Carg04731 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04731
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small glutamine-rich tetratricopeptide repeat-containing protein beta
Location	Carg_Chr13: 9598784 .. 9602026 (-)
RNA-Seq Expression	Carg04731
Synteny	Carg04731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTTCTACTTCCATTTCCCTTACCCCTATTCGTGCTCAGAACCAGGAGATTCGGGTTTGCACCAATCGCACTTGCCGACGTCAAGGTTCCTTTCAGACACTCGAAACTCTCAGCGCCCTCGCACCTCCCACTATTACCGTCAATCCCTCTGGTTGCTTGGGGAAGTGCGGCGCTGGCCCTAACGTCGCTGTTTTGCCCGATGGATTCGTCGTCGGCCATTGCGCCACGCCTGCTCGTGCTGCCGAGGTCATCATGCAATTGTCTGGTGGAGTTTCTGATTCTCTTGGCGTCTCTAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGGGCCGAATGTGAGGTGGAGGACGGGAATTTCTCTCAGGCTGACCTACTTCTTTCGAAGGTAAACTGTTCCGCCTTTTGCTGTGTGATCTCATTGATTAGTAAGTTTCCACTCTTCCTTCTTGGAACTTTGTTCAGAATAATACATTGTGTATGATGCCTTGATTCAATTTGTTGCAGGCGATAGAATTAAAACCATGTGGAGGTATCCATATAATATTCAAGGACAGGTGTTCTACTTCTAGTTCCACGTTGTATCTTATTGTATACAAATCGTCGACTATATTTCCTTCCAATAGTAAATTTGGTAACAATCGTTGAGTTTACGATAATTGTTAGTACTCATTCAATTTTAAGTCCCGAAGTTCTTCCCAAATGCTCTATGCTGTTGATTTTATCCTACGTCTCTCTAGCATTTGTTTACTTTTTTTTTTTTTCTTTATCTATATCTTTACTAAAGCAGCTGTATCCAAAAAATTTAGTTACACAGACTATTAAATTTTCAGGTCCATCGTCAGATTGGCTCTGGGGAATCATGCTGGTGCCCTTGAAGATGCAAATGAGGCTCTAAGAGTAGCTCCTCGATATCCCGAGGTGAGAAGTATTTTAGTTAATCTCCATGTGCATTACATTCCATCTAAAAAATTAACTAGGCCGTTACACTTCAACGACGAAGGGAGAAAATGTTTGAAACTACCAATCTGGAGACCAGGTAGTAGTACCTCAAATTATTGACAAGATCTACGATAAATAGAGTTCCGATTTCTTCCACTTCAAATGTTCTTAAGCAGATTTGTATAGTGCCAAGCTCTAGGTGTCAAGAGCAAAAGAAAATTCGGAGGATAACAGAAAAACTTTGGACGTGAACATCATCTATAATTGTAAATTCGGGTATCAACTTTTTGTTGGGCTTCTTGAGTCTTTGTGATGCATGAATCTTTATGTTAGGATTAAAAATGAATACCACTCGATTTTAGTTTAAAATTTGCCAGGACACACATGGATGGATGTAAAGAAAAGAACTATGTTTAAAATTCAAAAGAAGGATGATGCTAAACTGTAATTTAGAGGTCCTTCGAACCCTCACCCAACTAATAAACAAGCAACCCTTCGAAGATCATTACAAATTCTTGTCCTTTAACCGGTAAGATATGGGAAAAAAGGAGTCTAGCCCTGGAGTAAATTATCGTAATGTTCCCTAGACATGTTTCCTAATTTTCAATTTTCAGGCTTACATTTGTCAAGGTGACGTATTCTTATCTATGGACCATTTTGATTCGGCTGAGATGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGCCGTTCAAAGTCATTCAAGGTATTGATTCACTTATCTTAATATGAGGAGACTATGGGCAATTTCATTTCTAGGACAAAAGAGCAACCGCTTCAATCCATCAATTTTCAGGAATTTTGCCTGATTCTTCTTCTTCTTTTCTTTCTAGTTTTTGTTTTGGAGGTAGCACTGGGAAACAAATGCAAAATGGTTTCCATTGAAATGTTGGTTGGAATTGGCTAGAAGAATTTTTATCGCTAATTTTTCTGTTTTTGAGGGAGAAATTCTTTATTTTTTTAAGTTAAAAAAAACATTTTCAAAATGTTGTTCTCGTTGATGACAAACCTATATTTCAGAACTACTTCAAACTTAATGACAAACCACTTAATTGAAGCGTTTGCCATCTAATTTTCTCACTTAACTCTTTCAAGCATACCCTTTTGAATATGTATTCTCGTCATTTTACAAAATATGATTGAATTCAGTTTTTGCCCAGTGCTGCTAGAATGCCCGTTCAATATTCATTTAATATTTGCACACCATTTCTTCAATAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTCAATGCTGTGAGAACACAATAAAATCTGAGATGTGAATCAAGGAATAAGAATAATTGATGACAACAGTTCGAGATTCAGTCATTCCTTCAGGTTGTTTCCAGGTTTCAAATTTCTGACTCAGATTGTTGTTGAAATCTTATTAGGTTAACTACATAGAAATTCGATGCAGTTTGGAGTTTCATGAAAATTTGATTGGGAATTCGTACAATTCTGCATGAGAATGCTTTTGATCCCAGGAAATATAAGCGGCCAAGTGCATTGGATTGTAGAGTAATTGTTCCCCAATGGGTTATTTTATAGTGTCCTCCTCGTTCCTACCCTGCCACTATGGTCTTCGAGCTTAAAAAGAATGTCTAGAGATTAATAATTTTAAGAATTTTTAGGTTTGAGATAATTCCTAATCATTTTCATGTTGGAGGAAAAATCACGCAATTTCGCTATCTCACAGTCATTATTCTTAGGGCATGCACTCACATGGAGAAAGTGATTCCTAACATGAACAGGAAGATGGAAAATTTGATTTGGGATTCTGAAGTTTGCTTATAAATAGGATTGCTACTGGGCATGAATTAGTATAGCAGCCAAAGGGTTCGAGTCCATGGTTAATAGTGTTCAAAATTTTCAAATCAGAAACTTCTCTGCCAAACTTATTTTTCAAGTAAGCGAACACATTTCATTTCTTTGGATACAGATTAAGCAAATAAATACACACTTTGGCCCCTATCCCGAACTCTGCACTTGCTGATTTTTCTGCTTGGAATGTTTCTCTCTTGTGGCAATCTCAATGATAGGAAAACTTTATACATCTTCCATTACTTGCTTTCTCTATAATATTGTTCTTTCAACCGATGGAGTAGGTTTTGAAAGTGATTGATCAGGCTTTTGCCATTGAAATTGTCCCTTGACTTCCAGTAAATAGGAACCTCTGGGACTGGGCATTTTCCAAATGTCTTTCCAGGACTAAGAGCCTATTTGAAATGACTTCTTTCTAAGTATTAAATGCCAATCTTTTTTAAGTACTTGGAAACC

mRNA sequence

TTCTCTTCTACTTCCATTTCCCTTACCCCTATTCGTGCTCAGAACCAGGAGATTCGGGTTTGCACCAATCGCACTTGCCGACGTCAAGGTTCCTTTCAGACACTCGAAACTCTCAGCGTCTCTAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGGGCCGAATGTGAGGTGGAGGACGGGAATTTCTCTCAGGCTGACCTACTTCTTTCGAAGGCGATAGAATTAAAACCATGTGGAGGTATCCATATAATATTCAAGGACAGGTCCATCGTCAGATTGGCTCTGGGGAATCATGCTGGTGCCCTTGAAGATGCAAATGAGGCTCTAAGAGTAGCTCCTCGATATCCCGAGGCTTACATTTGTCAAGGTGACGTATTCTTATCTATGGACCATTTTGATTCGGCTGAGATGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGCCGTTCAAAGTCATTCAAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTCAATGCTGTGAGAACACAATAAAATCTGAGATGTGAATCAAGGAATAAGAATAATTGATGACAACAGTTCGAGATTCAGTCATTCCTTCAGGGCATGCACTCACATGGAGAAAGTGATTCCTAACATGAACAGGAAGATGGAAAATTTGATTTGGGATTCTGAAGTTTGCTTATAAATAGGATTGCTACTGGGCATGAATTAGTATAGCAGCCAAAGGGTTCGAGTCCATGGTTAATAGTGTTCAAAATTTTCAAATCAGAAACTTCTCTGCCAAACTTATTTTTCAAGTAAGCGAACACATTTCATTTCTTTGGATACAGATTAAGCAAATAAATACACACTTTGGCCCCTATCCCGAACTCTGCACTTGCTGATTTTTCTGCTTGGAATGTTTCTCTCTTGTGGCAATCTCAATGATAGGAAAACTTTATACATCTTCCATTACTTGCTTTCTCTATAATATTGTTCTTTCAACCGATGGAGTAGGTTTTGAAAGTGATTGATCAGGCTTTTGCCATTGAAATTGTCCCTTGACTTCCAGTAAATAGGAACCTCTGGGACTGGGCATTTTCCAAATGTCTTTCCAGGACTAAGAGCCTATTTGAAATGACTTCTTTCTAAGTATTAAATGCCAATCTTTTTTAAGTACTTGGAAACC

Coding sequence (CDS)

TTCTCTTCTACTTCCATTTCCCTTACCCCTATTCGTGCTCAGAACCAGGAGATTCGGGTTTGCACCAATCGCACTTGCCGACGTCAAGGTTCCTTTCAGACACTCGAAACTCTCAGCGTCTCTAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGGGCCGAATGTGAGGTGGAGGACGGGAATTTCTCTCAGGCTGACCTACTTCTTTCGAAGGCGATAGAATTAAAACCATGTGGAGGTATCCATATAATATTCAAGGACAGGTCCATCGTCAGATTGGCTCTGGGGAATCATGCTGGTGCCCTTGAAGATGCAAATGAGGCTCTAAGAGTAGCTCCTCGATATCCCGAGGCTTACATTTGTCAAGGTGACGTATTCTTATCTATGGACCATTTTGATTCGGCTGAGATGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGCCGTTCAAAGTCATTCAAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTCAATGCTGTGAGAACACAATAA

Protein sequence

FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ

Homology

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BLAST of Carg04731 vs. NCBI nr
Match: KAG7020025.1 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSVSKSLEALALRKRAECEVEDG 60
           FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSVSKSLEALALRKRAECEVEDG
Sbjct: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSVSKSLEALALRKRAECEVEDG 60

Query: 61  NFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYI 120
           NFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYI
Sbjct: 61  NFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYI 120

Query: 121 CQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ 173
           CQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ
Sbjct: 121 CQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ 172

[Close]

BLAST of Carg04731 vs. NCBI nr
Match: XP_022923908.1 (small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1 [Cucurbita moschata])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 171/230 (74.35%), Postives = 172/230 (74.78%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS--------------------- 60
           FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS                     
Sbjct: 21  FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSALAPPTITVNPSGCLGKCGAG 80

Query: 61  -------------------------------------VSKSLEALALRKRAECEVEDGNF 120
                                                VSKSLEALALRKRAECEVEDGNF
Sbjct: 81  PNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSLGVSKSLEALALRKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 173
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 200

[Close]

BLAST of Carg04731 vs. NCBI nr
Match: XP_023519354.1 (small glutamine-rich tetratricopeptide repeat-containing protein beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 171/230 (74.35%), Postives = 171/230 (74.35%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS--------------------- 60
           FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS                     
Sbjct: 21  FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSALAPPTITVNPSGCLGKCGAG 80

Query: 61  -------------------------------------VSKSLEALALRKRAECEVEDGNF 120
                                                VSKSLEALAL KRAECEVEDGNF
Sbjct: 81  PNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSLGVSKSLEALALWKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 173
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 200

[Close]

BLAST of Carg04731 vs. NCBI nr
Match: KAG6584438.1 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 169/229 (73.80%), Postives = 169/229 (73.80%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS--------------------- 60
           FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS                     
Sbjct: 21  FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSALAPPTITVNPSGCLGKCGAG 80

