Carg04526 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04526
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L35-like
Location	Carg_Chr04: 19980709 .. 19981968 (+)
RNA-Seq Expression	Carg04526
Synteny	Carg04526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCAACACGGTAGCAGCTCTTTTCACCCGGTTCCATCTTCTCTTCCTAGGGTTTCGCCGCGGGCGGCGCAGAGTCGAAGAGGACGCTAGAAGAAATGGGTTAGTTCGAAAGAAATCTTATCATTATTGAAATTAGACGTTCTCGATTCAGATTCTGGCTCTCTTGTTTCTCGAGGAAAACGATGGAGTTTATGTTGTTGAATTTGATGTTTTTTGGTTTGTAGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCACCAAACAAGCTATCCAAAATGTGATTTCCTTTTCCTCGAGTCTGTTTTTAGGTTTTTTCCGCAATGCATATCATTGTGTTGTTGAATTTGTTGTTCTTTGTGGTTGATTTTGAAGCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGTAACTCTTCGTCTTTATCCTGTTTCCTTCCTTTCCTTCACTCTTTTTGGCTCCAAGTATGGATTATGTTCATGTGCAATCTCCATTACAAAAAATAGTGCCAAACTAGTTGTTGGCGATTTGATTTTTCAAGGTAGATTTGGATGAGGAATAGTAAATCATAATTGAATTTGGCTTTGGATGCAAATGCTGGCGAACATATCCATGATAGCGAATGGCTTCGTTAGTTTTACAACCTTGATTCCTGTTCTAATCACTTTCAGTGCTGTTAGCTGGTTGGTAGTCCATTTCTTTCGACCATATTGTTGAGTGAAACCAAATTCTCATGCAGGCATCTCTGGTAACCGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAGTATTGTCTTGTGTTTTTGTGGACAAGTTTTGTCTCGTGTTCTTGATAATCTTATGTCTGACACTCTTTAATCTTTCCCCCCAAAACCGAAATGTTTGATTTTCATAGACAATTCTATATTTTTACTGATAGCGTAAGTTCAATTTCTGCTATTCCTTTCTTGAACAATCTTTAGCTTTCTTTTATCGGCTTGTTTGATTGCTTCAGTTTCCTTGTCTGAAAGGAAGATTGTTTATATAG

mRNA sequence

AGTCAACACGGTAGCAGCTCTTTTCACCCGGTTCCATCTTCTCTTCCTAGGGTTTCGCCGCGGGCGGCGCAGAGTCGAAGAGGACGCTAGAAGAAATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCACCAAACAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACCGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAGTATTGTCTTGTGTTTTTGTGGACAAGTTTTGTCTCGTGTTCTTGATAATCTTATGTCTGACACTCTTTAATCTTTCCCCCCAAAACCGAAATGTTTGATTTTCATAGACAATTCTATATTTTTACTGATAGCGTAAGTTCAATTTCTGCTATTCCTTTCTTGAACAATCTTTAGCTTTCTTTTATCGGCTTGTTTGATTGCTTCAGTTTCCTTGTCTGAAAGGAAGATTGTTTATATAG

Coding sequence (CDS)

ATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCACCAAACAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACCGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Carg04526 vs. NCBI nr
Match: KAG6602348.1 (Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 331 MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 390

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA
Sbjct: 391 ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 450

Query: 121 IKV 124
           IKV
Sbjct: 451 IKV 453

[Close]

BLAST of Carg04526 vs. NCBI nr
Match: XP_022923169.1 (60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. NCBI nr
Match: XP_022990488.1 (60S ribosomal protein L35-like [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. NCBI nr
Match: XP_023525260.1 (60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. NCBI nr
Match: XP_022941613.1 (60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo] >KAG6600078.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030747.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-50
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-49
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.1e-49
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy TrEMBL
Match: A0A6J1E5L3 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy TrEMBL
Match: A0A6J1JTF2 (60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.9e-53
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy TrEMBL
Match: A0A6J1FSL2 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.4e-53
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy TrEMBL
Match: A0A6J1JVN4 (60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. ExPASy TrEMBL
Match: A0A6J1FH81 (60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 197.2 bits (500), Expect = 7.7e-51
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-50
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-50
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg04526 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Carg04526 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602348.1	2.6e-53	100.00	Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022923169.1	2.6e-53	100.00	60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal ...	[more]
XP_022990488.1	1.0e-52	99.19	60S ribosomal protein L35-like [Cucurbita maxima]	[more]
XP_023525260.1	1.3e-52	99.19	60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941613.1	1.3e-52	98.37	60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosoma...	[more]

BLAST of Carg04526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	1.7e-50	90.24	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	1.1e-49	89.43	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	2.4e-49	88.62	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	4.1e-49	88.62	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	1.2e-48	87.80	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Carg04526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5L3	1.3e-53	100.00	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=...	[more]
A0A6J1JTF2	4.9e-53	99.19	60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 ...	[more]
A0A6J1FSL2	6.4e-53	98.37	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=...	[more]
A0A6J1JVN4	1.4e-52	98.37	60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1	[more]
A0A6J1FH81	1.4e-52	98.37	60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=...	[more]

BLAST of Carg04526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	7.7e-51	89.43	Ribosomal L29 family protein	[more]
AT3G09500.1	1.7e-50	88.62	Ribosomal L29 family protein	[more]
AT5G02610.1	2.9e-50	88.62	Ribosomal L29 family protein	[more]
AT3G55170.1	8.5e-50	87.80	Ribosomal L29 family protein	[more]
AT3G55170.2	8.5e-50	87.80	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 1.6E-22 score: 81.4
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 2.21859E-11 score: 52.8751
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 5.7E-36 score: 124.7
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 7.1E-18 score: 62.4
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 1.2E-17 score: 63.6
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.8168
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04526-RA	Carg04526-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome