Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTGTAGAAGCTCACACAAGCGAAGATGAGCAACAAGGTATTTGTTTGTACCATGATTTTAATCCATGTTTGCATGAAGATACGTAAGTAATCATTAATTTGATAATCCTCTAGTTTCAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGCGGTCAAGGTGGAAGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGGAGGTGGTTATGGTGGCGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGAAAGGAGGCGGTGGCAGTGGCAGTGGCGGAGGTGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGTACGGAGGAGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA
mRNA sequence
ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTGTAGAAGCTCACACAAGCGAAGATGAGCAACAAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGCGGTCAAGGTGGAAGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGGAGGTGGTTATGGTGGCGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGAAAGGAGGCGGTGGCAGTGGCAGTGGCGGAGGTGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGTACGGAGGAGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA
Coding sequence (CDS)
ATGAAGTCCAAAGGTTTTCTGCTTGTGTGTCTTCTGGTTGTGTCTGCTTTGGTGGTGTCGTGGGCTGTAGAAGCTCACACAAGCGAAGATGAGCAACAAGAGAATGTAGCCCAGGAGGTTGAAGAGGCTAAACATGGGCATGGTGGCGGCGGTTATGGAGGCGGTGGGTCTGGCGGCGGCGGCGGTCAAGGTGGAAGTGGGTCTGGTGGCGGCGGTCATGGCGGAGGTGGGTCTGGTGGCGGTGGTCAAGGCGGAGGTGGTTATGGTGGCGGTGGGTCTGGTGGTAGTGGATCTGGCGGTGGCGGCAAAGGAGGAGGTGGATCTGGTGGTAGTGGATCTGGCGGTGGCGGTAAAGGGGGAGGTGGATATGGCGGTGGAGGGAAAGGAGGCGGTGGCAGTGGCAGTGGCGGAGGTGGGAAAGGAGGCGGTGGATACGGCGGAGGTGGAAAAGGAGGCGGTGGGAGTGGCAGTGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGAAAGGAGGCGGGGGATACGGCGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGTACGGAGGAGGAGGAGGAGGTTATGAAGAGAGTGAGTATACAAGAGGAGGACGAGGAGGGTGGAAGGGAGGAGGTGGAGGAAAAGGCGGCGGCGGTGGAAAAGGTGGCGGCGGCGGAAAGTGA
Protein sequence
MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK
Homology
BLAST of Carg05136 vs. NCBI nr
Match:
KAG7026978.1 (hypothetical protein SDJN02_10986, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 216.5 bits (550), Expect = 2.4e-52
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG
Sbjct: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
Query: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG
Sbjct: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
Query: 121 GGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGGGG 180
GGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGGGG
Sbjct: 121 GGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGGGG 180
Query: 181 GGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK
Sbjct: 181 GGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 224
BLAST of Carg05136 vs. NCBI nr
Match:
KAG6604895.1 (hypothetical protein SDJN03_02212, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 204.5 bits (519), Expect = 9.4e-49
Identity = 224/244 (91.80%), Postives = 224/244 (91.80%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG
Sbjct: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
Query: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG
Sbjct: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
Query: 121 GGY--------------------GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGG 180
GGY GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGG
Sbjct: 121 GGYGGGGSGGGGSGGGGKGGGGSGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGG 180
Query: 181 GKGGGGGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGG 225
GKGGGGGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGG
Sbjct: 181 GKGGGGGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGG 240
BLAST of Carg05136 vs. NCBI nr
Match:
XP_023534314.1 (acanthoscurrin-2-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 190.3 bits (482), Expect = 1.8e-44
Identity = 219/239 (91.63%), Postives = 221/239 (92.47%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGS GG
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGS-GG 60
Query: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG
Sbjct: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
Query: 121 GGY---------------GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGG 180
GGY GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK GG
Sbjct: 121 GGYGGGGSGGGGKGGGGSGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK-GG 180
Query: 181 GGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGKGGGGY GGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK
Sbjct: 181 GGKGGGGY-GGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 236
BLAST of Carg05136 vs. NCBI nr
Match:
XP_023534315.1 (acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 188.0 bits (476), Expect = 9.1e-44
Identity = 216/226 (95.58%), Postives = 218/226 (96.46%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQ--ENVAQEVEEAKHGHGGGGYGGGGSG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQ ENVAQEVEEAKHGHGGGGYGGGGS
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEVEEAKHGHGGGGYGGGGS- 60
Query: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK 120
GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGG GG GSGGGGK
Sbjct: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGYGGGGSGGGGK 120
Query: 121 GGGGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGG 180
GGGG GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK GGGGKGGGGY GGGG
Sbjct: 121 GGGGSGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK-GGGGKGGGGY-GGGG 180
