Carg05398 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05398
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein FAM98A-like isoform X1
Location	Carg_Chr19: 1009109 .. 1012134 (+)
RNA-Seq Expression	Carg05398
Synteny	Carg05398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTTCCCCTTCCTCTTTCCTTTAGCTCAGAACCACACTCTCAAGCACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCTTCGTCTTCCTCTTCCCTCTCTCGCTTCCCGCCTTGCTGAAGAACCGCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGTATCATTTCACTGTTTTTGATATTGTTTACATCAGCTATTGTATCTCATTTCATTTTTTCTTTTTGGTGTGTTCGTCTTAATCTTTCTGTTTATACGTTGCGTCTGTTGTTTTTTGAACAATGAATCTATCTTATGACGTTAGGTTTGTGGATGCACTGGACTATTAGAAGATTGTCTTGGTTTTGGTTATTTTTTCTTAATGCTAGCCGACATTTATTGATTTGGTACACTTTCTGGTATATTGATTTCGTTTCTTGTACTTGCGAATTTTGAGGAATAGTTGCTCGCTGGCTGATACTCTGCCGTGTATGCATTGTATGTGGAAGCGTCTGTAAGCTTAATGCACGAGCTATGGTACTTCTTAACATGCGATAGCTCGTGAAATGTAATCTGTTCTGTTGATTGTCTACATTCCTTGTAGCTTTTTCTTCTAGCCTATCGTGAATTCTAGTTATATCGATATTTTTTCACTTTACCATATGAAAAGAATAAAGATACGGTTGAATTTATGCTTTATAGTTTATCTTGTATTCTCAGATCGAGTAATTACGCTAATGCAGTGATCATGTGGAGCTTGGTGTTACTGTATTATGTTGACGTGATGTTTGGCTCAGGTTTCTACTATTTGTACACATTTTTTAATATATAAATTTACCATCAAGATACAGCTACGTACTTCTCTTTCTTATAAAAAGAATCAAGTGCACTAGAGTTTATGGTTTACAATGTACTACCAGATCTATTCATTATGCTAATACAATGATCATGGCCAAATTGTCATTTCCTTATTCTTGGCTCACGGGTTTTTTTCAACTTGTTCGTACTATTTTTTTATTTGAAGAAGATAATTATTGATGTTATTCATGGGATCAAGTTTTTGTTATCTATTCAATTAGTAGATCGATTATTTCCTTATTTCTAATCATGCTGGCTAACTTGAGCATAGCTCAACTAGTCATTCATTTGGAGAGAATGAATTCCAGATCTTGGCTTTCGAAGTCCTCTGAGGGCATTTGCAGGAGTTCTTTTTTTAGGATTCTTTGTATACCTTCTCCCCTTCAAGGATCCACTGTGTTTTTTTAGGATTCTTTTTTTTTTTATCTGGAAAGTTTTGCATGGGAGAGTGTATACTGAAGACTGTATCCAAAGGCTTTCCTCCATGGTGTTGTGGCCTCAATAGTGTGTCATTTGTAGAAGATGGGGTGAGGAACTTGACCATTTACTTTACTTGACCCTTGGACTTTTTCTTGCTCGTAATCGAGGTTGTTGTTCGATGTTTGAGGATGTGTTCTTGAATCCTTCTTGTCATGAAAAGAAAGGGTTCTTTGGCAGTCTTATTTTTTGCTCTGTTGTAGGGCATTTGACTTGAGACTTGAGAGAAATAGTAGAATTTTTCGTGGAGTGGAGTGATTTGGGGAGAACTTTTGGATTACGATTAGGCTTAATGTCTCCCTGTGGATCTGCCCTATTGTTTGTGGGCTTGTTTTTTGTTCGCCCTTGTATATCCCTATAATGAAAGCTTGGTTTCTTATAAAAAAAGGTAAAAAAATTAACTATTCATTTGTGTATTGGATTACTAAACTAGTGGCTGGGATTGTCATCTGGGCTAACACCCGCTAGTGCCAAGCCTATTTATGCAAACCAAATTTAGAGAATGATTCAAGCCAGTCTTTCAACTTTTGGTTTTCAAACAAATAGAAACATAACAGATAACTATCATTTTCAATAAAAAAAATTGCTTAAAACAAACGAGAGAGACAGCCCACTTCTCAAGAGAACATTAAATCGATTAAGAGAGGAAGAGAGCTTGGGAGAGATAGTGCAAACATCCTCCCTTTTCAGGAGAGAGAGGAAGAGGAGAATGCTGATTTGAGTGATGAGAGAGGCTTTGTATAGTGTTTGACAGCAAGACCAAGTCCACCATCAAGCATGCTGAGTTTGAGTTAGAGGGTAAAAAGTTCCCAGTGGTATGGCTTTCGAGTGTCGGTTTAGTATAAAATGTGGATTTTTTATGTTAGAAAATCGTGGTTCCTAATAGCCTATTTATAAATTCTCTCTCTCTCTCTCTAATAAAAAGGTTTTTTCTCCCTTGTTTATTCATGTTTCTAAGCATGTGCTTACTGTCGGCTGAGAATGAATCTGTTCTATTTTGGTTTAATATATCACGTTTTCACTTTTTATAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGGTTTGAGTCCTTTACATTCTGCAACTGTGCATGTGTAACTTATTTTATAATTAACATGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACAATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAATTGATGTATGGGAGCCTATTGAAGAAGGTCTTGTACCGTAAGTTTTAATCTCTAAAAATCTCTGTTAATTGCCTGATGACGTCCTATGCAATTACTGCTGGTTGGTTTCTTTATGCTCATAGTCACGACTTAGCGTTGTTTGGATTGGTACTCTTTAGTTTGCAATTGCAGATTTTCTTACTATTATTGCTGTGGGCATGTAGCTTTAGCATACTCTTCTGCAGATATTTAAGTAATAATGTCTGACATATGATGCAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTGAAAGTCTAATCTG

mRNA sequence

CTCCTTTCCCCTTCCTCTTTCCTTTAGCTCAGAACCACACTCTCAAGCACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCTTCGTCTTCCTCTTCCCTCTCTCGCTTCCCGCCTTGCTGAAGAACCGCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTGAAAGTCTAATCTG

Coding sequence (CDS)

ATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAA

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK

Homology

[Close]

BLAST of Carg05398 vs. NCBI nr
Match: KAG7011318.1 (hypothetical protein SDJN02_26222 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILKCGDDSTRLNDINYPVKSRTK 89
          VSIAEILKCGDDSTRLNDINYPVKSRTK
Sbjct: 61 VSIAEILKCGDDSTRLNDINYPVKSRTK 88

[Close]

BLAST of Carg05398 vs. NCBI nr
Match: KAG6571577.1 (Protein SULFUR DEFICIENCY-INDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. NCBI nr
Match: XP_022963612.1 (protein FAM98A isoform X3 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. NCBI nr
Match: XP_023553962.1 (protein argonaute 18-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. NCBI nr
Match: XP_022967311.1 (protein FAM98A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPLNKNEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. ExPASy TrEMBL
Match: A0A6J1HFQ0 (protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. ExPASy TrEMBL
Match: A0A6J1HRM7 (protein FAM98A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466871 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPLNKNEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

[Close]

BLAST of Carg05398 vs. ExPASy TrEMBL
Match: A0A6J1EY76 (glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437293 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

[Close]

BLAST of Carg05398 vs. ExPASy TrEMBL
Match: A0A5A7UHR2 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00070 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.1e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

[Close]

BLAST of Carg05398 vs. ExPASy TrEMBL
Match: A0A5D3DWB1 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00450 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.1e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

[Close]

BLAST of Carg05398 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-25
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISKT
Sbjct: 1  MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          V+I+EILK
Sbjct: 61 VAISEILK 68

[Close]

BLAST of Carg05398 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 94.0 bits (232), Expect = 6.5e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+KT
Sbjct: 1  MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61 VSIAEILK 69
          V+I E++K
Sbjct: 61 VTIVELIK 68

[Close]

BLAST of Carg05398 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+
Sbjct: 1  MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61 VSIAEILK 69
          V+I E++K
Sbjct: 61 VTIVELIK 68

The following BLAST results are available for this feature:

BLAST of Carg05398 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011318.1	1.6e-39	100.00	hypothetical protein SDJN02_26222 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571577.1	6.8e-27	100.00	Protein SULFUR DEFICIENCY-INDUCED 1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022963612.1	6.8e-27	100.00	protein FAM98A isoform X3 [Cucurbita moschata]	[more]
XP_023553962.1	6.8e-27	100.00	protein argonaute 18-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022967311.1	3.4e-26	97.06	protein FAM98A-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg05398 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFQ0	3.3e-27	100.00	protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=...	[more]
A0A6J1HRM7	1.6e-26	97.06	protein FAM98A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466871 PE=4 ...	[more]
A0A6J1EY76	4.7e-26	97.06	glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7UHR2	8.1e-26	95.59	Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DWB1	8.1e-26	95.59	Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Carg05398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07030.1	5.2e-25	80.88	Alba DNA/RNA-binding protein	[more]
AT1G76010.1	6.5e-20	67.65	Alba DNA/RNA-binding protein	[more]
AT1G20220.1	7.2e-19	61.76	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 11..87 e-value: 5.2E-20 score: 73.1
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 15..68
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 19..68 e-value: 3.8E-16 score: 58.7
None	No IPR available	PANTHER	PTHR13516:SF3	ALBA DNA/RNA-BINDING PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR13516	RIBONUCLEASE P SUBUNIT P25	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05398-RA	Carg05398-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding