Carg04934 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04934
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CMP-sialic acid transporter 1
Location	Carg_Chr08: 535676 .. 536680 (-)
RNA-Seq Expression	Carg04934
Synteny	Carg04934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCATTTTATATTTAATATATTTTCTGAAATTAATACTCGAACGGCTTAAAATAATAATTTTCTCTTTAATAAAACACCTTTTTTTTTTAATCTCAATTTCTATGATGAGGAGATCCCGATCTCAATTTCATCTACCCGCGTACTCCGCCTCTCCTCCTCCGGATGCGTTTTTCGTTCGTCACCTCATCTCGATTTCTCGCCATTACGCTCTGGAATTCTTCGCTGTCGCCAAGCCCTAGATTTCTCTCATCTCTGATCTCTGTTGCTGCGCAGATTGCTCGAAATGCAGTGGTACATGGTCGCTTTGCTTCTTACCGTACTCACCAGTTCTCAGGTTTGTGATTCCAAATCAGTACTCTCTCGTTTCACTCAACAGAATTTGAAACTCGGCCTCTTACTTTCATTCACCATTTCGAACAACATGGATGCAGAATGTTCTGTTATTTGTGTAGAAATTTTGATTGTGTTGTTAAGCTATGGTGTAGTAGCTTCGATTGATATAGTTACTTGATGCAATGAGTTATCTTCACAATTCTAATTAGAATCTGGTCTCCTTTTTCATTTTTGATGCTTTAGAGACTCCGGTTAACGAATCGTTTTCACCTTCTATGTATGACAGGGAATTTTAACTACTTTATCACAAAGTAATGGTAGATATGAATATGACTATGCGACCGTCCCCTTTCTTGCGGAAGTTTTTAAGGTGCTTTCCATTCCTTGAAGCAATGTGATTTTTTTTACTTTTTGTATCATTAATCTATATCTGAATACATATTTGTAGCTTTTAGTGTCAAGTATGTTTCTGTGGAAGGAGAGCCAGAAATCTCCTCCTCCGAAAATGACTACTGATTGGAGGACTGTTCGTTTATATCCGATACCTTCAATTATATATCTGATCCACAACAATGTTCAATTTGCTACCCTGACGTATGTAGATACATCCACATACCAGATAATGGGGAATTTGAAGATTGTCACGACTGGAATTTTGTTCAGGTGA

mRNA sequence

TTTTTTCATTTTATATTTAATATATTTTCTGAAATTAATACTCGAACGGCTTAAAATAATAATTTTCTCTTTAATAAAACACCTTTTTTTTTTAATCTCAATTTCTATGATGAGGAGATCCCGATCTCAATTTCATCTACCCGCGTACTCCGCCTCTCCTCCTCCGGATGCGTTTTTCGTTCGTCACCTCATCTCGATTTCTCGCCATTACGCTCTGGAATTCTTCGCTGTCGCCAAGCCCTAGATTTCTCTCATCTCTGATCTCTGTTGCTGCGCAGATTGCTCGAAATGCAGTGGTACATGGTCGCTTTGCTTCTTACCGTACTCACCAGTTCTCAGAAATTTTGATTGTGTTGTTAAGCTATGGTGTAGTAGCTTCGATTGATATAGGAATTTTAACTACTTTATCACAAAGTAATGGTAGATATGAATATGACTATGCGACCGTCCCCTTTCTTGCGGAAGTTTTTAAGCTTTTAGTGTCAAGTATGTTTCTGTGGAAGGAGAGCCAGAAATCTCCTCCTCCGAAAATGACTACTGATTGGAGGACTGTTCGTTTATATCCGATACCTTCAATTATATATCTGATCCACAACAATGTTCAATTTGCTACCCTGACGTATGTAGATACATCCACATACCAGATAATGGGGAATTTGAAGATTGTCACGACTGGAATTTTGTTCAGGTGA

Coding sequence (CDS)

ATGCGTTTTTCGTTCGTCACCTCATCTCGATTTCTCGCCATTACGCTCTGGAATTCTTCGCTGTCGCCAAGCCCTAGATTTCTCTCATCTCTGATCTCTGTTGCTGCGCAGATTGCTCGAAATGCAGTGGTACATGGTCGCTTTGCTTCTTACCGTACTCACCAGTTCTCAGAAATTTTGATTGTGTTGTTAAGCTATGGTGTAGTAGCTTCGATTGATATAGGAATTTTAACTACTTTATCACAAAGTAATGGTAGATATGAATATGACTATGCGACCGTCCCCTTTCTTGCGGAAGTTTTTAAGCTTTTAGTGTCAAGTATGTTTCTGTGGAAGGAGAGCCAGAAATCTCCTCCTCCGAAAATGACTACTGATTGGAGGACTGTTCGTTTATATCCGATACCTTCAATTATATATCTGATCCACAACAATGTTCAATTTGCTACCCTGACGTATGTAGATACATCCACATACCAGATAATGGGGAATTTGAAGATTGTCACGACTGGAATTTTGTTCAGGTGA

Protein sequence

MRFSFVTSSRFLAITLWNSSLSPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEILIVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR

Homology

[Close]

BLAST of Carg04934 vs. NCBI nr
Match: KAG7025306.1 (CMP-sialic acid transporter 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MRFSFVTSSRFLAITLWNSSLSPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEIL 60
           MRFSFVTSSRFLAITLWNSSLSPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEIL
Sbjct: 1   MRFSFVTSSRFLAITLWNSSLSPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEIL 60

Query: 61  IVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPP 120
           IVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPP
Sbjct: 61  IVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPP 120

Query: 121 KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 121 KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 174

[Close]

BLAST of Carg04934 vs. NCBI nr
Match: XP_022959959.1 (CMP-sialic acid transporter 1 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. NCBI nr
Match: XP_023513536.1 (CMP-sialic acid transporter 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. NCBI nr
Match: XP_023005044.1 (CMP-sialic acid transporter 1 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. NCBI nr
Match: KAG6592900.1 (CMP-sialic acid transporter 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKS PPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSAPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy Swiss-Prot
Match: B8B350 (CMP-sialic acid transporter 1 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP1 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-42
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNG+Y+YDYAT+PFLAE+FKL  SS FLWKE Q S PP+MT +WR++RLY +
Sbjct: 18  GILTTLSQSNGKYKYDYATIPFLAELFKLSFSSFFLWKECQSSSPPRMTKEWRSIRLYLV 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PS+IYLIHNNVQFATLTYVD STYQIMGNLKIVTTGILFR
Sbjct: 78  PSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy Swiss-Prot
Match: Q654D9 (CMP-sialic acid transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP1 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-42
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNG+Y+YDYAT+PFLAE+FKL  SS FLWKE Q S PP+MT +WR++RLY +
Sbjct: 18  GILTTLSQSNGKYKYDYATIPFLAELFKLSFSSFFLWKECQSSSPPRMTKEWRSIRLYLV 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PS+IYLIHNNVQFATLTYVD STYQIMGNLKIVTTGILFR
Sbjct: 78  PSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy Swiss-Prot
Match: Q8LGE9 (CMP-sialic acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=At5g41760 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.1e-39
Identity = 79/102 (77.45%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKE--SQKSPPPKMTTDWRTVRLY 134
           GILTTLSQS+G Y+YDYATVPFLAEVFKL++S +FLW+E  +  S   ++TTDW++VRL+
Sbjct: 21  GILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTTSRITTDWKSVRLF 80

Query: 135 PIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
            IPS+IYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 81  VIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 122

[Close]

BLAST of Carg04934 vs. ExPASy Swiss-Prot
Match: B8B7Q4 (CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP2 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 61  IVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFL---WKESQKS 120
           IV L+  ++ S    IL   S+  G+YEY   T  F  E  K L+S + L   W     +
Sbjct: 54  IVTLALTLLTSSQ-AILIVWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVT 113

Query: 121 PPPKMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
              +++T +  V +YPIP+I+Y++ N +Q+    YVD   YQI+ NL I++TG+L+R
Sbjct: 114 EDNRLSTSFDEVSVYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYR 169

[Close]

BLAST of Carg04934 vs. ExPASy Swiss-Prot
Match: Q6ZL17 (CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP2 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-13
Identity = 49/156 (31.41%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 22  SPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEILIVLLSYGVVASIDIGILTTLS 81
           SP  R LSS  S  + ++      G+  S++      + + LL+          IL   S
Sbjct: 22  SPGERSLSS-TSATSSLSTAGASKGK-NSWKLKSIVTLALTLLTSSQ------AILIVWS 81

Query: 82  QSNGRYEYDYATVPFLAEVFKLLVSSMFL---WKESQKSPPPKMTTDWRTVRLYPIPSII 141
           +  G+YEY   T  F  E  K L+S + L   W     +   +++T +  V +YPIP+I+
Sbjct: 82  KRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTSFDEVSVYPIPAIL 141

Query: 142 YLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           Y++ N +Q+    YVD   YQI+ NL I++TG+L+R
Sbjct: 142 YMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYR 169

[Close]

BLAST of Carg04934 vs. ExPASy TrEMBL
Match: A0A0A0K9C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042470 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.9e-53
Identity = 123/170 (72.35%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 5   FVTSSRFLAITLWNSSLSPSPRFLSSLISVAAQIARNAVVHGRFASYRTHQFSEILIVLL 64
           F TSS FL IT  NSSLS SPR+  SLISV++Q              R  +    ++ LL
Sbjct: 38  FFTSSLFLVITPSNSSLS-SPRYPRSLISVSSQ--------------RLFEMQWYIVALL 97

Query: 65  SYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTT 124
               V +   GILTTLSQSNGRY+YDYATVPFLAEVFKL VSS+FLWKESQKSPPPKMTT
Sbjct: 98  L--TVLTSSQGILTTLSQSNGRYDYDYATVPFLAEVFKLFVSSLFLWKESQKSPPPKMTT 157

Query: 125 DWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           DWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 158 DWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 190

[Close]

BLAST of Carg04934 vs. ExPASy TrEMBL
Match: A0A6J1KY15 (CMP-sialic acid transporter 1 OS=Cucurbita maxima OX=3661 GN=LOC111498154 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy TrEMBL
Match: A0A6J1H9K0 (CMP-sialic acid transporter 1 OS=Cucurbita moschata OX=3662 GN=LOC111460857 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI
Sbjct: 18  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy TrEMBL
Match: A0A6J1D9I3 (CMP-sialic acid transporter 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018599 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.5e-47
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPPKMTTDWRTVRLYPI 134
           GILTTLSQ NGRYEYDYATVPFLAEVFKLLVS MFLWKESQKSPPPKMTTDWR+VRLYPI
Sbjct: 18  GILTTLSQRNGRYEYDYATVPFLAEVFKLLVSGMFLWKESQKSPPPKMTTDWRSVRLYPI 77

Query: 135 PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 78  PSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. ExPASy TrEMBL
Match: A0A5A7SUZ9 (CMP-sialic acid transporter 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00100 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-47
Identity = 102/114 (89.47%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 61  IVLLSYGVVASIDIGILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKESQKSPPP 120
           IV L   V+ S   GILTTLSQSNGRY+YDYATVPFLAEVFKLLVSS+FLWKESQKSP P
Sbjct: 5   IVALLLTVLTSSQ-GILTTLSQSNGRYDYDYATVPFLAEVFKLLVSSLFLWKESQKSPSP 64

Query: 121 KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 65  KMTTDWRTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 117

[Close]

BLAST of Carg04934 vs. TAIR 10
Match: AT5G41760.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-40
Identity = 79/102 (77.45%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKE--SQKSPPPKMTTDWRTVRLY 134
           GILTTLSQS+G Y+YDYATVPFLAEVFKL++S +FLW+E  +  S   ++TTDW++VRL+
Sbjct: 21  GILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTTSRITTDWKSVRLF 80

Query: 135 PIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
            IPS+IYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 81  VIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 122

[Close]

BLAST of Carg04934 vs. TAIR 10
Match: AT5G41760.2 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-40
Identity = 79/102 (77.45%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 75  GILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFLWKE--SQKSPPPKMTTDWRTVRLY 134
           GILTTLSQS+G Y+YDYATVPFLAEVFKL++S +FLW+E  +  S   ++TTDW++VRL+
Sbjct: 21  GILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTTSRITTDWKSVRLF 80

Query: 135 PIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
            IPS+IYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR
Sbjct: 81  VIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 122

[Close]

BLAST of Carg04934 vs. TAIR 10
Match: AT4G35335.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-13
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 76  ILTTLSQSNGRYEYDYATVPFLAEVFKLLVSSMFL---WKESQKSPPPKMTTDWRTVRLY 135
           IL   S+  G+YEY   T  FL    K  +S + L   WK    +   +++T +  V+++
Sbjct: 67  ILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTTFDEVKVF 126

Query: 136 PIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFR 175
           PIP+ +YL  N +Q+    YVD   YQI+ NL I++TG+L+R
Sbjct: 127 PIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR 168

The following BLAST results are available for this feature:

BLAST of Carg04934 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025306.1	7.2e-89	100.00	CMP-sialic acid transporter 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959959.1	1.6e-48	100.00	CMP-sialic acid transporter 1 [Cucurbita moschata]	[more]
XP_023513536.1	1.6e-48	100.00	CMP-sialic acid transporter 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023005044.1	1.6e-48	100.00	CMP-sialic acid transporter 1 [Cucurbita maxima]	[more]
KAG6592900.1	1.4e-47	99.00	CMP-sialic acid transporter 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg04934 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B350	5.3e-42	81.00	CMP-sialic acid transporter 1 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP1 P...	[more]
Q654D9	5.3e-42	81.00	CMP-sialic acid transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP1...	[more]
Q8LGE9	7.1e-39	77.45	CMP-sialic acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=At5g41760 PE=2 ...	[more]
B8B7Q4	6.7e-13	35.90	CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP2 P...	[more]
Q6ZL17	8.8e-13	31.41	CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP2...	[more]

BLAST of Carg04934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C1	6.9e-53	72.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042470 PE=3 SV=1	[more]
A0A6J1KY15	7.9e-49	100.00	CMP-sialic acid transporter 1 OS=Cucurbita maxima OX=3661 GN=LOC111498154 PE=3 S...	[more]
A0A6J1H9K0	7.9e-49	100.00	CMP-sialic acid transporter 1 OS=Cucurbita moschata OX=3662 GN=LOC111460857 PE=3...	[more]
A0A6J1D9I3	2.5e-47	97.00	CMP-sialic acid transporter 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7SUZ9	4.3e-47	89.47	CMP-sialic acid transporter 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Carg04934 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41760.1	5.1e-40	77.45	Nucleotide-sugar transporter family protein	[more]
AT5G41760.2	5.1e-40	77.45	Nucleotide-sugar transporter family protein	[more]
AT4G35335.1	5.3e-13	36.27	Nucleotide-sugar transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007271	Nucleotide-sugar transporter	PFAM	PF04142	Nuc_sug_transp	coord: 79..171 e-value: 5.2E-10 score: 39.0
IPR007271	Nucleotide-sugar transporter	PANTHER	PTHR10231	NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER	coord: 68..174
None	No IPR available	PANTHER	PTHR10231:SF43	UDP-GALACTOSE TRANSLOCATOR	coord: 68..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04934-RA	Carg04934-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport
biological_process	GO:0015739	sialic acid transport
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity
molecular_function	GO:0015136	sialic acid transmembrane transporter activity