Query: 181 GGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK
Sbjct: 181 GGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 223
BLAST of Carg05136 vs. NCBI nr
Match:
XP_023534313.1 (acanthoscurrin-2-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 185.3 bits (469), Expect = 5.9e-43
Identity = 219/241 (90.87%), Postives = 221/241 (91.70%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQ--ENVAQEVEEAKHGHGGGGYGGGGSG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQ ENVAQEVEEAKHGHGGGGYGGGGS
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEVEEAKHGHGGGGYGGGGS- 60
Query: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK 120
GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK
Sbjct: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK 120
Query: 121 GGGGY---------------GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKG 180
GGGGY GGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK
Sbjct: 121 GGGGYGGGGSGGGGKGGGGSGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGK- 180
Query: 181 GGGGKGGGGYGGGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGG 225
GGGGKGGGGY GGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGG
Sbjct: 181 GGGGKGGGGY-GGGGGGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGG 238
BLAST of Carg05136 vs. ExPASy TrEMBL
Match:
A0A6J1I123 (acanthoscurrin-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 7.3e-31
Identity = 195/224 (87.05%), Postives = 197/224 (87.95%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGSGGG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGS GG
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQENVAQEVEEAKHGHGGGGYGGGGS-GG 60
Query: 61 GGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGKGG 120
GGQGGSGSGGG HGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGG GG GSGGGGKGG
Sbjct: 61 GGQGGSGSGGGSHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGYGGGGSGGGGKGG 120
Query: 121 GGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGGGG 180
GGYGGGG GGGG G GGGG GGGGKGGGGSGS GGGGKGGGGYGGGGGGG
Sbjct: 121 GGYGGGGSGGGGKGGGGGGS-----GGGGKGGGGSGS------GGGGKGGGGYGGGGGGG 180
Query: 181 GGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGG GGGG GYEESEY RGG GG KGGGGG GGGGG GGGGGK
Sbjct: 181 GGGYGGGGGRGYEESEYKRGG-GGGKGGGGG-GGGGGGGGGGGK 210
BLAST of Carg05136 vs. ExPASy TrEMBL
Match:
A0A6J1I5V7 (acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 192/226 (84.96%), Postives = 194/226 (85.84%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQ--ENVAQEVEEAKHGHGGGGYGGGGSG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQ ENVAQEVEEAKHGHGGGGYGGGGS
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEVEEAKHGHGGGGYGGGGS- 60
Query: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK 120
GGGGQGGSGSGGG HGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGG GG GSGGGGK
Sbjct: 61 GGGGQGGSGSGGGSHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGYGGGGSGGGGK 120
Query: 121 GGGGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGG 180
GGG GSGGGGKGGGGYGGGGKGGGGSGS GGGGKGGGGYGGGGG
Sbjct: 121 GGG------------GSGGGGKGGGGYGGGGKGGGGSGS------GGGGKGGGGYGGGGG 180
Query: 181 GGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGGGG GGGG GYEESEY RGG GG KGGGGG GGGGG GGGGGK
Sbjct: 181 GGGGGYGGGGGRGYEESEYKRGG-GGGKGGGGG-GGGGGGGGGGGK 205
BLAST of Carg05136 vs. ExPASy TrEMBL
Match:
A0A6J1I2D6 (acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 195/226 (86.28%), Postives = 197/226 (87.17%), Query Frame = 0
Query: 1 MKSKGFLLVCLLVVSALVVSWAVEAHTSEDEQQ--ENVAQEVEEAKHGHGGGGYGGGGSG 60
MKSKGFLLVCLL+VSALVVSWA+EAHTSEDEQQ ENVAQEVEEAKHGHGGGGYGGGGS
Sbjct: 1 MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEVEEAKHGHGGGGYGGGGS- 60
Query: 61 GGGGQGGSGSGGGGHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGSGGSGSGGGGK 120
GGGGQGGSGSGGG HGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGG GG GSGGGGK
Sbjct: 61 GGGGQGGSGSGGGSHGGGGSGGGGQGGGGYGGGGSGGSGSGGGGKGGGGYGGGGSGGGGK 120
Query: 121 GGGGYGGGGKGGGGSGSGGGGKGGGGYGGGGKGGGGSGSGGGGKGGGGGKGGGGYGGGGG 180
GGGGYGGGG GGGG G GGGG GGGGKGGGGSGS GGGGKGGGGYGGGGG
Sbjct: 121 GGGGYGGGGSGGGGKGGGGGGS-----GGGGKGGGGSGS------GGGGKGGGGYGGGGG 180
Query: 181 GGGGGGYGGGGGGYEESEYTRGGRGGWKGGGGGKGGGGGKGGGGGK 225
GGGGG GGGG GYEESEY RGG GG KGGGGG GGGGG GGGGGK
Sbjct: 181 GGGGGYGGGGGRGYEESEYKRGG-GGGKGGGGG-GGGGGGGGGGGK 212
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7026978.1 | 2.4e-52 | 100.00 | hypothetical protein SDJN02_10986, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6604895.1 | 9.4e-49 | 91.80 | hypothetical protein SDJN03_02212, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023534314.1 | 1.8e-44 | 91.63 | acanthoscurrin-2-like isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
XP_023534315.1 | 9.1e-44 | 95.58 | acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo] | [more] |
XP_023534313.1 | 5.9e-43 | 90.87 | acanthoscurrin-2-like isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1I123 | 7.3e-31 | 87.05 | acanthoscurrin-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=... | [more] |
A0A6J1I5V7 | 2.3e-29 | 84.96 | acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=... | [more] |
A0A6J1I2D6 | 2.3e-29 | 86.28 | acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=... | [more] |
Match Name | E-value | Identity | Description | |