Carg04418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04418
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA ligase/cyclic nucleotide phosphodiesterase
Location	Carg_Chr04: 20483817 .. 20484368 (+)
RNA-Seq Expression	Carg04418
Synteny	Carg04418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

mRNA sequence

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Coding sequence (CDS)

ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Protein sequence

MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

Homology

[Close]

BLAST of Carg04418 vs. NCBI nr
Match: XP_022964210.1 (uncharacterized protein LOC111464296 [Cucurbita moschata] >KAG6602451.1 hypothetical protein SDJN03_07684, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033135.1 hypothetical protein SDJN02_07188, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.8e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY
Sbjct: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           LEA
Sbjct: 181 LEA 183

[Close]

BLAST of Carg04418 vs. NCBI nr
Match: XP_022989855.1 (uncharacterized protein LOC111486920 [Cucurbita maxima] >XP_023553101.1 uncharacterized protein LOC111810600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY
Sbjct: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           LEA
Sbjct: 181 LEA 183

[Close]

BLAST of Carg04418 vs. NCBI nr
Match: XP_004142350.1 (uncharacterized protein LOC101208638 [Cucumis sativus] >XP_008458738.1 PREDICTED: uncharacterized protein LOC103498055 [Cucumis melo] >KAA0037479.1 RNA ligase/cyclic nucleotide phosphodiesterase [Cucumis melo var. makuwa] >KGN52392.1 hypothetical protein Csa_007965 [Cucumis sativus] >TYK01955.1 RNA ligase/cyclic nucleotide phosphodiesterase [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. NCBI nr
Match: XP_022993671.1 (uncharacterized protein LOC111489594 [Cucurbita maxima] >XP_023551692.1 uncharacterized protein LOC111809459 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSL+SIGSLP+DNN+LFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. NCBI nr
Match: XP_038890563.1 (uncharacterized protein LOC120080080 [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 176/183 (96.17%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSL+SIGSLP+D+NILFLGPAPSISLLQFQSQLC+AMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDSNILFLGPAPSISLLQFQSQLCDAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. ExPASy TrEMBL
Match: A0A6J1HK74 (uncharacterized protein LOC111464296 OS=Cucurbita moschata OX=3662 GN=LOC111464296 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.8e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY
Sbjct: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           LEA
Sbjct: 181 LEA 183

[Close]

BLAST of Carg04418 vs. ExPASy TrEMBL
Match: A0A6J1JNI6 (uncharacterized protein LOC111486920 OS=Cucurbita maxima OX=3661 GN=LOC111486920 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY
Sbjct: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           LEA
Sbjct: 181 LEA 183

[Close]

BLAST of Carg04418 vs. ExPASy TrEMBL
Match: A0A5A7T7Y4 (RNA ligase/cyclic nucleotide phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00470 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. ExPASy TrEMBL
Match: A0A6J1JWZ6 (uncharacterized protein LOC111489594 OS=Cucurbita maxima OX=3661 GN=LOC111489594 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPLPLSL+SIGSLP+DNN+LFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. ExPASy TrEMBL
Match: A0A0A0KVB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630940 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]

BLAST of Carg04418 vs. TAIR 10
Match: AT5G40190.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-74
Identity = 128/183 (69.95%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES+
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +KNF SKQEP+ +S ++IGS  +DNN+LFL P PS+SLLQ Q+QLC+ ++KE ++ GEEY
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LEA 184
           LE+
Sbjct: 181 LES 183

[Close]

BLAST of Carg04418 vs. TAIR 10
Match: AT3G28140.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-69
Identity = 128/184 (69.57%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEE 120
           I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+Q Q QLCE ++KEG E GEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN 180
           YR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLEA 184
            LE+
Sbjct: 181 NLES 184

[Close]

BLAST of Carg04418 vs. TAIR 10
Match: AT3G28140.2 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 99/153 (64.71%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEE 120
           I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+Q Q QLCE ++KEG E GEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL 153
           YR+ SW+P C+VA +VPK+R++E F V     L
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVTSTFSL 153

The following BLAST results are available for this feature:

BLAST of Carg04418 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964210.1	5.8e-97	100.00	uncharacterized protein LOC111464296 [Cucurbita moschata] >KAG6602451.1 hypothet...	[more]
XP_022989855.1	1.3e-96	99.45	uncharacterized protein LOC111486920 [Cucurbita maxima] >XP_023553101.1 uncharac...	[more]
XP_004142350.1	1.0e-93	96.72	uncharacterized protein LOC101208638 [Cucumis sativus] >XP_008458738.1 PREDICTED...	[more]
XP_022993671.1	1.0e-93	96.17	uncharacterized protein LOC111489594 [Cucurbita maxima] >XP_023551692.1 uncharac...	[more]
XP_038890563.1	1.0e-93	96.17	uncharacterized protein LOC120080080 [Benincasa hispida]	[more]

BLAST of Carg04418 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HK74	2.8e-97	100.00	uncharacterized protein LOC111464296 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]
A0A6J1JNI6	6.3e-97	99.45	uncharacterized protein LOC111486920 OS=Cucurbita maxima OX=3661 GN=LOC111486920...	[more]
A0A5A7T7Y4	5.0e-94	96.72	RNA ligase/cyclic nucleotide phosphodiesterase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1JWZ6	5.0e-94	96.17	uncharacterized protein LOC111489594 OS=Cucurbita maxima OX=3661 GN=LOC111489594...	[more]
A0A0A0KVB2	5.0e-94	96.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630940 PE=4 SV=1	[more]

BLAST of Carg04418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40190.1	1.1e-74	69.95	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.1	1.4e-69	69.57	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT3G28140.2	1.2e-52	64.71	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 5..178 e-value: 1.8E-16 score: 62.3
None	No IPR available	PFAM	PF13563	2_5_RNA_ligase2	coord: 41..155 e-value: 5.7E-12 score: 45.8
None	No IPR available	PANTHER	PTHR36039	FAMILY NOT NAMED	coord: 1..182
IPR009097	Cyclic phosphodiesterase	SUPERFAMILY	55144	LigT-like	coord: 5..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04418-RA	Carg04418-RA	mRNA