Carg05139 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05139
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 3116460 .. 3118748 (-)
RNA-Seq Expression	Carg05139
Synteny	Carg05139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTGTGCTTCTGATTGGATCATTTGGATTCGAATCAGCCTGGGTTTGTTCCTAACCGTACCATGGTTAATCATGGAGTCGTTGAAACTGGAGGGCAGCCAAAAGAGAATTCCCCCTAGAGCTAATTGAATAGAGGTTAATGTGAGTGTTAGTTGAGTCATGACATGAACGAAATGATATCTTTTACCAAACAAGTTAGCTCGACGACTACAGTAAAAACCTGTACTCTTAGTGATAAGAACTCGATTGGGTTTCTATCTTATGAGTTTACACTAAGAATCTGGGAACGATTTTTATGAATGTATGAACTTTGGTTTGTGTATCTAGAAATGGGGTTCTTCTAGTTAGAACTAATTCGATGGCTTTTGTGCATTTCAGGAATATGACAGAACAAAAAATGAAACTTTATGTGGTTTTCTTGTTTCATGTTTTTGACTACTCCTCTTTTGCTCTTCATCGGTGTGTGCTCACTCGGATTGCTGCTAAGCCTTCTCCGACACCGGCACCGGCACCGGTTTGTGAGCATGTTAATCTCACTGACTTGTTTATTGTAGCGGGCCCATTTCATCCCATAACGATTCTGAAGAGGGAGTAATTGTAATAACCCCACTGCTAGCAGATATTATTCTCTTTTAGTTTTCTCTTTCGGGCTTTCCTTCAAGGATTTTAAAAAGTGTCTGTTAGGGAGAGATTCTTCAAGGATTTTAAAAAGTTTCTGTTAGGGAGAGATTTTCATACCCTTATAAAGAATATTTAGTTCTCCTCCCCAACTGATGTGGGATCTCACATTCCACCCCCTTTGGGGCCCAACATCCTTGTTGGCTCCCCAACTGATGTGAGATCTCACATTCTACCATGGCCCAACGTCCTTGCTAGCACACCTCCTTGTGTCCTTCCCCTTCGGAATTCAACCTCCTCGCTGACACATCATGCAATGTCTGATTCTAATACCATTTGTAATGGTTCAAGCCCACTGCTTGCAGATATTATCCTCTTTGAGCCTGTAGCAATTAACATTGCTACAGTAACCATTTGTACCAAAGGATAGTGCATTTTCATCACTCGGAAACCTTCTCCATCCAGTTTAACCAAGGAACAGCTTAAGTCACTGCTGCTCTTTCATAGCTTACCACATTACTACACTCTAGCTGATTTCAACGACCTTACCCAAAAGAGCCCCATTACTACATATGATAGTGAGCAGTACAGTTAGATTTTTACCGATGCATCCGGCACCGTGCACATTAGCTCTGGCTGGACCGACACGAAAGTGAGTAGCAGCATGCTTTCAACCTATCCCGTTTGCCGTTAACCAACTCGATCGTGTACTACTTCCAGAGGCAATTTTCTGATATCCCTCCCACCCCATCTCCAGTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGTAAAAATTTATTATAGCACAGGCTGTTGTAATATATTACAAAAAATGAAACGCCTAAGAACAAACTTATGGTTCAATGATCAAGCAACTAAAGTTACAAAAACCCCAACAAAATTCTCCAATTCTAAACTAGAAAGTATAATTCAGATGGGTGTAGGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACGTTGCCTTGATCGATATTAACAGCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

mRNA sequence

ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

Coding sequence (CDS)

ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

Protein sequence

MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMVTADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKEDVVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDHQEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERRRAMIS

Homology

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BLAST of Carg05139 vs. NCBI nr
Match: KAG7026981.1 (hypothetical protein SDJN02_10989, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 474.9 bits (1221), Expect = 4.1e-130
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV 60
           MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV
Sbjct: 1   MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV 60

Query: 61  TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED 120
           TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED
Sbjct: 61  TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED 120

Query: 121 VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH 180
           VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH
Sbjct: 121 VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH 180

Query: 181 QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR 240
           QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR
Sbjct: 181 QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR 240

Query: 241 RAMIS 246
           RAMIS
Sbjct: 241 RAMIS 245

The following BLAST results are available for this feature:

BLAST of Carg05139 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026981.1	4.1e-130	100.00	hypothetical protein SDJN02_10989, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg05139 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05139 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05139 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05139-RA	Carg05139-RA	mRNA