Carg04538 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04538
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein IQ-DOMAIN 1-like
Location	Carg_Chr04: 19888638 .. 19888871 (+)
RNA-Seq Expression	Carg04538
Synteny	Carg04538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAACCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG

mRNA sequence

ATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAACCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG

Coding sequence (CDS)

ATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAACCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG

Protein sequence

MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDATPIKNVAATERDFTGESR

Homology

[Close]

BLAST of Carg04538 vs. NCBI nr
Match: KAG6602332.1 (Protein IQ-DOMAIN 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 435 MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 494

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 495 PIKNVAATERDFTGESR 511

[Close]

BLAST of Carg04538 vs. NCBI nr
Match: KAG7033016.1 (hypothetical protein SDJN02_07068, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
          MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 1  MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60

Query: 61 PIKNVAATERDFTGESR 78
          PIKNVAATERDFTGESR
Sbjct: 61 PIKNVAATERDFTGESR 77

[Close]

BLAST of Carg04538 vs. NCBI nr
Match: XP_022921454.1 (protein IQ-DOMAIN 1-like [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 411 MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 470

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 471 PIKNVAATERDFTGESR 487

[Close]

BLAST of Carg04538 vs. NCBI nr
Match: XP_023513229.1 (protein IQ-DOMAIN 1-like [Cucurbita pepo subsp. pepo] >XP_023513234.1 protein IQ-DOMAIN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKE VSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 411 MASTEAARARSRLSSPMGIEKTTATPEKEAVSGGAKKRLSFTASTATVRRHSGPPKIDAT 470

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 471 PIKNVAATERDFTGESR 487

[Close]

BLAST of Carg04538 vs. NCBI nr
Match: XP_022990335.1 (protein IQ-DOMAIN 1-like [Cucurbita maxima] >XP_022990336.1 protein IQ-DOMAIN 1-like [Cucurbita maxima])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKE VSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 411 MASTEAARARSRLSSPMGIEKTTATPEKESVSGGAKKRLSFTASTATVRRHSGPPKIDAT 470

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 471 PIKNVAATERDFTGESR 487

[Close]

BLAST of Carg04538 vs. ExPASy Swiss-Prot
Match: Q9FT53 (Protein IQ-DOMAIN 3 OS=Arabidopsis thaliana OX=3702 GN=IQD3 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-05
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   MASTEAARARSRLS--SPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKID 60
           MA T+AA+AR+R S  SP+  EKT            AKKRLSF+ S  TVRR SGPPK++
Sbjct: 372 MAPTQAAKARARFSNLSPLSSEKT------------AKKRLSFSGSPKTVRRFSGPPKLE 424

Query: 61  ATPIK 64
           +   K
Sbjct: 432 SNVTK 424

[Close]

BLAST of Carg04538 vs. ExPASy TrEMBL
Match: A0A6J1E0I5 (protein IQ-DOMAIN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111429725 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.6e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 411 MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 470

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 471 PIKNVAATERDFTGESR 487

[Close]

BLAST of Carg04538 vs. ExPASy TrEMBL
Match: A0A6J1JPU1 (protein IQ-DOMAIN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111487231 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMGIEKTTATPEKE VSGGAKKRLSFTASTATVRRHSGPPKIDAT
Sbjct: 411 MASTEAARARSRLSSPMGIEKTTATPEKESVSGGAKKRLSFTASTATVRRHSGPPKIDAT 470

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVAATERDFTGESR
Sbjct: 471 PIKNVAATERDFTGESR 487

[Close]

BLAST of Carg04538 vs. ExPASy TrEMBL
Match: A0A6J1FFI1 (protein IQ-DOMAIN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444987 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMG E T ATP+K P SGG KKRLSF AS A  RRHSGPPK+D  
Sbjct: 405 MASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTN 464

Query: 61  PIKNVAATERDFTGESR 78
           PIKNVA  +RDFTGESR
Sbjct: 465 PIKNVA--DRDFTGESR 479

[Close]

BLAST of Carg04538 vs. ExPASy TrEMBL
Match: A0A6J1K263 (protein IQ-DOMAIN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489440 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 59/76 (77.63%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDAT 60
           MASTEAARARSRLSSPMG E T ATP+K P SGG KKRLSF AS A  RRHSGPPK+D  
Sbjct: 401 MASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTN 460

Query: 61  PIKNVAATERDFTGES 77
           PIKNVA  ERDFTGE+
Sbjct: 461 PIKNVA--ERDFTGEN 474

[Close]

BLAST of Carg04538 vs. ExPASy TrEMBL
Match: A0A6J1C0I9 (protein IQ-DOMAIN 1-like OS=Momordica charantia OX=3673 GN=LOC111006342 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.3e-18
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1   MASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTAS--TATVRRHSGPPKID 60
           MASTEAARARSRLSSPMG EKT  TPEK   +GGAKKRLS+ AS  TAT RRHSGPPKID
Sbjct: 411 MASTEAARARSRLSSPMGTEKTAVTPEKGS-AGGAKKRLSYPASPATATARRHSGPPKID 470

Query: 61  ATPIKNVAATERDFTGESR 78
           A+PIK V    +D+TGESR
Sbjct: 471 ASPIKKVEG--KDYTGESR 486

[Close]

BLAST of Carg04538 vs. TAIR 10
Match: AT3G52290.1 (IQ-domain 3 )

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   MASTEAARARSRLS--SPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKID 60
           MA T+AA+AR+R S  SP+  EKT            AKKRLSF+ S  TVRR SGPPK++
Sbjct: 372 MAPTQAAKARARFSNLSPLSSEKT------------AKKRLSFSGSPKTVRRFSGPPKLE 424

Query: 61  ATPIK 64
           +   K
Sbjct: 432 SNVTK 424

The following BLAST results are available for this feature:

BLAST of Carg04538 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602332.1	1.4e-31	100.00	Protein IQ-DOMAIN 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033016.1	1.4e-31	100.00	hypothetical protein SDJN02_07068, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022921454.1	1.4e-31	100.00	protein IQ-DOMAIN 1-like [Cucurbita moschata]	[more]
XP_023513229.1	1.2e-30	98.70	protein IQ-DOMAIN 1-like [Cucurbita pepo subsp. pepo] >XP_023513234.1 protein IQ...	[more]
XP_022990335.1	1.2e-30	98.70	protein IQ-DOMAIN 1-like [Cucurbita maxima] >XP_022990336.1 protein IQ-DOMAIN 1-...	[more]

BLAST of Carg04538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FT53	5.1e-05	49.23	Protein IQ-DOMAIN 3 OS=Arabidopsis thaliana OX=3702 GN=IQD3 PE=1 SV=1	[more]

BLAST of Carg04538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0I5	6.6e-32	100.00	protein IQ-DOMAIN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111429725 PE=4 SV=1	[more]
A0A6J1JPU1	5.6e-31	98.70	protein IQ-DOMAIN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111487231 PE=4 SV=1	[more]
A0A6J1FFI1	1.8e-21	77.92	protein IQ-DOMAIN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444987 PE=4 SV=1	[more]
A0A6J1K263	6.9e-21	77.63	protein IQ-DOMAIN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489440 PE=4 SV=1	[more]
A0A6J1C0I9	9.3e-18	74.68	protein IQ-DOMAIN 1-like OS=Momordica charantia OX=3673 GN=LOC111006342 PE=4 SV=...	[more]

BLAST of Carg04538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52290.1	3.6e-06	49.23	IQ-domain 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04538-RA	Carg04538-RA	mRNA