Carg05135 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05135
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	translation machinery-associated protein 7-like
Location	Carg_Chr07: 3101403 .. 3102115 (+)
RNA-Seq Expression	Carg05135
Synteny	Carg05135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCAAGCAAGGTACGATCTGTTTCCTCGAGGCTATGGAAAATTTGAGCTTTCTATTTCAGTTTCATAGGCAGTATCATCGATCGGATTAGAAGACAATTGCGAAGCGATTGGCTATATTGTGATATATAATCCCCTTTTTTCCCGATTTAAATTGTTATATAGAGAATCGATTTTGTTGTTTTTCTTTACAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGCTGATAAGAAAGAATACGACGAGGTATGCTTTGAATTCATTATCTTTAGGTCCTATGTCGTATGTCTATTTTCTTCCTTGTTCGGATTTGAATGCAACCTTTGGTATCGATGTAATTTATTTTCTCTGTTCGAATTTAGATTGTTTGTTGTCGATTAGAATGACTCTCCACCCTGTATCGTGCCCGTGCCCGTGTTACTTTTCGTAACTAGTGTTTGAATTTTACTGGGTTTTGTCAACAGGTTGATATGGCCAATTTGCAAAAGAAGAAGGACGAGGAGAAGGTGAGATCTTGAACTTCAAAGTTTAAACTGTGACAAAACGTTTCCTCTGATCGATTGGTCGGTTGTGTCGAGGATTACTATGAACTATAATTTTGAGTTGCTTGATGATGTTATGCAGGCGCTCAGGGAACTTAGAGCAAAGGCCCAACAGAAGGGGACATTTGGAGGTGCTGGACTCAAGAAGAGTGGGAAGAAATGA

mRNA sequence

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGCTGATAAGAAAGAATACGACGAGGTTGATATGGCCAATTTGCAAAAGAAGAAGGACGAGGAGAAGGCGCTCAGGGAACTTAGAGCAAAGGCCCAACAGAAGGGGACATTTGGAGGTGCTGGACTCAAGAAGAGTGGGAAGAAATGA

Coding sequence (CDS)

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGCTGATAAGAAAGAATACGACGAGGTTGATATGGCCAATTTGCAAAAGAAGAAGGACGAGGAGAAGGCGCTCAGGGAACTTAGAGCAAAGGCCCAACAGAAGGGGACATTTGGAGGTGCTGGACTCAAGAAGAGTGGGAAGAAATGA

Protein sequence

MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKKSGKK

Homology

[Close]

BLAST of Carg05135 vs. NCBI nr
Match: XP_022947069.1 (translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947070.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947071.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947072.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022947073.1 translation machinery-associated protein 7-like [Cucurbita moschata] >XP_022971147.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971149.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971150.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971151.1 translation machinery-associated protein 7-like [Cucurbita maxima] >XP_022971152.1 translation machinery-associated protein 7-like [Cucurbita maxima] >KAG7026977.1 Translation machinery-associated protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. NCBI nr
Match: XP_023534319.1 (translation machinery-associated protein 7-like [Cucurbita pepo subsp. pepo] >XP_023534320.1 translation machinery-associated protein 7-like [Cucurbita pepo subsp. pepo] >XP_023534321.1 translation machinery-associated protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDEVDMAN+QKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANMQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. NCBI nr
Match: XP_022145738.1 (translation machinery-associated protein 7 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPK DKKEYDEVDMAN+QKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 35 MSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKALRELRAKAQQKGTFGGAGLKK 94

Query: 61 SGKK 65
          SGKK
Sbjct: 95 SGKK 98

[Close]

BLAST of Carg05135 vs. NCBI nr
Match: KGN56723.1 (hypothetical protein Csa_009747 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
           MSSKQGGKAKPLKQPK DKK+YDEVDMAN+QKKKDEEKAL+ELRAKAQQKGTFGGAGLKK
Sbjct: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105

Query: 61  SGKK 65
           SGKK
Sbjct: 106 SGKK 109

[Close]

BLAST of Carg05135 vs. NCBI nr
Match: XP_038888592.1 (translation machinery-associated protein 7-like [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPK DKK+YDEVD+AN+QKKKDEEKAL+ELRAKAQQKGTFGGAGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKDYDEVDLANIQKKKDEEKALKELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy Swiss-Prot
Match: A1A4Q4 (Translation machinery-associated protein 7 OS=Bos taurus OX=9913 GN=TMA7 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MS ++GGK KPLKQPK   KE DE D A  QK+K+E+K L EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy Swiss-Prot
Match: Q9Y2S6 (Translation machinery-associated protein 7 OS=Homo sapiens OX=9606 GN=TMA7 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MS ++GGK KPLKQPK   KE DE D A  QK+K+E+K L EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy Swiss-Prot
Match: Q8K003 (Translation machinery-associated protein 7 OS=Mus musculus OX=10090 GN=Tma7 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MS ++GGK KPLKQPK   KE DE D A  QK+K+E+K L EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy Swiss-Prot
Match: Q05AK9 (Translation machinery-associated protein 7 OS=Danio rerio OX=7955 GN=tma7 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.4e-10
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MS ++GGK KPLK PK   KE DE +MA  QK+K+++KA+ +L+AKA  KG   G G+KK
Sbjct: 1  MSGREGGKKKPLKAPKKQSKEMDEDEMAFKQKQKEDQKAMEQLKAKAAGKGPLTGGGIKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy Swiss-Prot
Match: Q9XZS3 (Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster OX=7227 GN=CG13364 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-10
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MS ++GGK KPLK PK D K+ DE DMA  QK+K+++KAL   +A A +KG   G G+KK
Sbjct: 1  MSGREGGKKKPLKAPKKDSKDLDEDDMAFKQKQKEQQKALEAAKANASKKGPLVGGGIKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy TrEMBL
Match: A0A6J1I7R5 (translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111469908 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy TrEMBL
Match: A0A6J1G5L5 (translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111451053 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. ExPASy TrEMBL
Match: A0A6J1CWS4 (translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC111015118 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPK DKKEYDEVDMAN+QKKKDEEKALRELRAKAQQKGTFGGAGLKK
Sbjct: 35 MSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKALRELRAKAQQKGTFGGAGLKK 94

Query: 61 SGKK 65
          SGKK
Sbjct: 95 SGKK 98

[Close]

BLAST of Carg05135 vs. ExPASy TrEMBL
Match: A0A0A0L4M8 (F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.8e-22
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
           MSSKQGGKAKPLKQPK DKK+YDEVDMAN+QKKKDEEKAL+ELRAKAQQKGTFGGAGLKK
Sbjct: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105

Query: 61  SGKK 65
           SGKK
Sbjct: 106 SGKK 109

[Close]

BLAST of Carg05135 vs. ExPASy TrEMBL
Match: A0A5A7TZV6 (F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002810 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
           MSSKQGGKAKPLKQPK DKK+YDEVDMAN+QKKK+EEKAL+ELRAKAQQKGTFGGAGLKK
Sbjct: 42  MSSKQGGKAKPLKQPKVDKKDYDEVDMANIQKKKEEEKALKELRAKAQQKGTFGGAGLKK 101

Query: 61  SGKK 65
           SGKK
Sbjct: 102 SGKK 105

[Close]

BLAST of Carg05135 vs. TAIR 10
Match: AT1G15270.1 (Translation machinery associated TMA7 )

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-24
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDE D+AN+QKKKDEEKAL+ELRAKA QKG+FGG+GLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

[Close]

BLAST of Carg05135 vs. TAIR 10
Match: AT3G16040.1 (Translation machinery associated TMA7 )

HSP 1 Score: 96.3 bits (238), Expect = 9.6e-21
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MSSKQGGKAKPLKQPKADKKEYDEVDMANLQKKKDEEKALRELRAKAQQKGTFGGAGLKK 60
          MSSKQGGK KPLKQPK+ KKEYDE DM  +QKKKDEEKAL+ELRAKA QKG+FGG+GLKK
Sbjct: 1  MSSKQGGKLKPLKQPKSGKKEYDEHDMELMQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 61 SGKK 65
          SGKK
Sbjct: 61 SGKK 64

The following BLAST results are available for this feature:

BLAST of Carg05135 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947069.1	7.4e-23	100.00	translation machinery-associated protein 7-like [Cucurbita moschata] >XP_0229470...	[more]
XP_023534319.1	1.3e-22	98.44	translation machinery-associated protein 7-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022145738.1	3.7e-22	96.88	translation machinery-associated protein 7 [Momordica charantia]	[more]
KGN56723.1	1.8e-21	93.75	hypothetical protein Csa_009747 [Cucumis sativus]	[more]
XP_038888592.1	4.0e-21	92.19	translation machinery-associated protein 7-like [Benincasa hispida]	[more]

BLAST of Carg05135 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1A4Q4	5.7e-10	59.38	Translation machinery-associated protein 7 OS=Bos taurus OX=9913 GN=TMA7 PE=3 SV...	[more]
Q9Y2S6	5.7e-10	59.38	Translation machinery-associated protein 7 OS=Homo sapiens OX=9606 GN=TMA7 PE=1 ...	[more]
Q8K003	5.7e-10	59.38	Translation machinery-associated protein 7 OS=Mus musculus OX=10090 GN=Tma7 PE=3...	[more]
Q05AK9	7.4e-10	56.25	Translation machinery-associated protein 7 OS=Danio rerio OX=7955 GN=tma7 PE=3 S...	[more]
Q9XZS3	9.7e-10	56.25	Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster OX...	[more]

BLAST of Carg05135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7R5	3.6e-23	100.00	translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G5L5	3.6e-23	100.00	translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CWS4	1.8e-22	96.88	translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0L4M8	8.8e-22	93.75	F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1	[more]
A0A5A7TZV6	2.6e-21	92.19	F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G0028...	[more]

BLAST of Carg05135 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15270.1	4.2e-24	89.06	Translation machinery associated TMA7	[more]
AT3G16040.1	9.6e-21	82.81	Translation machinery associated TMA7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..45
None	No IPR available	PANTHER	PTHR28632:SF9	F9L1.21 PROTEIN	coord: 1..64
IPR015157	Translation machinery associated TMA7	PFAM	PF09072	TMA7	coord: 3..64 e-value: 2.8E-23 score: 82.6
IPR015157	Translation machinery associated TMA7	PANTHER	PTHR28632	TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05135-RA	Carg05135-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation