Carg04804 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04804
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	Carg_Chr13: 9203126 .. 9207367 (-)
RNA-Seq Expression	Carg04804
Synteny	Carg04804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGTATTCAGATTACTACGAATTTGTTCCTATTAATTTTCTTCGCTATTCAATTTGTCCGCAGTTCTTTTGGCTGAGGGTTCTTTGTCCTTAATCCTAAATTTGAGGAAAGGTTTTTGAGAAATTTCGGTTTGCTGTTGAACATTTGCATAATTCCTGGATTTATGGAGACAGAAGCTTTTGGCTGCGTAATGGGAAGAATAAAAATTATTAACCGGGAAAATCTGATCATCTGCATGTAGAATGATAATTTTCCTGTTTGTATGAATTTTACTGATGCATTATGGAGGAAAGCAACAAATGAAACCAAATTATAGTTCAGAGGTAGATCTGAATCTTTTTGTTTGTGTGTGTGAACGGTGCAGTAGTATAAAAAGTTCATAACTAAAATCTGTATTTTCTTCTGGAGTTGGATTTGGAGTGGGCAAAACCTAACTAGGATTAGTGGGGTGGGTTACCAGCATTGAGCGGAACTTCCCCTGTTATTAGGGAAAAAAGGCTAAACCCTAGCATCTAGTAAATATTTCATGCTAACATTTCAACATTTCTATCATGGTGAATTAATATCTCAAAATGTAGGGATCAACAAAACTAGCAAGAAAGCTCAATGACCTAGTGGATTATTTAGAATTTGATGATCAAAATGAACAGGAAAGGCTATAGTTTAGCTACCATAACAACAGCGTAACAGTCTACATCGTTTTCTTTTATTTTTATCCACATACTTGCAGAGTCCTGAGACAATTTATAAGTTACAGAATTTACTGGAACCTATTAGAATTGCTACTTAGCAAATGGTTTCCACTAGAAGCAGATTGTCACAACCTTACTCTGGTTGTGACCCTCACGTTGCGACAAGTAAAGCGGCGACCCTCTAGTGGTGTCCATTTGGCCACGCGAGGGTCTAGATGAGTGTCATAATGCGACCGAGGAGGACGGTGTATCATCTAACACACCGCATAGAGTGGACATTGAAAAGAAGATAAGACATAAACAAGATAAGGGTCCTTGGGTAGGGCCCGTGCCTTAACCTCGAAAGTCGAGGTTCTAAATGGAATTTGGGCATGCGGTTCTAGAGCCAAGTCTGTCCATATGAAATATGAATGCTCACTAAATTTGGTATCAATCCTACACTGGATGGACGCTCCAAAACACCGTTTGACCGTTCGTCAAAATGATGTCTATCCGATAAAGATTGGAAATGCCTCAAAATGTACCTGGGAAGCATAGTATCAACTATCTACCACTCATAAGCTCTGTGGCCTAAGCGAGCTACCCTGTGGCACATGTGTGTGTCATAGTGAGGGCGAGCGTTCTGAGACGAGTGTCTCAGACAATTTTCTTTGAAATGAGTCTTTTAAGGATAGTACCGGGTGAATGAACCAAATGGGTTTCTCCATACAAAAAGTTCATGATACAAAATAAAGGCTAGGATGTTTAGATCCTCCTTATACACTCTAAAAAAACCTTTAAATTTTTTGTTTGAGATAAATATTAATGACCTATTTTAGACGTTTATATTATTGGATAATCTTGGATGACAAACTGATGTAGCGTCAGTTTGGTCCTTCGCTAGGTCTCACGTTTCCTTGTGGGTTTCGATTACAAAATTTTATTATTATTATTATTTTTAGTAAAGATTAGCTTAGTATTATCTTGTTTGATTGGAGGCCTTTCCTTTAGTTTGCCTTCGTCTTTGTGGGCTCTCTTTTTTGTATGCCCGTGTATTCTTTTTCTTTTTCAATGTAAGTTTGGTGATTCATTAAAAAAAAATTGATGGTGACTGTTAAACTTTACATGGTCCATAAGCTGAGACTAGTCTAGTTTAGAGCCTGGGCTGCATTTAGTTAAGAACTTCTTGTTTATAACACATGGACAAAAAGTGAACACTTGGGAATATATCTATTAATAGATGAGCTCACATGAATCTGAGGCAGCTTTGAGTAGCAATTTTCCTAAGCATTGTACATTTTTCTACCTGCAAAGGTGTGGTGGCGGTTCATTTTATTTTATGTTGGAACTTACCTGATATCTTCATACAATATTACTCATTTATATTTTCCATGTTTGTCATAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGTACAAAACAGTTTTCATTTGAATGTATGTCACGTATAAGCAACTAAAGATGTGTATGCATTGGAGAAGGCTTAGCTTCGAACATAATTTTCATCTTCAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGTAATGTACTCTTTTCACCCCTTAGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATGTACATATATAGAGATACTTCATAAACAAATAAACTTCAATTTATGAATACCATGTTCACTCTAGTTATGTTATGAGTTGTACACACAAACACATCTTCTTTCTCAGTTGACTTGTTTTTACTTGACTTCCATGTGGTTTGTTGTGCATTCTGATCTTTCTTGTGCATTCTGATCTTTCTTGTATCTTTCTGGTAATAACCCAATCTCATCGTCAGTAGATATTGTCTTCTTTGAGCTTTTCCTTTCGAGCCTACCTTTAAGGTATTTAGAATGTGTCTGCTAGGGAGAGGTTTTCACACCCTTAATCGGGATGGTAGGACGTATTTTGGGTAAATATGTGCAATATTCTTCCCTTGGTCCCATCCCCATGCGTACATTGAGAAGAATTCTAAAATTGCTGTTCTCTCTGTTGCTTGGTATAAAACCCATCGGTACAAGAAATATTCTTTTTATAGATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTACCAGTTCCTGTCTTTCCAGTTATGGGAGAGAGCTCTGAACGGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCTAGAGGGTAAAGAGGGTCAGTAATCACCTCTTAATGAAGAATTTATATATCCATCAATCTCCTATTCACTTCTTTTGAAAGGTTAAAGAAGTCATAGGATTAACTGTCAACTAATCAAGTCCAGCCTTTCCTTTTGGACTCTCTTCGAGGTTTTTAAAACGCTTCGGTCAGGGAGAGGTTTCCATACCCTTATAAAGAATGTTTCGTTTCCCTTTCCAATTGATGTGAGATTTCACATTTCACACAACCATAGCAGTGCTTTCCATATTAGCTTCTTCATCTTGTAGCCATGAGAAAAGTAGTTGCTATATTTGGAAGTCTTTTGAATACACCTGTGAATGTAATATTGCAGGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATAAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACTGTATACAATCTTAAACTTATCACTTTGTATCAAGTTATTCGTGAAGAGGAATTTACACTCTTGAGGGTGAAATAGGAAAGTTGTTCCTTCCCATAACTTTTTTGTGCCTCTAAACTATGTTAGGGAGTTTCATAAATCAAAATATCGT

mRNA sequence

AATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATAAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACTGTATACAATCTTAAACTTATCACTTTGTATCAAGTTATTCGTGAAGAGGAATTTACACTCTTGAGGGTGAAATAGGAAAGTTGTTCCTTCCCATAACTTTTTTGTGCCTCTAAACTATGTTAGGGAGTTTCATAAATCAAAATATCGT

Coding sequence (CDS)

ATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATAAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAA

Protein sequence

MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGLRKRKVGCTNSCIRDSTWTALELLQQLQVGPISYLYCYYFFPYLL

Homology

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BLAST of Carg04804 vs. NCBI nr
Match: KAG7019954.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475.7 bits (1223), Expect = 2.3e-130
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDGLRKRKVGCTNSCIRDSTWTALELLQQLQVGPISYLYCYYFFPYLL 233
           IEPASDGLRKRKVGCTNSCIRDSTWTALELLQQLQVGPISYLYCYYFFPYLL
Sbjct: 181 IEPASDGLRKRKVGCTNSCIRDSTWTALELLQQLQVGPISYLYCYYFFPYLL 232

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BLAST of Carg04804 vs. NCBI nr
Match: KAG6584370.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDG 188
           IEPASDG
Sbjct: 181 IEPASDG 187

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BLAST of Carg04804 vs. NCBI nr
Match: XP_022924035.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 4.5e-102
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDG 188
           IEPASDG
Sbjct: 181 IEPASDG 187

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BLAST of Carg04804 vs. NCBI nr
Match: XP_023000891.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 3.3e-97
Identity = 181/188 (96.28%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLR GAMEAAICGRV ISPYHF NPTR GDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLREGAMEAAICGRVSISPYHFFNPTRSGDKYYFH 60

Query: 61  KPCRNRSIL-MLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120
           KPCR+RSIL MLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN
Sbjct: 61  KPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120

Query: 121 YNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180
           YNKREYVVQVLMKVIPGMT+DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS
Sbjct: 121 YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180

Query: 181 SIEPASDG 188
           SIEPASDG
Sbjct: 181 SIEPASDG 188

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BLAST of Carg04804 vs. NCBI nr
Match: XP_023519501.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 2.1e-83
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIEKT 91
           MEAAICGRVPISPYHF N TRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIEKT
Sbjct: 1   MEAAICGRVPISPYHFFNSTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIEKT 60

Query: 92  TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH 151
           TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH
Sbjct: 61  TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH 120

Query: 152 NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG
Sbjct: 121 NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 156

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BLAST of Carg04804 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-60
Identity = 117/159 (73.58%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  EKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           EKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           AH NG++VVIVCAQ DAE HCMQLRGNGL SS+EP   G
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGG 158

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BLAST of Carg04804 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-22
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 80  GGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTV 139
           GG++D PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 140 DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 184
           D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP 159

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BLAST of Carg04804 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-18
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 105 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 164
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 165 AEDHCMQLRGNGLQSSIEP 184
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Carg04804 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 105 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 164
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 165 AEDHCMQLRGNGLQ 179
           AE +C QL+ +GL+
Sbjct: 75  AEFYCEQLKSHGLE 88

[Close]

BLAST of Carg04804 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 92  TPGRESEFD--VRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEA 151
           +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 152 HHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 184
           H+ G+ +VIVC    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Carg04804 vs. ExPASy TrEMBL
Match: A0A6J1EDN1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431582 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.2e-102
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDG 188
           IEPASDG
Sbjct: 181 IEPASDG 187

[Close]

BLAST of Carg04804 vs. ExPASy TrEMBL
Match: A0A6J1KH35 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495194 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.6e-97
Identity = 181/188 (96.28%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLR GAMEAAICGRV ISPYHF NPTR GDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLREGAMEAAICGRVSISPYHFFNPTRSGDKYYFH 60

Query: 61  KPCRNRSIL-MLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120
           KPCR+RSIL MLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN
Sbjct: 61  KPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120

Query: 121 YNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180
           YNKREYVVQVLMKVIPGMT+DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS
Sbjct: 121 YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180

Query: 181 SIEPASDG 188
           SIEPASDG
Sbjct: 181 SIEPASDG 188

[Close]

BLAST of Carg04804 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.9e-75
Identity = 140/157 (89.17%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSIL-MLSVAALGRGGGLLDKPTIEK 91
           MEAAICGR+P+SPYHF N TRPGDKYYFHK CRNRSIL MLSVA LG+GGGLL+KPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEF+VRKSRKIAPPY+VLLHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           +NGM+VVI+CAQVDAEDHCMQLRGNGL SSIEPASDG
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDG 157

[Close]

BLAST of Carg04804 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.9e-75
Identity = 140/157 (89.17%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRS-ILMLSVAALGRGGGLLDKPTIEK 91
           MEAAICGRVP+SP HF N TRPGDKYYFHK CRNRS ++MLSVA LG+GGGLL+KPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEFDVRKSRK APPY+VLLHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           +NGMSVVI+CAQVDAEDHCMQLRGNGL SSIEPASDG
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDG 157

[Close]

BLAST of Carg04804 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 139/157 (88.54%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSIL-MLSVAALGRGGGLLDKPTIEK 91
           MEAAICGR+P+SPYHF N TRPGDKYYFHK CRNRSIL MLSVA LG+GGGLL+KP  EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEF+VRKSRKIAPPY+VLLHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           +NGM+VVI+CAQVDAEDHCMQLRGNGL SSIEPASDG
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDG 157

[Close]

BLAST of Carg04804 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 232.6 bits (592), Expect = 3.1e-61
Identity = 117/159 (73.58%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  EKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           EKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
           AH NG++VVIVCAQ DAE HCMQLRGNGL SS+EP   G
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGG 158

[Close]

BLAST of Carg04804 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-40
Identity = 90/159 (56.60%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  EKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           EKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDG 188
                          DAE HCMQLRGNGL SS+EP   G
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEPDGGG 128

The following BLAST results are available for this feature:

BLAST of Carg04804 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019954.1	2.3e-130	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyr...	[more]
KAG6584370.1	2.0e-102	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_022924035.1	4.5e-102	99.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_023000891.1	3.3e-97	96.28	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_023519501.1	2.1e-83	98.72	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Carg04804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	4.4e-60	73.58	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.2e-22	54.81	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	3.2e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.1e-15	55.41	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	3.1e-13	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Carg04804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDN1	2.2e-102	99.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1KH35	1.6e-97	96.28	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1K0P0	2.9e-75	89.17	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1C511	2.9e-75	89.17	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1GS56	1.1e-74	88.54	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of Carg04804 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.1e-61	73.58	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	1.0e-40	56.60	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 106..183 e-value: 1.0E-20 score: 75.4
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 105..183
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 108..174 e-value: 1.8E-18 score: 66.1
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 32..187
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 91..185 score: 14.987559
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 32..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04804-RA	Carg04804-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity