-like F-box protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111460144 PE=3 SV...	[more]
A0A6J1L1K1	2.6e-44	95.92	tubby-like F-box protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111499019 PE=3 SV=1	[more]
A0A5A7SVJ4	6.1e-33	76.53	Tubby-like F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3C7G9	6.1e-33	76.53	Tubby-like F-box protein OS=Cucumis melo OX=3656 GN=LOC103497885 PE=3 SV=1	[more]
A0A0A0KCR9	1.3e-32	75.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G072980 PE=3 SV=1	[more]

BLAST of Carg05488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47900.1	1.6e-25	62.50	tubby like protein 3	[more]
AT2G47900.2	1.6e-25	62.50	tubby like protein 3	[more]
AT2G47900.3	1.6e-25	62.50	tubby like protein 3	[more]
AT1G76900.1	4.8e-22	55.81	tubby like protein 1	[more]
AT1G76900.2	4.8e-22	55.81	tubby like protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 27..83 e-value: 1.5E-5 score: 26.8
None	No IPR available	PANTHER	PTHR16517	TUBBY-RELATED	coord: 4..100
None	No IPR available	PANTHER	PTHR16517:SF119	TUBBY-LIKE F-BOX PROTEIN 3-RELATED	coord: 4..100
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 35..85 e-value: 4.2E-10 score: 39.2
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 30..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05488-RA	Carg05488-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding