Carg04494 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04494
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 20177116 .. 20177685 (-)
RNA-Seq Expression	Carg04494
Synteny	Carg04494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAGTGATTACAAGTTCATTTATTGTCCCTAGCGTCTAGGAACAGAACACTGGATGATTTCTTTGGTGCATAATTGTAAGAACGATTTGAATAGAGTTTTATCTAATGTGGAAATGCTTTGAACACAATGGGTAAGAGATGATCATTTGTTTGACATAACAGAAATGAAGATTACATATGGCTGTTAAGCCTTTCCTGAGAGAATGAATAGCAAATTCCCCTCACTTGCATCTGCATACTACTTAGATTAGATGGGCAGCAAGTAACGAAACTCGGATTCATAAGGTTGAATTTCCACCATTTTATGGATGGGAGATTTAGTTTCGCCGTTTAAACACTCCATTATCGTCCTCTTCAAGCTTGCAGAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTG

mRNA sequence

ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTG

Coding sequence (CDS)

ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTG

Protein sequence

METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLPSPTRSPLPL

Homology

[Close]

BLAST of Carg04494 vs. NCBI nr
Match: KAG7033059.1 (hypothetical protein SDJN02_07112, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP 60
          METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP
Sbjct: 1  METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP 60

Query: 61 SPTRSPLPL 70
          SPTRSPLPL
Sbjct: 61 SPTRSPLPL 69

The following BLAST results are available for this feature:

BLAST of Carg04494 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033059.1	3.3e-29	100.00	hypothetical protein SDJN02_07112, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04494 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04494 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04494 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04494-RA	Carg04494-RA	mRNA