Carg05406 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05406
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich protein 5-like
Location	Carg_Chr19: 935776 .. 936072 (-)
RNA-Seq Expression	Carg05406
Synteny	Carg05406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATAAGCTTAATTTGATGTTGATTATGGCTATGGCTGTGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAATTGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCGGTGGCTTCTCTGGCATTGGTGATAGCGGACTCCCCTTTGGAGGACTCGGAGGAGGCGGTGGCTTGGGCGGGATCGGCGGTGGCCTTGGCGGGTTCGGTGGGGTTGGCATCGGTGGCATCGGTGCCGGAGTTGGCGGGGTTGGTGGTGGATTTGTTAAGATTCCTTGA

mRNA sequence

ATGGCTAATAAGCTTAATTTGATGTTGATTATGGCTATGGCTGTGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAATTGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCGGTGGCTTCTCTGGCATTGGTGATAGCGGACTCCCCTTTGGAGGACTCGGAGGAGGCGGTGGCTTGGGCGGGATCGGCGGTGGCCTTGGCGGGTTCGGTGGGGTTGGCATCGGTGGCATCGGTGCCGGAGTTGGCGGGGTTGGTGGTGGATTTGTTAAGATTCCTTGA

Coding sequence (CDS)

ATGGCTAATAAGCTTAATTTGATGTTGATTATGGCTATGGCTGTGGCTGCATTTGCACTCCATGTTGCTGCAAGAACTGCCCCAATTGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCGGTGGCTTCTCTGGCATTGGTGATAGCGGACTCCCCTTTGGAGGACTCGGAGGAGGCGGTGGCTTGGGCGGGATCGGCGGTGGCCTTGGCGGGTTCGGTGGGGTTGGCATCGGTGGCATCGGTGCCGGAGTTGGCGGGGTTGGTGGTGGATTTGTTAAGATTCCTTGA

Protein sequence

MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP

Homology

[Close]

BLAST of Carg05406 vs. NCBI nr
Match: KAG6571569.1 (putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1   MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60
           MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG
Sbjct: 469 MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 528

Query: 61  GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 99
           GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP
Sbjct: 529 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 566

[Close]

BLAST of Carg05406 vs. NCBI nr
Match: KAG7011310.1 (hypothetical protein SDJN02_26214, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60
          MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG
Sbjct: 1  MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60

Query: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 99
          GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP
Sbjct: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 98

[Close]

BLAST of Carg05406 vs. NCBI nr
Match: XP_022963787.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60
          MANKLNLMLIMAMA+AAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG
Sbjct: 1  MANKLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60

Query: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 99
          GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP
Sbjct: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 98

[Close]

BLAST of Carg05406 vs. NCBI nr
Match: XP_023511522.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 3.7e-34
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60
          MANKLNLMLIMAMA+AAFALHVAARTAPIEAAKGLNDQKNFL GGFSGIGDSGLPFGGLG
Sbjct: 1  MANKLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLSGGFSGIGDSGLPFGGLG 60

Query: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 99
          GGGGLGG+GGGLGGFGGVGIGGIGAGVGGVGGGFVKIP
Sbjct: 61 GGGGLGGLGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 98

[Close]

BLAST of Carg05406 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 84/120 (70.00%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MAN-KLNLMLIMAMAVAAFALHVAARTAP-IEAAKGLNDQKNFLG----GGFSGIGDSGL 60
           MAN KLNLML+MAMA+AAFA HV ART P  +AAKGLNDQKNFL     GGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PF------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 99
           PF      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

[Close]

BLAST of Carg05406 vs. ExPASy TrEMBL
Match: A0A6J1HG59 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60
          MANKLNLMLIMAMA+AAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG
Sbjct: 1  MANKLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLGGGFSGIGDSGLPFGGLG 60

Query: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 99
          GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP
Sbjct: 61 GGGGLGGIGGGLGGFGGVGIGGIGAGVGGVGGGFVKIP 98

[Close]

BLAST of Carg05406 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 84/120 (70.00%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MAN-KLNLMLIMAMAVAAFALHVAARTAP-IEAAKGLNDQKNFLG----GGFSGIGDSGL 60
           MAN KLNLML+MAMA+AAFA HV ART P  +AAKGLNDQKNFL     GGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PF------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 99
           PF      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

[Close]

BLAST of Carg05406 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 85/119 (71.43%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   MAN-KLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLP 60
           MAN KLNLML+MAM  AA ALHVAARTAP EAAKGLNDQKNFL     GGFSGIGD GLP
Sbjct: 1   MANYKLNLMLVMAM--AALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLP 60

Query: 61  F------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 99
           F      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  FGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of Carg05406 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 85/119 (71.43%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   MAN-KLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLP 60
           MAN KLNLML+MAM  AA ALHVAARTAP EAAKGLNDQKNFL     GGFSGIGD GLP
Sbjct: 1   MANYKLNLMLVMAM--AALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLP 60

Query: 61  F------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 99
           F      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  FGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of Carg05406 vs. ExPASy TrEMBL
Match: A0A6J1ETH1 (acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLPF 60
           MAN+L L++ MAM + AFA  V ARTAP + AK ++DQKNF+     GGFSGIGDSGLPF
Sbjct: 42  MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 101

Query: 61  -------------------GGLGGGGGLGGIGGGLGGF-GGVGIGGIGAGVGGVGGG 94
                              GGLGGGGGLGG+GGG+GG  GG G+GG+G G+GG GGG
Sbjct: 102 GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGYGGG 158

[Close]

BLAST of Carg05406 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 10 IMAMAVAAFALHVAARTAPIEAAKGLNDQKNFL--GGGFSGIGDSGLPFGGLGGG----- 69
          I  +   A AL   AR  P+    GL+DQKN+L  GGG+SG+GD+GLPFGG+GGG     
Sbjct: 8  IFLVFALASALACGARNVPV----GLSDQKNYLGYGGGYSGVGDNGLPFGGVGGGVSGPG 67

Query: 70 -----GGLGGIGGGLGGFGGVGIGGIGAGV-GGVGGG 94
               GG GG GGGLG  GG+G GG G+G+ GG+GGG
Sbjct: 68 GNLGYGGFGGAGGGLG--GGLG-GGAGSGLGGGLGGG 97

The following BLAST results are available for this feature:

BLAST of Carg05406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571569.1	2.0e-35	100.00	putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011310.1	2.0e-35	100.00	hypothetical protein SDJN02_26214, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022963787.1	4.4e-35	98.98	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_023511522.1	3.7e-34	96.94	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652144.1	4.0e-20	70.00	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]

BLAST of Carg05406 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HG59	2.1e-35	98.98	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 S...	[more]
A0A0A0LEM4	1.9e-20	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	2.5e-20	71.43	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	2.5e-20	71.43	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]
A0A6J1ETH1	4.8e-11	55.56	acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1	[more]

BLAST of Carg05406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	3.0e-05	52.58	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR34463:SF14	GLYCINE-RICH PROTEIN LIKE	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05406-RA	Carg05406-RA	mRNA