Carg05151 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05151
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger CCCH domain-containing protein 18-like
LocationCarg_Chr07: 3195988 .. 3196915 (+)
RNA-Seq ExpressionCarg05151
SyntenyCarg05151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATTGTATAATTCAATGTGTTATCAACACCGCCAAGTCCGACCTCGGAATCCCCGAAGTTCCAATTCCATATGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTTCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTATCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGGTATGTTCATGATGTTGTGGAGAAGGAGCCCCGTGTTGTGGTGCTTAGTGGAAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCTCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGCCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGTTCATTGCTCTGTTCTCTGTTTCTGCTACTCTGTTCTCTGTTTCTGCTACTCTGTTCTTTGTTTGTGCTACTCTGCTCATAATAACAAAACTAAACCCACTTTCTAATTCTACAAATTGCCATTTTCAGGCTCCATGGGAAGAATTCGATAATATTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTGTTCGACAGAATTCTTCCACTTTGGGCTGTTCGTCTCAGAATTTGGCTTTTTTTGATAGATGGGAAGAGGGCTGA

mRNA sequence

ATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATTGTATAATTCAATGTGTTATCAACACCGCCAAGTCCGACCTCGGAATCCCCGAAGTTCCAATTCCATATGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTTCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTATCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGGTATGTTCATGATGTTGTGGAGAAGGAGCCCCGTGTTGTGGTGCTTAGTGGAAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCTCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGCCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGCTCCATGGGAAGAATTCGATAATATTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTGTTCGACAGAATTCTTCCACTTTGGGCTGTTCGTCTCAGAATTTGGCTTTTTTTGATAGATGGGAAGAGGGCTGA

Coding sequence (CDS)

ATGGATAACGAAACGACGAAAATTGTGTACGAAAGAATCTGCAAATTGGAGCCTGAATATGGGTTGAAGATCGTCGGCTACGTTATGCTGAACACCAACGAACAGGACATGATCCGATTGGCGTTCAGCCCGGATTGTATAATTCAATGTGTTATCAACACCGCCAAGTCCGACCTCGGAATCCCCGAAGTTCCAATTCCATATGGTCGTGTTTCTTCTTCTCCATCCTCCCGCCTGTTCCTTCCCCACCAGACGTTCTCCGACTTCGCCCTGCAGAACCAGATGCAGTGGCTATCGCTGGACTCGGCAACTCCGGTGAGGCGAAGCCGCCGGAGGGAGTTTCCGGTGAAAGTTTGTCATTATTTCAGTAAAGGGTATTGCAAACATGGGAATACTTGCCGGTATGTTCATGATGTTGTGGAGAAGGAGCCCCGTGTTGTGGTGCTTAGTGGAAGAGCGCTGGATAAACTCGAAATCGAGATTGTCGAGCTTCTGAAATCTCGTGGTGGGCTGCCGATTTTGATTGCGGCTTTGCCGATGGTGTATCGTGAGCGGTATGGGCGCAGTCTTCTCGGCGATGGGTATCTTTCGAAGACTGGCCTTAGCCTCACGCGGCTGCTTGCTCTGTTGAGCCGCATTCGTGTTCTTGACGGGCTCCATGGGAAGAATTCGATAATATTAGCCGATGATTCTCCAAAACGCAATGAAATTTCTGAACAGAGTGTTCGACAGAATTCTTCCACTTTGGGCTGTTCGTCTCAGAATTTGGCTTTTTTTGATAGATGGGAAGAGGGCTGA

Protein sequence

MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLGIPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCHYFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQSVRQNSSTLGCSSQNLAFFDRWEEG
Homology
BLAST of Carg05151 vs. NCBI nr
Match: KAG7026992.1 (Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 532.3 bits (1370), Expect = 2.3e-147
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLGCSSQNLAFFDRWEEG 266
           SVRQNSSTLGCSSQNLAFFDRWEEG
Sbjct: 241 SVRQNSSTLGCSSQNLAFFDRWEEG 265

BLAST of Carg05151 vs. NCBI nr
Match: XP_022947526.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita moschata])

HSP 1 Score: 514.2 bits (1323), Expect = 6.6e-142
Identity = 258/263 (98.10%), Postives = 259/263 (98.48%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLGCSSQNLAFFDRWE 264
           SVRQNSSTLGCSSQNLA    +E
Sbjct: 241 SVRQNSSTLGCSSQNLAHSSAFE 263

BLAST of Carg05151 vs. NCBI nr
Match: XP_022971078.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita maxima])

HSP 1 Score: 508.4 bits (1308), Expect = 3.6e-140
Identity = 256/257 (99.61%), Postives = 256/257 (99.61%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLGCSSQNLA 258
           SVRQNSSTLGCSSQNLA
Sbjct: 241 SVRQNSSTLGCSSQNLA 257

BLAST of Carg05151 vs. NCBI nr
Match: KAG6604911.1 (Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 499.2 bits (1284), Expect = 2.2e-137
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLG 251
           SVRQNSSTLG
Sbjct: 241 SVRQNSSTLG 250

BLAST of Carg05151 vs. NCBI nr
Match: XP_023533200.1 (zinc finger CCCH domain-containing protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 240/243 (98.77%), Postives = 240/243 (98.77%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDG HGKNSIIL DDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGPHGKNSIILTDDSPKRNEISEQ 240

Query: 241 SVR 244
           S R
Sbjct: 241 SER 243

BLAST of Carg05151 vs. ExPASy Swiss-Prot
Match: Q9SJ41 (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-41
Identity = 120/320 (37.50%), Postives = 165/320 (51.56%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDCIIQCVINTAKSDLG- 63
           E+  +V+ RI +LEPE   KI GY++L      +DMIRLAF PD ++  VIN  K +L  
Sbjct: 5   ESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKYELAR 64

Query: 64  ---------IPEVPIP-YGRVSSS---------PSSRLFLPHQTFSDFALQNQMQWLSLD 123
                       +P P +G  + S         P    F  + T  D  LQN +Q+L+ +
Sbjct: 65  NSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMD-TLQNNLQFLNFE 124

Query: 124 -----------------SATPVRRSRRR----EFPVKVCHYFSKGYCKHGNTCRYVHDVV 183
                               P+R SRR     EFPVK+CHYF+KG+CKHGN CRY H  +
Sbjct: 125 DPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQI 184

Query: 184 EKEPRVV---------------VLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRER 243
             E                   V+S  +L+KLE EI+ELLK R G PI IA+LPM+Y E+
Sbjct: 185 IPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEK 244

Query: 244 YGRSLLGDGYLS------KTGLSLTRLLA-LLSRIRVLDGLHGKNSIILADDSPKRNEIS 259
           YGR+L  +GYL+      K G SLT+LLA L + IR++D  HG++S+ILA+D+ K  E +
Sbjct: 245 YGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYT 304

BLAST of Carg05151 vs. ExPASy Swiss-Prot
Match: Q6ZK57 (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.9e-23
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 0

Query: 119 CHYFSKGYCKHGNTCRYVH---------------DVVEKEPRVVVLSGRALDKLEIEIVE 178
           CHYFSKG CK+G  C Y H               DV   +P  V  +  +L+ LE+EI E
Sbjct: 266 CHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGV--TPGSLETLEMEITE 325

Query: 179 LLKSRGGLPILIAALPMVYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLD 234
           LL SR G P+ IA+LP +Y E+YG+ L  DGYL+      K G SLTRLL+ L++IRV++
Sbjct: 326 LLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIE 385

BLAST of Carg05151 vs. ExPASy Swiss-Prot
Match: Q84ZT0 (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-13
Identity = 72/240 (30.00%), Postives = 115/240 (47.92%), Query Frame = 0

Query: 26  GYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLGIPEVPIPYGRVSSSPS--------S 85
           GY++  ++   + + A SPD  ++ + +      G  E+P+ Y R     S         
Sbjct: 68  GYILSTSSYPQIRQYAASPDEHLRSLPSLLPPPPG-QELPLAYLRAQRQSSGNYRGIQAQ 127

Query: 86  RLFLPHQTFS-------DFALQNQMQWLSLDSATPVRRSRRREFP-------VKVCHY-F 145
           R  L  QT +          L+ ++Q LS+   +P         P        K CH+ F
Sbjct: 128 RRPLIDQTGALQSSFPESICLKEELQSLSMPRNSPNAGRNLVGHPHSSSKSSSKPCHFHF 187

Query: 146 SKGYCKHGNTCRYVHDVVEK--EPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 205
            +GYCK G  C++ H  V +   PR  V    +L KL++EI ELL      P+ +  LP 
Sbjct: 188 FRGYCKKGVNCQFFHGSVPELHNPR-QVHPFASLSKLDMEIRELLIGIPP-PVAVDRLPS 247

Query: 206 VYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKR 235
           +Y E+YG+ L  DG+L+      +TG SLT LL  L+ IRV++  HG+  ++L +D+ K+
Sbjct: 248 MYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARKK 304

BLAST of Carg05151 vs. ExPASy Swiss-Prot
Match: Q9SV09 (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-11
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

BLAST of Carg05151 vs. ExPASy Swiss-Prot
Match: Q0D3J9 (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-07
Identity = 28/87 (32.18%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 4  ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI- 63
          E TK+V+ RI  L+P++  KI+G++++  + E++MIRLAF P+ ++  V+  A+ +LG+ 
Sbjct: 5  EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLL 64

Query: 64 ----PEVPIPYGRVSSSPSSRLFLPHQ 85
              P  P      +++  S   L  Q
Sbjct: 65 PASGPGTPTSVAAAAAAAHSPFMLSRQ 91

BLAST of Carg05151 vs. ExPASy TrEMBL
Match: A0A6J1G6P3 (zinc finger CCCH domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111451368 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.2e-142
Identity = 258/263 (98.10%), Postives = 259/263 (98.48%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLGCSSQNLAFFDRWE 264
           SVRQNSSTLGCSSQNLA    +E
Sbjct: 241 SVRQNSSTLGCSSQNLAHSSAFE 263

BLAST of Carg05151 vs. ExPASy TrEMBL
Match: A0A6J1I5S7 (zinc finger CCCH domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111469855 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.7e-140
Identity = 256/257 (99.61%), Postives = 256/257 (99.61%), Query Frame = 0

Query: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLG 60
           MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPD IIQCVINTAKSDLG
Sbjct: 1   MDNETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDGIIQCVINTAKSDLG 60

Query: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120
           IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH
Sbjct: 61  IPEVPIPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDSATPVRRSRRREFPVKVCH 120

Query: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180
           YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM
Sbjct: 121 YFSKGYCKHGNTCRYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPM 180

Query: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240
           VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ
Sbjct: 181 VYRERYGRSLLGDGYLSKTGLSLTRLLALLSRIRVLDGLHGKNSIILADDSPKRNEISEQ 240

Query: 241 SVRQNSSTLGCSSQNLA 258
           SVRQNSSTLGCSSQNLA
Sbjct: 241 SVRQNSSTLGCSSQNLA 257

BLAST of Carg05151 vs. ExPASy TrEMBL
Match: A0A6J1CFC6 (zinc finger CCCH domain-containing protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011175 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 136/288 (47.22%), Postives = 181/288 (62.85%), Query Frame = 0

Query: 3   NETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI 62
           +++TK+VYERI KLEPEY  KI+GY++L+ + E DMIR+AFSPD +IQ +++ AKS+LGI
Sbjct: 4   SKSTKVVYERIHKLEPEYVSKIIGYLLLHGHGEHDMIRVAFSPDSVIQFLVDKAKSELGI 63

Query: 63  PEVPIP--------YGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDS-----ATPV-- 122
           PE+  P          R+  SPS   +       D++LQ++MQ+++L+        PV  
Sbjct: 64  PEIAAPAPADPYLQLSRLIPSPSPAAYSDLVVSEDYSLQSRMQFMTLEEQLESLMNPVGV 123

Query: 123 ---------------RRSRR----REFPVKVCHYFSKGYCKHGNTCRYVH---------- 182
                          RRSRR     EFPVKVCHYFSKGYCKHGN CRY H          
Sbjct: 124 EFGSNWYVPEPPLGLRRSRRSPSVAEFPVKVCHYFSKGYCKHGNNCRYFHVQPVAVAESG 183

Query: 183 -DVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYL 239
            D    E +++V  G  L+KLE+EI+ELLKSR G PI IA+LPM+Y E+YGR+L  DGYL
Sbjct: 184 IDQFGNEEQIIVSPG-PLEKLEMEIIELLKSRRGAPISIASLPMIYYEKYGRNLQADGYL 243

BLAST of Carg05151 vs. ExPASy TrEMBL
Match: A0A6J1CFZ3 (zinc finger CCCH domain-containing protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011175 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 136/288 (47.22%), Postives = 181/288 (62.85%), Query Frame = 0

Query: 3   NETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI 62
           +++TK+VYERI KLEPEY  KI+GY++L+ + E DMIR+AFSPD +IQ +++ AKS+LGI
Sbjct: 4   SKSTKVVYERIHKLEPEYVSKIIGYLLLHGHGEHDMIRVAFSPDSVIQFLVDKAKSELGI 63

Query: 63  PEVPIP--------YGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSLDS-----ATPV-- 122
           PE+  P          R+  SPS   +       D++LQ++MQ+++L+        PV  
Sbjct: 64  PEIAAPAPADPYLQLSRLIPSPSPAAYSDLVVSEDYSLQSRMQFMTLEEQLESLMNPVGV 123

Query: 123 ---------------RRSRR----REFPVKVCHYFSKGYCKHGNTCRYVH---------- 182
                          RRSRR     EFPVKVCHYFSKGYCKHGN CRY H          
Sbjct: 124 EFGSNWYVPEPPLGLRRSRRSPSVAEFPVKVCHYFSKGYCKHGNNCRYFHVQPVAVAESG 183

Query: 183 -DVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGDGYL 239
            D    E +++V  G  L+KLE+EI+ELLKSR G PI IA+LPM+Y E+YGR+L  DGYL
Sbjct: 184 IDQFGNEEQIIVSPG-PLEKLEMEIIELLKSRRGAPISIASLPMIYYEKYGRNLQADGYL 243

BLAST of Carg05151 vs. ExPASy TrEMBL
Match: A0A6J1J5W0 (zinc finger CCCH domain-containing protein 18-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483739 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.6e-53
Identity = 127/274 (46.35%), Postives = 171/274 (62.41%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTNEQDMIRLAFSPDCIIQCVINTAKSDLGIPE 63
           E T ++++RIC+L+ E    I+ Y++LNT+++DMIRLAF PD ++Q  I  AKSDLGI E
Sbjct: 5   EPTNLLFQRICELDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDLGITE 64

Query: 64  VP-------------IPYGRVSSSPSSRLFLPHQTFSDFALQNQMQWLSL-DSATPVRRS 123
           +              +P       PSSRLF P +++SD  +QN MQ+LSL D    V   
Sbjct: 65  MVSSALSPVSISDPYLPLSVYRRDPSSRLF-PSESYSDLDIQNPMQFLSLEDQFESVNTV 124

Query: 124 RRREFPVKVCHYFSKGYCKHGNTCRYVHDVVE----KEPRVVVLSGRALDKLEIEIVELL 183
             R FP+K+CHYFSKGYCKHG+ CRY H  V+       + V+L G+AL+ LE+EIV LL
Sbjct: 125 GLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIVGLL 184

Query: 184 KSRGGLPILIAALPMVYRERYGRSLLGDGYLS------KTGLSLTRLLALLSRIRVLDGL 243
           KSR G PI IA+LP+VY E YG++L  DGYL+      +   SLTRLL+ L+ I VLD  
Sbjct: 185 KSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRP 244

Query: 244 HGKNSIILADDSPKRNEISEQSVRQNSSTLGCSS 254
           HG++S+IL +D  K  + SE   RQ   T   +S
Sbjct: 245 HGQHSLILVEDIGKYIDSSENIARQIYITFPAAS 277

BLAST of Carg05151 vs. TAIR 10
Match: AT2G05160.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-42
Identity = 120/320 (37.50%), Postives = 165/320 (51.56%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDCIIQCVINTAKSDLG- 63
           E+  +V+ RI +LEPE   KI GY++L      +DMIRLAF PD ++  VIN  K +L  
Sbjct: 5   ESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKYELAR 64

Query: 64  ---------IPEVPIP-YGRVSSS---------PSSRLFLPHQTFSDFALQNQMQWLSLD 123
                       +P P +G  + S         P    F  + T  D  LQN +Q+L+ +
Sbjct: 65  NSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMD-TLQNNLQFLNFE 124

Query: 124 -----------------SATPVRRSRRR----EFPVKVCHYFSKGYCKHGNTCRYVHDVV 183
                               P+R SRR     EFPVK+CHYF+KG+CKHGN CRY H  +
Sbjct: 125 DPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQI 184

Query: 184 EKEPRVV---------------VLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRER 243
             E                   V+S  +L+KLE EI+ELLK R G PI IA+LPM+Y E+
Sbjct: 185 IPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEK 244

Query: 244 YGRSLLGDGYLS------KTGLSLTRLLA-LLSRIRVLDGLHGKNSIILADDSPKRNEIS 259
           YGR+L  +GYL+      K G SLT+LLA L + IR++D  HG++S+ILA+D+ K  E +
Sbjct: 245 YGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYT 304

BLAST of Carg05151 vs. TAIR 10
Match: AT3G52980.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-41
Identity = 123/312 (39.42%), Postives = 171/312 (54.81%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVML--NTNEQDMIRLAFSPDCIIQCVINTAKSDL-- 63
           E   +V+ RI +LEPE   KI+GY++L  + N++DMIRLAF PD +++ +IN  K +L  
Sbjct: 5   EAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKCELAK 64

Query: 64  -----GIP---EVPI-PYGR----------VSSSPSSRL-----FLPHQTFSDFALQNQM 123
                 IP    + I  +G           VS+SP S L     F  +    D +L++ +
Sbjct: 65  NSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSLKDNV 124

Query: 124 QWL--SLDSAT----------------PVRRSRRR----EFPVKVCHYFSKGYCKHGNTC 183
           Q+     DS T                 +R SRR     EFP+K+CHYF+KG+CKHGN C
Sbjct: 125 QYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKHGNNC 184

Query: 184 RYVHDVVEKEPRVVVLSGRALDKLEIEIVELLKSRGGLPILIAALPMVYRERYGRSLLGD 243
              H+ +  E  VV  S  +L+KLE EI+ELLKSR G PI IA LPM+Y E+YGRSL  +
Sbjct: 185 ---HNNLSDEEHVV--SPGSLEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAE 244

Query: 244 GYLS------KTGLSLTRLLA-LLSRIRVLDGLHGKNSIILADDSPKRNEISEQSVRQNS 259
           GYL+      K G SLT+LLA L + IR++D  HG++S+ILA+D  K  E + +     +
Sbjct: 245 GYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGA 304

BLAST of Carg05151 vs. TAIR 10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-12
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

BLAST of Carg05151 vs. TAIR 10
Match: AT3G51950.2 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-12
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 0

Query: 4   ETTKIVYERICKLEPEYGLKIVGYVMLNTN-EQDMIRLAFSPDCIIQCVINTAKSDLGI- 63
           E T+IV  RI  L+PE   KI+G ++L  + E++MIRLAF P+ ++  VI  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 64  ----------PEVPIPYGRVSSS--PSSRLFLPH------QTFSDFALQNQMQWLSLDSA 123
                      E+  P     SS  P+S  F  +         +DF L + M   S D  
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 124

Query: 124 TPVRR--------------SRRREFPVKVCHYFSKGYCKHGNTCRYVH-----DVVEKEP 155
             V                     F    C YF++G+CK+G +CR+VH     D+V    
Sbjct: 125 GSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSDGGADLVGSPS 184

BLAST of Carg05151 vs. TAIR 10
Match: AT3G21100.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-06
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 4  ETTKIVYERICKLEPEYGLKIVGYVML-NTNEQDMIRLAFSPDCIIQCVINTAKSDLGI 62
          + T I++ +I  LEP++  KI+GY++L +  + D++RLA  P+ ++Q V   AKS LG+
Sbjct: 5  DPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSALGL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026992.12.3e-147100.00Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma s... [more]
XP_022947526.16.6e-14298.10zinc finger CCCH domain-containing protein 18-like [Cucurbita moschata][more]
XP_022971078.13.6e-14099.61zinc finger CCCH domain-containing protein 18-like [Cucurbita maxima][more]
KAG6604911.12.2e-137100.00Zinc finger CCCH domain-containing protein 18, partial [Cucurbita argyrosperma s... [more]
XP_023533200.11.4e-13198.77zinc finger CCCH domain-containing protein 18-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9SJ416.8e-4137.50Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q6ZK574.9e-2344.85Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX... [more]
Q84ZT01.6e-1330.00Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... [more]
Q9SV095.6e-1130.00Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q0D3J96.4e-0732.18Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX... [more]
Match NameE-valueIdentityDescription
A0A6J1G6P33.2e-14298.10zinc finger CCCH domain-containing protein 18-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1I5S71.7e-14099.61zinc finger CCCH domain-containing protein 18-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1CFC61.6e-5647.22zinc finger CCCH domain-containing protein 18 isoform X2 OS=Momordica charantia ... [more]
A0A6J1CFZ31.6e-5647.22zinc finger CCCH domain-containing protein 18 isoform X1 OS=Momordica charantia ... [more]
A0A6J1J5W03.6e-5346.35zinc finger CCCH domain-containing protein 18-like isoform X1 OS=Cucurbita maxim... [more]
Match NameE-valueIdentityDescription
AT2G05160.14.8e-4237.50CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
AT3G52980.14.1e-4139.42Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G51950.14.0e-1230.00Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G51950.24.0e-1230.00Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G21100.23.3e-0638.98RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 113..139
e-value: 0.0041
score: 26.4
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 117..138
e-value: 2.4E-6
score: 27.3
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 113..140
score: 14.70859
NoneNo IPR availableGENE3D4.10.1000.10coord: 105..161
e-value: 1.8E-6
score: 29.9
NoneNo IPR availablePANTHERPTHR24009:SF0ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18coord: 3..246
NoneNo IPR availablePANTHERPTHR24009RNA-BINDING (RRM/RBD/RNP MOTIFS)coord: 3..246
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 154..221
e-value: 3.8E-5
score: 23.5
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 115..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05151-RACarg05151-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding