Carg05132 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05132
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear cap-binding protein subunit 2
Location	Carg_Chr07: 3087608 .. 3091510 (-)
RNA-Seq Expression	Carg05132
Synteny	Carg05132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGTAAATTGCTTCGTTGTTTATTTAATTTTATAGTCGATTCGTTTTCTGCTCCATTGGGTTTCTGGGGTGTATCAACGACGTCTTTACTAGTTCTATTAGGGCATGTTTGAGAGTTTATATGAATTGGATTAGGGAAAAGTTTTGTTTCGATTGATTTTGTTCGTTGCGAGACTTATGTTGGTACCAACTGTTGCCCTTTTAGTTTGGGGGACGGTGGAGTTGGCTGCAGGTGTTTCAAATTGGCTTTTACGTTTACTCCCCTGGTCCTTTATAAACCCCCAATCAAAAAAATGGATAAATGGTTTTGTTCTTGATATTCGTTCTATAGCTTCTGATGGATGTTATGGTTGTGTGGCCATTGTGGCTTAAATATTGAAGAGCATTAAAGGTTTCATTTACTTTGATTGGGAAATCTATTGGAATGAACAATGTTTCGTATATGTAATTAGATGATAGATAATGTTTCTATGATTCTATATGTGACAATCTTCGTGCTTCCAACTTTATCATCTGTAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTCCATAGCTCTTCCTAACTAGTAGAATATCTTGATGTACTTTTTATCAATAGTCTGCCATTGTTGATAGGCCTCCCATTGATACCGCTTGATATGCCTTCCCACGATTTCACCACCCTTCTTAGTGCAAACCATTTTGAATATTTGAAGGTGGTTGGGTGGAAATTGAATGATCAATATTAGATCCATTTCATTCCAAAATTTTAAAGGAATGGGTGCATTTTAAACTTGAGACTGTTAGCTCATTTCATGCCTTTCATACTCATTCCTGCAAGAAATTATATGCATATATCTGCCACTAAGCCTTTCAAATTATGGGAAAATCTCTTAATTGTTGTTTATCTTGTCTTTTCCTTTATTAGATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGTACCATTTATTAATTCAATCTTCGTTTGTTGTCTTCTTTCTTTCTTTCTATATATATATATGACTGCTAATATATTGTTGATTTCTATACCTCCTTTTTTTTTTTTTTTCCCTTTTTTTGCATAATCTAAACACAACTACACAAATCCAGGCTTCATAAAATTAAGTTTATTACATCCTAAGAAGTTCAAACACACGTCATGTCAATTTCTAAAATAGTAGAACTTATTGGGACACATTTTTATAGAGTGTATGTGTATGTATTGGTACTGGTATTGGTGATACTTCATAATAGATAAAACATGTAAATTTACATACACAAAATATACTTCACAAAAAAAAAAAAAAAAAAAACAAAGTCAAGTCAACTAGCAATACAGAATTATTTGGCTGGCTATGGCTTGAGGAAGAAGTTGTGATCCTTATACTTTAGGAATGATCTATGTCTAAGGGTTAGAATATGTTATAGGTCCCTCTTTTGTTTTCCCCACTTTTTAGGTTGGGCTTGTATGGACTAGACTTTAATTTTTTTTTTTTTTCCTTGAGCCATAGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTGTAGGAAAACATCTCCAGAGGGGTCCATAACTGCATTTGTGAGAATGGTCAACTTGCATCACTTATACTAAAATGCGGGGGTGGGCGTTTGAAGTGCTTAGAAGGGGTTTGAAGTGTTAAAAAAATTGTTTTAAGTACTTGAAAAGTCATTCCAAATAGGCCCTTCACCCCCAAAATGAACTTGATTAGTATGTTGAGCTGTGTTACTTTAACGACCTTCACTCTACTGAGTTCCTTGTTGTGGCCTGTCGTTCCTCAAATGGCATGTGATACACACGTTATAAACTTTTGCTGATTTAATATCATAGCTCCATTCATATGTAAAGGCTTTCTAAAAATGCTAACCTTTTGGCTCCTCACGTCCTTTATATTTCTCATCTCCGTTTAGTTTCCTTAATTTATTGAACGTAGAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCGTAAGTTGCTATGAGGAATTCTATGCATAAACATTATTGATTTGATAGGCCTTTATCTTCATGTTTTTCTTTTTCCCTGCAGATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGGTATCAAATTTCTAAAGCTGTTTAATCCTATCTTGAATGAGAATTTATTTGCATTGTTTTTTTATATTTGTCCAATTACATTATTGTTGTTTCAAAAACTAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGTAATTTTTAAATAATGCCTTGTCGTAATTCATCTTTGTGTGCTTAAATTTTGACGTAAAAGGCACCAGACGCTACTGCCGTTCTTTCTGCATAACAAATTAATCCATAGCCATACTATGCGATGCTGTTCTGTCACCAGACCATAAAACAATTCTTATCTACACTTCTTTTCTGTGATTTTGGCTGTATAAGTTCCCATGCTTCAGTATTTGATAGTATATGCTGTAACAGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

mRNA sequence

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

Coding sequence (CDS)

ATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAA

Protein sequence

MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVIDYKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQLVDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH

Homology

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BLAST of Carg05132 vs. NCBI nr
Match: KAG7026974.1 (Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 667.2 bits (1720), Expect = 7.6e-188
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID
Sbjct: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
           YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL
Sbjct: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 334

[Close]

BLAST of Carg05132 vs. NCBI nr
Match: XP_022947066.1 (nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 nuclear cap-binding protein subunit 2-like [Cucurbita pepo subsp. pepo] >KAG6604891.1 Nuclear cap-binding protein subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 460.7 bits (1184), Expect = 1.1e-125
Identity = 249/334 (74.55%), Postives = 249/334 (74.55%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. NCBI nr
Match: XP_022971080.1 (nuclear cap-binding protein subunit 2-like [Cucurbita maxima])

HSP 1 Score: 458.8 bits (1179), Expect = 4.1e-125
Identity = 248/334 (74.25%), Postives = 248/334 (74.25%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKR SDFES
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRNSDFES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. NCBI nr
Match: XP_008464581.1 (PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo])

HSP 1 Score: 427.9 bits (1099), Expect = 7.8e-116
Identity = 233/334 (69.76%), Postives = 243/334 (72.75%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLSVYRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGT SLGSM PVM+Q+G HGGSHGHG+RHGRDYHHRKR+RDDDRHAHESSKRTSD+ES
Sbjct: 241 VDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDDDRHAHESSKRTSDYES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSN+ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. NCBI nr
Match: XP_004137136.1 (nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear cap-binding protein subunit 2 [Cucumis sativus] >KAE8649330.1 hypothetical protein Csa_015022 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 5.1e-115
Identity = 232/334 (69.46%), Postives = 241/334 (72.16%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGT SLGSM PVM Q+G HGGSHGHG RHGRDYHHRKR+RDDDRHAHESSKRTSD+ES
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDDDRHAHESSKRTSDYES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSN+ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. ExPASy Swiss-Prot
Match: Q9XFD1 (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 9.0e-91
Identity = 193/339 (56.93%), Postives = 224/339 (66.08%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVM-SQHGN---HGGSHGHG--YRHGRDYHHRKRHRDDDRHAHESSKR 300
           VDYGT SLG+ P    + +GN    GG++G G   RHGR  +HRKR RDDDR+  ++S+R
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRR 256

Query: 301 TSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQR 334
            +D ESRR+++ + RPEKNPRFRESGDSD++ +DDRK+R
Sbjct: 301 NTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Carg05132 vs. ExPASy Swiss-Prot
Match: Q84L14 (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.6e-79
Identity = 180/333 (54.05%), Postives = 204/333 (61.26%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS YRDRRF GTQ+E+E AL +S TVYVGNMSFYTTEEQ YELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           +KIIMGLDKNSKTPCGFCF+LYYSRED EDAVK+ISGT+LDDRPIRVDFDWGF++GRQWG
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGK+VQKELEAQR+L
Sbjct: 181 ------------------------------------------RGGYGKMVQKELEAQREL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYG     + PP     G+    +G  YR+ RDY  RKR+R+D+R    SS+R  D E 
Sbjct: 241 VDYGGAFQPNAPP-QYDRGDRKRGYGDSYRNDRDY-QRKRYRNDER----SSQRAPDSEF 241

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQR 334
           +R++      EKNPRFRE GDSDEEDDD  K+R
Sbjct: 301 KRDAIDS---EKNPRFREKGDSDEEDDDYDKRR 241

[Close]

BLAST of Carg05132 vs. ExPASy Swiss-Prot
Match: Q54KR9 (Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=ncbp2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-44
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           M+ L+  P     Y D++   TQDEF+HA+  S+T+YVG +SFYTTEEQ+YELFS+ GEI
Sbjct: 1   MSELYSTPQPF--YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           K+IIMGLD+N KTPCGFCFV YYS+ED  D +K+I+G+ LD+R IR D+D+GF++GRQ+G
Sbjct: 61  KRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIKYINGSKLDERLIRCDWDYGFKEGRQYG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDP 167
           RG SGG                            QVRDEYRTDYDP
Sbjct: 121 RGLSGG----------------------------QVRDEYRTDYDP 136

[Close]

BLAST of Carg05132 vs. ExPASy Swiss-Prot
Match: B7P877 (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-44
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 11  LSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN 70
           LS YRD+ F+G++ E E  L  STT+YVGNMSFYTTEEQ+YELFS+ G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 71  SKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLF 130
            KTPCGFCFV YY+RED E+A+++++GT LDDR IR D+D GF +GRQ+GRG+SGG    
Sbjct: 65  HKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGFVEGRQFGRGKSGG---- 124

Query: 131 LTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                   QVRDEYRTDYD
Sbjct: 125 ------------------------QVRDEYRTDYD 131

[Close]

BLAST of Carg05132 vs. ExPASy Swiss-Prot
Match: Q3ZBJ1 (Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.1e-43
Identity = 88/156 (56.41%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L  S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVL 129
             KT CGFCFV YYSR D E+A+++I+GT LDDR IR D+D GF++GRQ+GRGRSGG   
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGG--- 135

Query: 130 FLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                    QVRDEYR DYD
Sbjct: 136 -------------------------QVRDEYRQDYD 143

[Close]

BLAST of Carg05132 vs. ExPASy TrEMBL
Match: A0A6J1G5C4 (Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111451051 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 5.3e-126
Identity = 249/334 (74.55%), Postives = 249/334 (74.55%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. ExPASy TrEMBL
Match: A0A6J1I4R2 (Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469857 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 2.0e-125
Identity = 248/334 (74.25%), Postives = 248/334 (74.25%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKR SDFES
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRNSDFES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. ExPASy TrEMBL
Match: A0A0A0KVX7 (Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.3e-119
Identity = 238/334 (71.26%), Postives = 247/334 (73.95%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILFSF        
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILFSFQE------ 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -------------------------------------------GGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGT SLGSM PVM Q+G HGGSHGHG RHGRDYHHRKR+RDDDRHAHESSKRTSD+ES
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDDDRHAHESSKRTSDYES 257

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSN+ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 257

[Close]

BLAST of Carg05132 vs. ExPASy TrEMBL
Match: A0A1S3CLT9 (Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 3.8e-116
Identity = 233/334 (69.76%), Postives = 243/334 (72.75%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLSVYRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGT SLGSM PVM+Q+G HGGSHGHG+RHGRDYHHRKR+RDDDRHAHESSKRTSD+ES
Sbjct: 241 VDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDDDRHAHESSKRTSDYES 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRNSN+ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. ExPASy TrEMBL
Match: A0A6J1J7C7 (Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111484127 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.9e-113
Identity = 228/334 (68.26%), Postives = 240/334 (71.86%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF LYYSREDTEDAVK+ISGTILDDRPIR DFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFES 300
           VDYGT SLGSMP V+ Q+G HGGSHG+G+RHGRDYH+RKR+RDDDRHAHESSKRTSD++S
Sbjct: 241 VDYGTGSLGSMPSVIPQYGKHGGSHGNGHRHGRDYHNRKRYRDDDRHAHESSKRTSDYDS 251

Query: 301 RRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH 335
           RRN +HESRP+KNPRFRESGDSDEEDDDDRKQRH
Sbjct: 301 RRNPDHESRPQKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Carg05132 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 )

HSP 1 Score: 335.1 bits (858), Expect = 6.4e-92
Identity = 193/339 (56.93%), Postives = 224/339 (66.08%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVM-SQHGN---HGGSHGHG--YRHGRDYHHRKRHRDDDRHAHESSKR 300
           VDYGT SLG+ P    + +GN    GG++G G   RHGR  +HRKR RDDDR+  ++S+R
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRR 256

Query: 301 TSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQR 334
            +D ESRR+++ + RPEKNPRFRESGDSD++ +DDRK+R
Sbjct: 301 NTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Carg05132 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 )

HSP 1 Score: 335.1 bits (858), Expect = 6.4e-92
Identity = 193/339 (56.93%), Postives = 224/339 (66.08%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVM-SQHGN---HGGSHGHG--YRHGRDYHHRKRHRDDDRHAHESSKR 300
           VDYGT SLG+ P    + +GN    GG++G G   RHGR  +HRKR RDDDR+  ++S+R
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRR 256

Query: 301 TSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQR 334
            +D ESRR+++ + RPEKNPRFRESGDSD++ +DDRK+R
Sbjct: 301 NTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Carg05132 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 32  SSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDA 91
           S +T+YV N+ F  T   ++ LFS  G++ ++ +  D++++   G  FVLY SRED   A
Sbjct: 55  SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114

Query: 92  VKFISGTILDDRPIRV 108
            + +   IL+ R + V
Sbjct: 115 ARSMDAKILNGRKLTV 130

[Close]

BLAST of Carg05132 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-08
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 33  STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAV 92
           S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F+ + S +D   A+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 93  KFISGTILDDRPIRVD 109
           K + G I+D R I V+
Sbjct: 66  KSLDGKIVDGRLIFVE 81

[Close]

BLAST of Carg05132 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-08
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 15  RDRRFQGTQDEFEHALLS--------STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 74
           R   +Q   D +E  L +         TTVY+ N+    T E + EL++  GE+K+  + 
Sbjct: 80  RSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIH 139

Query: 75  LDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVD 109
            DKN + P G   V+Y  R D   A++  +  +LD RP++++
Sbjct: 140 YDKNGR-PSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

The following BLAST results are available for this feature:

BLAST of Carg05132 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026974.1	7.6e-188	100.00	Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022947066.1	1.1e-125	74.55	nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 ...	[more]
XP_022971080.1	4.1e-125	74.25	nuclear cap-binding protein subunit 2-like [Cucurbita maxima]	[more]
XP_008464581.1	7.8e-116	69.76	PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo]	[more]
XP_004137136.1	5.1e-115	69.46	nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear ...	[more]

BLAST of Carg05132 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFD1	9.0e-91	56.93	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
Q84L14	3.6e-79	54.05	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q54KR9	1.3e-44	53.61	Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=nc...	[more]
B7P877	4.8e-44	56.13	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3...	[more]
Q3ZBJ1	9.1e-43	56.41	Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1	[more]

BLAST of Carg05132 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5C4	5.3e-126	74.55	Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A6J1I4R2	2.0e-125	74.25	Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC11146985...	[more]
A0A0A0KVX7	1.3e-119	71.26	Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020...	[more]
A0A1S3CLT9	3.8e-116	69.76	Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE...	[more]
A0A6J1J7C7	3.9e-113	68.26	Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC11148412...	[more]

BLAST of Carg05132 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44200.1	6.4e-92	56.93	CAP-binding protein 20	[more]
AT5G44200.2	6.4e-92	56.93	CAP-binding protein 20	[more]
AT3G10400.1	1.2e-08	34.21	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G46020.1	2.6e-08	35.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	3.4e-08	30.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 7.3E-22 score: 88.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 8.1E-13 score: 48.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 15.579141
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..167 e-value: 2.0E-32 score: 114.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..334
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 1..168
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 1..168
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..113 e-value: 3.1622E-50 score: 160.019
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 29..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05132-RA	Carg05132-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0000339	RNA cap binding
molecular_function	GO:0003676	nucleic acid binding