Query: 61  -------------------------------------VSKSLEALALRKRAECEVEDGNF 120
                                                VSKSLEALALRKRAECEVEDGNF
Sbjct: 81  PNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSLGVSKSLEALALRKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 172
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 200

[Close]

BLAST of Carg04731 vs. NCBI nr
Match: XP_023001358.1 (uncharacterized protein LOC111495518 [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 1.8e-76
Identity = 166/230 (72.17%), Postives = 170/230 (73.91%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLET----------------------- 60
           FSSTS+SLTPIRAQNQEIRVCTNRTCRRQGSFQTLET                       
Sbjct: 21  FSSTSVSLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLCALAPPTITVNPSGCLGKCGAG 80

Query: 61  -----------------------------------LSVSKSLEALALRKRAECEVEDGNF 120
                                              L VSKSLEALALRKRAECEVEDGNF
Sbjct: 81  PNVAVFPDGFVVGHCATPARAAEVIMRLSGGVSDSLGVSKSLEALALRKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 173
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGN+A ALEDANEALRVAP+YPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNYAAALEDANEALRVAPQYPEAYICQ 200

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BLAST of Carg04731 vs. ExPASy Swiss-Prot
Match: Q32LM2 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus OX=9913 GN=SGTA PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-08
Identity = 42/125 (33.60%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 39  SVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNH 98
           S   S EA  L+     +++  NF  A     KAIEL P   ++  F +R+     LGN+
Sbjct: 84  SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY--FCNRAAAYSKLGNY 143

Query: 99  AGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKAR 158
           AGA++D   A+ + P Y +AY   G    S++    A   Y  ALE+DP     KS   +
Sbjct: 144 AGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKS-NLK 203

Query: 159 VAKLQ 164
           VA+L+
Sbjct: 204 VAELR 205

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BLAST of Carg04731 vs. ExPASy Swiss-Prot
Match: O43765 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens OX=9606 GN=SGTA PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 39  SVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNH 98
           S   S EA  L+     +++  NF  A     KAIEL P   ++  F +R+     LGN+
Sbjct: 84  SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY--FCNRAAAYSKLGNY 143

Query: 99  AGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS-FKA 158
           AGA++D   A+ + P Y +AY   G    S++    A   Y  ALE+DP     KS  K 
Sbjct: 144 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 203

Query: 159 RVAKLQE 165
              KL+E
Sbjct: 204 AELKLRE 208

[Close]

BLAST of Carg04731 vs. ExPASy Swiss-Prot
Match: Q8BJU0 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus OX=10090 GN=Sgta PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-08
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 39  SVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNH 98
           S   S EA  L+     +++  NF  A  L  KAIEL P   ++  F +R+     LGN+
Sbjct: 85  SEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVY--FCNRAAAYSKLGNY 144

Query: 99  AGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS-FKA 158
            GA++D   A+ + P Y +AY   G    S++    A   Y  ALE+DP     KS  K 
Sbjct: 145 VGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKI 204

Query: 159 RVAKLQE 165
              KL+E
Sbjct: 205 AELKLRE 209

[Close]

BLAST of Carg04731 vs. ExPASy Swiss-Prot
Match: O70593 (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus OX=10116 GN=Sgta PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-08
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 39  SVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNH 98
           S   S EA  L+     +++  NF  A  L  KAIEL P   ++  F +R+     LGN+
Sbjct: 84  SEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVY--FCNRAAAYSKLGNY 143

Query: 99  AGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS-FKA 158
            GA++D   A+ + P Y +AY   G    S++    A   Y  ALE+DP     KS  K 
Sbjct: 144 VGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKI 203

Query: 159 RVAKLQE 165
              KL+E
Sbjct: 204 AELKLRE 208

[Close]

BLAST of Carg04731 vs. ExPASy Swiss-Prot
Match: Q9LNB6 (Hsp70-Hsp90 organizing protein 1 OS=Arabidopsis thaliana OX=3702 GN=HOP1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 50  RKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEAL 109
           + +       G+F+ A    ++AI L P    H++F +RS    +L  +A AL DA E +
Sbjct: 6   KAKGNAAFSSGDFTTAINHFTEAIALAPTN--HVLFSNRSAAHASLHQYAEALSDAKETI 65

Query: 110 RVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS 155
           ++ P +P+ Y   G   L ++ F+ A  +Y   L++DP+    KS
Sbjct: 66  KLKPYWPKGYSRLGAAHLGLNQFELAVTAYKKGLDVDPTNEALKS 108

[Close]

BLAST of Carg04731 vs. ExPASy TrEMBL
Match: A0A6J1EAV3 (small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431489 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 171/230 (74.35%), Postives = 172/230 (74.78%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS--------------------- 60
           FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLS                     
Sbjct: 21  FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSALAPPTITVNPSGCLGKCGAG 80

Query: 61  -------------------------------------VSKSLEALALRKRAECEVEDGNF 120
                                                VSKSLEALALRKRAECEVEDGNF
Sbjct: 81  PNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSLGVSKSLEALALRKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 173
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 200

[Close]

BLAST of Carg04731 vs. ExPASy TrEMBL
Match: A0A6J1KQA5 (uncharacterized protein LOC111495518 OS=Cucurbita maxima OX=3661 GN=LOC111495518 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.8e-77
Identity = 166/230 (72.17%), Postives = 170/230 (73.91%), Query Frame = 0


Query: 1   FSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLET----------------------- 60
           FSSTS+SLTPIRAQNQEIRVCTNRTCRRQGSFQTLET                       
Sbjct: 21  FSSTSVSLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLCALAPPTITVNPSGCLGKCGAG 80

Query: 61  -----------------------------------LSVSKSLEALALRKRAECEVEDGNF 120
                                              L VSKSLEALALRKRAECEVEDGNF
Sbjct: 81  PNVAVFPDGFVVGHCATPARAAEVIMRLSGGVSDSLGVSKSLEALALRKRAECEVEDGNF 140

Query: 121 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQ 173
           SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGN+A ALEDANEALRVAP+YPEAYICQ
Sbjct: 141 SQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNYAAALEDANEALRVAPQYPEAYICQ 200

[Close]

BLAST of Carg04731 vs. ExPASy TrEMBL
Match: A0A0A0LQA2 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031840 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64
Identity = 148/235 (62.98%), Postives = 164/235 (69.79%), Query Frame = 0


Query: 1   FSSTSISLTP---IRAQ--NQEIRVCTNRTCRRQGSFQTLETLS---------------- 60
           FSS+S S++    I AQ  +QEIRVCTNRTCRRQGSF  LE L+                
Sbjct: 23  FSSSSDSISKRSLIHAQTHHQEIRVCTNRTCRRQGSFHALEILNALAPPNIVVNPSGCLG 82

Query: 61  ------------------------------------------VSKSLEALALRKRAECEV 120
                                                     +SKSLEALALRKRA+CE+
Sbjct: 83  KCGAGPNVAVLPDGFVVGHCGTPARAADLIIQLSGQDSDSVGISKSLEALALRKRAQCEL 142

Query: 121 EDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPE 173
           EDGNFSQA+LLLS+AI+LKPCGGIHIIFKDRSIVRLALGNH+GALEDANEALRVAP+Y E
Sbjct: 143 EDGNFSQAELLLSQAIDLKPCGGIHIIFKDRSIVRLALGNHSGALEDANEALRVAPQYLE 202

[Close]

BLAST of Carg04731 vs. ExPASy TrEMBL
Match: A0A1S3AUF9 (tetratricopeptide repeat protein 1 OS=Cucumis melo OX=3656 GN=LOC103482942 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.6e-63
Identity = 148/235 (62.98%), Postives = 163/235 (69.36%), Query Frame = 0


Query: 1   FSSTSISL---TPIRAQ--NQEIRVCTNRTCRRQGSFQTLETLS---------------- 60
           FSS+S S+   + I AQ  +QEIRVCTNRTCRRQGSF  LE LS                
Sbjct: 23  FSSSSDSISKRSSIHAQTHHQEIRVCTNRTCRRQGSFLALEILSALAPPTIVVNPSGCLG 82

Query: 61  ------------------------------------------VSKSLEALALRKRAECEV 120
                                                     VSKSLEALALRKRA+CE+
Sbjct: 83  KCGAGPNVAVLPDGFVIGHCGTPARAADLIIQLSGRDSDSVGVSKSLEALALRKRAQCEL 142

Query: 121 EDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPE 173
           EDGNFSQA+LLLS+AI+L PCGGIHIIFKDRS+VRLALGNH+GALEDANEALRVAP+Y E
Sbjct: 143 EDGNFSQAELLLSQAIDLIPCGGIHIIFKDRSVVRLALGNHSGALEDANEALRVAPQYLE 202

[Close]

BLAST of Carg04731 vs. ExPASy TrEMBL
Match: A0A6J1C6P2 (sperm-associated antigen 1 OS=Momordica charantia OX=3673 GN=LOC111008751 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.8e-61
Identity = 145/232 (62.50%), Postives = 156/232 (67.24%), Query Frame = 0


Query: 3   STSIS---LTPIR--AQNQEIRVCTNRTCRRQGSFQTLET-------------------- 62
           STSIS    +PIR  A NQEIRVCTNRTCRRQGSFQTLET                    
Sbjct: 25  STSISRYKRSPIRFHAHNQEIRVCTNRTCRRQGSFQTLETLNGLAPPTITVNSCGCLGKC 84

Query: 63  ----------------------------------------LSVSKSLEALALRKRAECEV 122
                                                   LSVSKSLEALALRKRAE E+
Sbjct: 85  GAGPNVAVLPDGFVVGHCGTPARAAELMMGLSGSGGGYDPLSVSKSLEALALRKRAETEM 144

Query: 123 EDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPE 170
           E+G+FSQADL LS+AIELKPCGGIHIIFKDRSIVRLA GN++GALEDANEAL+VAP+Y E
Sbjct: 145 EEGDFSQADLHLSQAIELKPCGGIHIIFKDRSIVRLAQGNYSGALEDANEALKVAPQYTE 204

[Close]

BLAST of Carg04731 vs. TAIR 10
Match: AT3G17670.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-40
Identity = 93/214 (43.46%), Postives = 123/214 (57.48%), Query Frame = 0


Query: 14  QNQEIRVCTNRTCRRQGSFQTLETL----------------------------------- 73
           Q +EIRVCTNRTCRRQGSFQ LETL                                   
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 74  --------------------------SVSKSLEALALRKRAECEVEDGNFSQADLLLSKA 133
                                     +V+ +L ALAL   A  +++ GNFS+A+ LL++A
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 134 IELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHF 167
           +ELKP GG+H IFK RS+ +L + +++GALED ++AL +AP Y E YICQGDV+++   +
Sbjct: 137 LELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQY 196

[Close]

BLAST of Carg04731 vs. TAIR 10
Match: AT3G17670.2 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-40
Identity = 93/214 (43.46%), Postives = 123/214 (57.48%), Query Frame = 0


Query: 14  QNQEIRVCTNRTCRRQGSFQTLETL----------------------------------- 73
           Q +EIRVCTNRTCRRQGSFQ LETL                                   
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 74  --------------------------SVSKSLEALALRKRAECEVEDGNFSQADLLLSKA 133
                                     +V+ +L ALAL   A  +++ GNFS+A+ LL++A
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 134 IELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHF 167
           +ELKP GG+H IFK RS+ +L + +++GALED ++AL +AP Y E YICQGDV+++   +
Sbjct: 137 LELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQY 196

[Close]

BLAST of Carg04731 vs. TAIR 10
Match: AT1G12270.1 (stress-inducible protein, putative )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 50  RKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEAL 109
           + +       G+F+ A    ++AI L P    H++F +RS    +L  +A AL DA E +
Sbjct: 6   KAKGNAAFSSGDFTTAINHFTEAIALAPTN--HVLFSNRSAAHASLHQYAEALSDAKETI 65

Query: 110 RVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS 155
           ++ P +P+ Y   G   L ++ F+ A  +Y   L++DP+    KS
Sbjct: 66  KLKPYWPKGYSRLGAAHLGLNQFELAVTAYKKGLDVDPTNEALKS 108

[Close]

BLAST of Carg04731 vs. TAIR 10
Match: AT4G12400.1 (stress-inducible protein, putative )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 50  RKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEAL 109
           + +       G+++ A    ++AI L P    HI++ +RS    +L  +  AL DA + +
Sbjct: 6   KSKGNAAFSSGDYATAITHFTEAINLSPTN--HILYSNRSASYASLHRYEEALSDAKKTI 65

Query: 110 RVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS 155
            + P + + Y   G  F+ +  FD A  SY   LEIDPS    KS
Sbjct: 66  ELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDPSNEMLKS 108

[Close]

BLAST of Carg04731 vs. TAIR 10
Match: AT4G12400.2 (stress-inducible protein, putative )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 50  RKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEAL 109
           + +       G+++ A    ++AI L P    HI++ +RS    +L  +  AL DA + +
Sbjct: 6   KSKGNAAFSSGDYATAITHFTEAINLSPTN--HILYSNRSASYASLHRYEEALSDAKKTI 65

Query: 110 RVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKS 155
            + P + + Y   G  F+ +  FD A  SY   LEIDPS    KS
Sbjct: 66  ELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDPSNEMLKS 108

The following BLAST results are available for this feature:

BLAST of Carg04731 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020025.1	2.3e-87	100.00	Small glutamine-rich tetratricopeptide repeat-containing protein alpha, partial ...	[more]
XP_022923908.1	6.7e-79	74.35	small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1...	[more]
XP_023519354.1	1.9e-78	74.35	small glutamine-rich tetratricopeptide repeat-containing protein beta [Cucurbita...	[more]
KAG6584438.1	2.8e-77	73.80	Small glutamine-rich tetratricopeptide repeat-containing protein alpha, partial ...	[more]
XP_023001358.1	1.8e-76	72.17	uncharacterized protein LOC111495518 [Cucurbita maxima]	[more]

BLAST of Carg04731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32LM2	2.2e-08	33.60	Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos ta...	[more]
O43765	2.9e-08	33.86	Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo s...	[more]
Q8BJU0	4.9e-08	33.86	Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus mu...	[more]
O70593	4.9e-08	33.86	Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus...	[more]
Q9LNB6	6.4e-08	29.52	Hsp70-Hsp90 organizing protein 1 OS=Arabidopsis thaliana OX=3702 GN=HOP1 PE=2 SV...	[more]

BLAST of Carg04731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAV3	3.2e-79	74.35	small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1...	[more]
A0A6J1KQA5	8.8e-77	72.17	uncharacterized protein LOC111495518 OS=Cucurbita maxima OX=3661 GN=LOC111495518...	[more]
A0A0A0LQA2	2.3e-64	62.98	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031840 ...	[more]
A0A1S3AUF9	5.6e-63	62.98	tetratricopeptide repeat protein 1 OS=Cucumis melo OX=3656 GN=LOC103482942 PE=4 ...	[more]
A0A6J1C6P2	6.8e-61	62.50	sperm-associated antigen 1 OS=Momordica charantia OX=3673 GN=LOC111008751 PE=4 S...	[more]

BLAST of Carg04731 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17670.1	3.8e-40	43.46	tetratricopeptide repeat (TPR)-containing protein	[more]
AT3G17670.2	3.8e-40	43.46	tetratricopeptide repeat (TPR)-containing protein	[more]
AT1G12270.1	4.6e-09	29.52	stress-inducible protein, putative	[more]
AT4G12400.1	2.3e-08	30.48	stress-inducible protein, putative	[more]
AT4G12400.2	2.3e-08	30.48	stress-inducible protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	PANTHER	PTHR47682	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN	coord: 41..171 coord: 12..39
None	No IPR available	CDD	cd02980	TRX_Fd_family	coord: 18..63 e-value: 0.00639595 score: 32.2141
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 46..79 e-value: 190.0 score: 3.6 coord: 82..115 e-value: 23.0 score: 11.7 coord: 116..149 e-value: 0.0037 score: 26.5
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 116..149 score: 10.1484
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 39..172 e-value: 4.0E-19 score: 70.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 45..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04731-RA	Carg04731-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding