Carg05156 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05156
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit B-3
Location	Carg_Chr07: 3222712 .. 3223206 (+)
RNA-Seq Expression	Carg05156
Synteny	Carg05156

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATTTTTCAATCGCCAAAAGAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGATGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

mRNA sequence

ATGCTTTATTTTTCAATCGCCAAAAGAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGATGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Coding sequence (CDS)

ATGCTTTATTTTTCAATCGCCAAAAGAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGATGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Protein sequence

MLYFSIAKRNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK

Homology

[Close]

BLAST of Carg05156 vs. NCBI nr
Match: KAG6604917.1 (hypothetical protein SDJN03_02234, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026997.1 hypothetical protein SDJN02_11005, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 6.6e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVG 60
           MLYFSIAKRNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVG
Sbjct: 1   MLYFSIAKRNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVG 60

Query: 61  WGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPE 120
           WGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPE
Sbjct: 61  WGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPE 120

Query: 121 FEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK 165
           FEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK
Sbjct: 121 FEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK 164

[Close]

BLAST of Carg05156 vs. NCBI nr
Match: XP_038902685.1 (uncharacterized protein LOC120089322 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 6.4e-47
Identity = 115/177 (64.97%), Postives = 139/177 (78.53%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI--------EEEKKEVTFVSDR-----KSSPTAGGLLPESECA 60
           MLYFSI+KRNS PI+KF+        EE++K++TF SD       S+PT G LL ESECA
Sbjct: 46  MLYFSISKRNSLPIQKFVQQVQEEEEEEDQKKLTFFSDHLKSSSVSAPTTGDLLSESECA 105

Query: 61  DDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFED-E 120
           DDNFTTTE+SEV W  FD   +K    D+SD+GSISDEESLIEI+LPTGHYVSH+F+D +
Sbjct: 106 DDNFTTTEESEVEWPYFDHRSYKPNNPDRSDDGSISDEESLIEIALPTGHYVSHKFDDVD 165

Query: 121 EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           +E+ED MS  Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 166 DEDEDGMSFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 220

[Close]

BLAST of Carg05156 vs. NCBI nr
Match: XP_022985724.1 (uncharacterized protein LOC111483694 [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-45
Identity = 112/173 (64.74%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDN 60
           MLYFSI+K N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDN
Sbjct: 55  MLYFSISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 114

Query: 61  FTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDD 120
           FTTTE+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTGHYV+H+  D+++++DD
Sbjct: 115 FTTTEESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHK-SDDDDDKDD 174

Query: 121 MSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           MS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 175 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 225

[Close]

BLAST of Carg05156 vs. NCBI nr
Match: XP_022943897.1 (uncharacterized protein LOC111448485 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 3.5e-45
Identity = 112/174 (64.37%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDN 60
           MLYFSI+K N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDN
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 114

Query: 61  FTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEF-EDEEEEED 120
           FTTTE+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTGHYVSH+  +D++++ED
Sbjct: 115 FTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDED 174

Query: 121 DMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           DMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 175 DMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 227

[Close]

BLAST of Carg05156 vs. NCBI nr
Match: TYK11971.1 (uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 4.6e-45
Identity = 113/177 (63.84%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECAD 60
           MLYFSI+KR+S PI+KF+       EE++KE+TF SD       S+PT   LL ESECAD
Sbjct: 3   MLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECAD 62

Query: 61  DNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DE 120
           DNFTTTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE
Sbjct: 63  DNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDE 122

Query: 121 EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           +E+EDD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 123 DEDEDDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 177

[Close]

BLAST of Carg05156 vs. ExPASy TrEMBL
Match: A0A0A0KCP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 113/173 (65.32%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI-----EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDN 60
           MLYFSI+KRNS PI KF+     EE++K++TF SD       S+PT   LL ESECADDN
Sbjct: 3   MLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDN 62

Query: 61  FTTTEDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEE 120
           FTTTE+SEV W  FD RF K +   +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+E
Sbjct: 63  FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 122

Query: 121 DDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           DD+S  Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 123 DDISFRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 173

[Close]

BLAST of Carg05156 vs. ExPASy TrEMBL
Match: A0A6J1JE34 (uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 112/173 (64.74%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDN 60
           MLYFSI+K N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDN
Sbjct: 55  MLYFSISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 114

Query: 61  FTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDD 120
           FTTTE+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTGHYV+H+  D+++++DD
Sbjct: 115 FTTTEESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHK-SDDDDDKDD 174

Query: 121 MSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           MS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 175 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 225

[Close]

BLAST of Carg05156 vs. ExPASy TrEMBL
Match: A0A6J1FUA8 (uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC111448485 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.7e-45
Identity = 112/174 (64.37%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDN 60
           MLYFSI+K N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDN
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 114

Query: 61  FTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEF-EDEEEEED 120
           FTTTE+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTGHYVSH+  +D++++ED
Sbjct: 115 FTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDED 174

Query: 121 DMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           DMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 175 DMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 227

[Close]

BLAST of Carg05156 vs. ExPASy TrEMBL
Match: A0A5D3CJH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001550 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 113/177 (63.84%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECAD 60
           MLYFSI+KR+S PI+KF+       EE++KE+TF SD       S+PT   LL ESECAD
Sbjct: 3   MLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECAD 62

Query: 61  DNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DE 120
           DNFTTTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE
Sbjct: 63  DNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDE 122

Query: 121 EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           +E+EDD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 123 DEDEDDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 177

[Close]

BLAST of Carg05156 vs. ExPASy TrEMBL
Match: A0A1S3CMD0 (uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 113/177 (63.84%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MLYFSIAKRNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECAD 60
           MLYFSI+KR+S PI+KF+       EE++KE+TF SD       S+PT   LL ESECAD
Sbjct: 56  MLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECAD 115

Query: 61  DNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DE 120
           DNFTTTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE
Sbjct: 116 DNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDE 175

Query: 121 EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           +E+EDD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 176 DEDEDDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 230

[Close]

BLAST of Carg05156 vs. TAIR 10
Match: AT2G04480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 70  KTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLM 129
           KT ++ D+G+I D+ESLIE+SLP+GHY+ H +   +         + ++ +F      L 
Sbjct: 163 KTNEEDDDGAIPDDESLIELSLPSGHYLGHHYNSNKNH----LYIHNKVQDF-----RLF 222

Query: 130 ELLAEINDI-DEENLIEIDISMGSIKYSRFEI 161
           +LL EIND  +E+NLIEIDIS+GSIKYSRFEI
Sbjct: 223 DLLNEINDFTEEDNLIEIDISIGSIKYSRFEI 245

[Close]

BLAST of Carg05156 vs. TAIR 10
Match: AT5G35870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 73  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELL 132
           +  D+G+I DEESLIE+SLP+GHY+ H +     ++ D    Y  +P+F      L++L 
Sbjct: 116 NDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQ-DQKIMYNNIPDF-----RLIQLS 175

Query: 133 AEINDIDEENLIEIDISMGSIKYSRFEI 161
           AE  D   +NLIEIDIS+GSIK SRF+I
Sbjct: 176 AEYED---DNLIEIDISIGSIKCSRFQI 194

The following BLAST results are available for this feature:

BLAST of Carg05156 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604917.1	6.6e-84	100.00	hypothetical protein SDJN03_02234, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038902685.1	6.4e-47	64.97	uncharacterized protein LOC120089322 [Benincasa hispida]	[more]
XP_022985724.1	2.7e-45	64.74	uncharacterized protein LOC111483694 [Cucurbita maxima]	[more]
XP_022943897.1	3.5e-45	64.37	uncharacterized protein LOC111448485 [Cucurbita moschata]	[more]
TYK11971.1	4.6e-45	63.84	uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]	[more]

BLAST of Carg05156 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCP7	1.0e-45	65.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1	[more]
A0A6J1JE34	1.3e-45	64.74	uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694...	[more]
A0A6J1FUA8	1.7e-45	64.37	uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A5D3CJH9	2.2e-45	63.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMD0	2.2e-45	63.84	uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=...	[more]

BLAST of Carg05156 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04480.1	1.2e-14	48.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35870.1	1.9e-12	47.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	PANTHER	PTHR35708	GB\|AAD25831.1	coord: 22..160
None	No IPR available	PANTHER	PTHR35708:SF3	GB\|AAD25831.1	coord: 22..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05156-RA	Carg05156-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane