Carg04330 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04330
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	leucine-rich repeat extensin-like protein 3
Location	Carg_Chr01: 140238 .. 144384 (-)
RNA-Seq Expression	Carg04330
Synteny	Carg04330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGCTCATTCTCTACGTTGATCTTCGTCATTTCGGGGTTTGCTTTCAGTATTTTATCGCTTCTTGTTGAGTCTCAGGCTCGAGATGGAGCCATTCCCTCTTCCTCGCCGCCTCCGCCTCCTCCATCTCCACCACCTCCATCTCCGCCACCGCCACCACCACCGCCACCACCGCTATCACCACCGCAATCACCACCGCTATCACCACCGCCCCCGTCCCCGTCCCCGAACTCCGTCCCGCCTCCACCCCCAAACTTCGTCCCGCCTCCACCGCCTGCATCTTCATCTCCACCTCCGCCAATATTTCCCCCACCGCCTTCTCTGCCGAGTCTCCAGCATCGTTCTACTCCGCCGCCGCCGCCTATTCCTGCATCCTCCGACGCGAATAAAAAACCACCCGAAGTGAGTCGGAATAACAACTCCCACAATATTGAAGGGTCGAAGAGAAGTCTCAATATGGGGAAGAAAGTAGGGCTATTCTTTGTTGGTATTGCGGCAGTACTTCAAATCTGCGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTCCTAATATTCAAGGGGTACGATGGTTTTTCTTGAATCAATTGGCAACCGTTTCCTTCGTCTTACATCAGAGGCAAGGACTTTAGGAGTATGGTTGAGGATATCACGGCCATCGAGCTAACTGAATTGAATCACTGCTAAAAAAAAAAAAAAAAAAAGGCAACAATTAGGTAAATTTTCTTGACTTTGGGGTTGGGAAGATGCACAAAACATGTTCTTGAGATGCTGCAGAAAAGAAAATGAAACAGAGGAGGCAGCAGGCGGATAATGAGGGGCAAGCATCTTCTCTTAGGGTCTCCTCAGGCGTTGTGTAAAAATGGGTACATGATATGATGATTGGTTGAGTTTTTTCTTCTTGTGATTTTTGAATTCTTGTTCATTCTTTTGTCCAATGCTGATTATACAGTTTGTTAATTCAGAAGAAACCGCTTGATATACATACCTGTTGTTGAATTCTTTTTCTGCTAACCACTGTTCCTTATGGCTGTAAAAGATTGTGTTTGTTTAATATCACAAACTAATTATACACTCACCCTCTACTTTTTCCTTGCTTGAGCGTGTAATGTTGATTGTAGTGTAACAGTTTTGTTTATCACTGATACTGCTGATTTTGGTGAAAAGGGTGTTTGCGAATCTATTACGAGATGCAATTCCCGACTATCTAGTTATTGATTATCTATAAGCTCTACGGGTTTAGAATCAGCGAACTGCCTTAGATCTGAACAGTAGTTGGGTTCATTCTAGACCTATGTTAACGCATCAGGGAGACCATTGAATTTTTTTCTACATATGCTTCCATGCAAAAACTCTGTAGGATAGGACAGAATTATTTTCTCTGAAGTCTTTGATTTGATTAGATTACTCTTAAGAAAGAAAAAAGATTGATTTCGTTGCACCTTATTCTAGTATGGTTCTAGTCTTGAGCTCGAGTCAGGCAGAGACCCTCATTTTTTCGGTTTCGATATTCAAGGAGTGTTGGAGCTAGCTTGTGTGCATCATCGTGTTTTGATATTCAAGAGATTGGGTTAAGAGTTGAAGAGGAGGTGGTTAGGTTTAATGTTTCCTTGTGGGTGTGGCTTGCCAGGCCTTTTTGTAGTTAATGTCTTGGTCTTGGTCTTGGTCTTGTTCTTTATTATTGGAGTCATTTCGTGTAGGTCTTTTTTTGTCCCCTTGGAGCACTTACTGTGTTAAGATAGAGGCGTTTGAAAATGGTTAGTTATTAGTGTTTTAACATCAAGGTTAAATTGAAGACTGCTAAGGTCTGAATGCCTTATCTCTTGACATTATTTTAGCCAACTCCCTCTTCTATGATTATTCTGCACAAATTTTAACCCATTAACTTCAGTTATGATTCTGAGCAGGGAAGCTCATTTCTGGTCAGTTTCTTAAGGTCTGTTTGGTTTGGCCTTCAAAAATCTTATCAACTCAACGTCTTAACTAAATAGTTCAAAAGCTTATTGAAATGTCATCATTTTTGCACTTTTTTTGTTTTTTTTGTTTTGCATCTTCGAACGTCAAAAGTTCATGAGATCTGAGGTATACAAATGGTTACTTGATGTGTTTGAATTCTTACTCTTGTTGAACAACAAAAAGACAATAAAGAGGATGCATGCTCATCGTTCCTGCACCAATGACATTATGACAAATAGTTTTGACTTTTTCAAGGAATATGTGGTTGTTTGTGAGTTGTATTGAACAACACTTTCCTATATCTCTTTTCTCATCTATTTTAAAGAGATTCGTGGGGGATGACTTGTAAAGTTCAATGTCACTGTGCACTTGTGACAAGCTTATGGTTACAATAGAATCGAGAACACTCATTCTAAACAATCAGTTCATCATACCCAACTGAAAAAAGGAGAAAAAGAAAATAACTCATTTTTTTCTTCTGCATATATTGTTTGTCCTGATCTGCTTAGAAACATGGATTCCTTTTTCGATTTTAACAACACTTGGATGGGAGAGATTTGAGGTTTTGACTTCTTGAGCTAAGTTGTTTGAGTAGCTAGTATTAACGAACTATCTATACATTTAGACAAGTTAATGGAATATTATAATTTACATTAGAAATCATTAGATGGGTGAAAGCCGATATGATAGCAAAATGATAGAATTGAAGATTTGCCTGGCCAGCCTTAAAATAGAAAATTTTTGGGAGTGTAGGAGCTGCAAATTTCAAATTAAAGGGAGAGAAGAGATAAGGAGGGGTGTATTGGAGGTTGGACAGAGCTGAAAAATGCAGAAGGAACTGTCAATCCTTCTGCAATCAACAGTGAAGCTGCAAGATCCTTTTCCACGCACCTTCTCCCTCCTAAACACATCCTCATTCGACTCTCATCTCTTGTATTCTACAGAGTTTGGGCAACTCTCAATCATTTTTTTTTATTTTTCAAACTCTATACTCTCCCCGTTGTTTCATGAAAGATGCGGTTGGAATTTACCCATCCAAGCTGAGAATGTGAGGAACTGAATCTGTGAAATTGATTGATACCCTGAAACAGAAAAGAAAACCACCAGCATCAATAGTGTTACCTTTTGGCTGCAGGTGAAGCTTGGATGGATTCATTCAAGTAATGTCCAATCCAAACATGTACTGTGTGTTGCCTTTCTCTGTCCCTTTGACGACTCGTACTCTGTTTTACCTCAGATATCAGTGAATCTTGAACTAATTTTTGTTCTTTAGAATGGGCTTTGAATTCTTGGCCATAGTGTTCTTTGATTCTATCATTGGAAAACAACGGCTAATCTTTATGTTTTGATGTGGGTTCAGGACTGCTTAAAGCCTTTTTTGGACTTTTATTATAGAACAACTTTAATGATTCATAAACGTAGAGATTGAAATCATTAGTTATACCAACCAAAAGCATGTCATGCTCAGCTGAGAGTTAAATATCAAGTTTTTGCTTAATTAAGTACGATAGGCTGTTATTCAGAGTACTCTCTAAACAGCCTATTAGTCAAGACAAGGAAAGCAAATTTTCTGTTTGTTTAGGGAGAAAATTGTCATGGTGCTTCCATTCAAACAAGCAAGTTCGCATACTTTGAAACATGTTTCTTACAGAAAGAGACAGCAAGTGGAAAAAAGAAATATCGAAGAAAAGCAAAGGACAGAAAATCTCTCTTGAGAATCCTGCAGTTTTACATTCAAAACTTCAGCAAAAGAAAAGCTTCCCTGACCGCAAACTAAGAAGAAAAGCAGGCACTTCACTCACTAACAAGTACTCTTTTGGCCATAACCCCAAAACTCCTTATTTGGCACTTTAACCATCTGCACAGAGAGACAGAGAAAGAGAAGAGAGAGAGGGAGGGAGGTGAAGTGAGAAGGATACTATCAGATTACGGCACAAGAAGCAAGCAGAGCAGCAAAAGTACTCATAACCCAATAAAATTTCCACTTTGTATACTTGAATTTGTGGCTAAATCAAGCCAGGAATCTGAGTTTTTTGGTGGGCAATCCTCAAAGAAGTGGAGTAGTGGCTTCTGGGTTTCTGCATCATCTTCTTCCTCTGTTTTAGCTGATCTTGTTGATTTATTAAAATCTGTGCCCAAAACAAAGCAGTGTTGCTCTTGTTGTTGCCTCGCCTGTTTCGAACTGTAA

mRNA sequence

ATGGAACGCTCATTCTCTACGTTGATCTTCGTCATTTCGGGGTTTGCTTTCAGTATTTTATCGCTTCTTGTTGAGTCTCAGGCTCGAGATGGAGCCATTCCCTCTTCCTCGCCGCCTCCGCCTCCTCCATCTCCACCACCTCCATCTCCGCCACCGCCACCACCACCGCCACCACCGCTATCACCACCGCAATCACCACCGCTATCACCACCGCCCCCGTCCCCGTCCCCGAACTCCGTCCCGCCTCCACCCCCAAACTTCGTCCCGCCTCCACCGCCTGCATCTTCATCTCCACCTCCGCCAATATTTCCCCCACCGCCTTCTCTGCCGAGTCTCCAGCATCGTTCTACTCCGCCGCCGCCGCCTATTCCTGCATCCTCCGACGCGAATAAAAAACCACCCGAAGTGAGTCGGAATAACAACTCCCACAATATTGAAGGGTCGAAGAGAAGTCTCAATATGGGGAAGAAAGTAGGGCTATTCTTTGTTGGTATTGCGGCAGTACTTCAAATCTGCGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTCCTAATATTCAAGGGGTACGATGAAAAGAAAATGAAACAGAGGAGGCAGCAGGCGGATAATGAGGGGCAAGCATCTTCTCTTAGGGTCTCCTCAGGCGTTGTGAGTGTTGGAGCTAGCTTGTGTGCATCATCGTGTTTTGATATTCAAGAGATTGGGTTAAGAGTTGAAGAGGAGGTGGTGAAGCTTGGATGGATTCATTCAAAAAGAGACAGCAAGTGGAAAAAAGAAATATCGAAGAAAAGCAAAGGACAGAAAATCTCTCTTGAGAATCCTGCAGTTTTACATTCAAAACTTCAGCAAAAGAAAAGCTTCCCTGACCGCAAACTAAGAAGAAAAGCAGGCACTTCACTCACTAACAAAGAGACAGAGAAAGAGAAGAGAGAGAGGGAGGGAGGTGAAGTGAGAAGGATACTATCAGATTACGGCACAAGAAGCAAGCAGAGCAGCAAAAGTACTCATAACCCAATAAAATTTCCACTTTGTATACTTGAATTTGTGGCTAAATCAAGCCAGGAATCTGAGTTTTTTGGTGGGCAATCCTCAAAGAAGTGGAGTAGTGGCTTCTGGGTTTCTGCATCATCTTCTTCCTCTGTTTTAGCTGATCTTGTTGATTTATTAAAATCTGTGCCCAAAACAAAGCAGTGTTGCTCTTGTTGTTGCCTCGCCTGTTTCGAACTGTAA

Coding sequence (CDS)

ATGGAACGCTCATTCTCTACGTTGATCTTCGTCATTTCGGGGTTTGCTTTCAGTATTTTATCGCTTCTTGTTGAGTCTCAGGCTCGAGATGGAGCCATTCCCTCTTCCTCGCCGCCTCCGCCTCCTCCATCTCCACCACCTCCATCTCCGCCACCGCCACCACCACCGCCACCACCGCTATCACCACCGCAATCACCACCGCTATCACCACCGCCCCCGTCCCCGTCCCCGAACTCCGTCCCGCCTCCACCCCCAAACTTCGTCCCGCCTCCACCGCCTGCATCTTCATCTCCACCTCCGCCAATATTTCCCCCACCGCCTTCTCTGCCGAGTCTCCAGCATCGTTCTACTCCGCCGCCGCCGCCTATTCCTGCATCCTCCGACGCGAATAAAAAACCACCCGAAGTGAGTCGGAATAACAACTCCCACAATATTGAAGGGTCGAAGAGAAGTCTCAATATGGGGAAGAAAGTAGGGCTATTCTTTGTTGGTATTGCGGCAGTACTTCAAATCTGCGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTCCTAATATTCAAGGGGTACGATGAAAAGAAAATGAAACAGAGGAGGCAGCAGGCGGATAATGAGGGGCAAGCATCTTCTCTTAGGGTCTCCTCAGGCGTTGTGAGTGTTGGAGCTAGCTTGTGTGCATCATCGTGTTTTGATATTCAAGAGATTGGGTTAAGAGTTGAAGAGGAGGTGGTGAAGCTTGGATGGATTCATTCAAAAAGAGACAGCAAGTGGAAAAAAGAAATATCGAAGAAAAGCAAAGGACAGAAAATCTCTCTTGAGAATCCTGCAGTTTTACATTCAAAACTTCAGCAAAAGAAAAGCTTCCCTGACCGCAAACTAAGAAGAAAAGCAGGCACTTCACTCACTAACAAAGAGACAGAGAAAGAGAAGAGAGAGAGGGAGGGAGGTGAAGTGAGAAGGATACTATCAGATTACGGCACAAGAAGCAAGCAGAGCAGCAAAAGTACTCATAACCCAATAAAATTTCCACTTTGTATACTTGAATTTGTGGCTAAATCAAGCCAGGAATCTGAGTTTTTTGGTGGGCAATCCTCAAAGAAGTGGAGTAGTGGCTTCTGGGTTTCTGCATCATCTTCTTCCTCTGTTTTAGCTGATCTTGTTGATTTATTAAAATCTGTGCCCAAAACAAAGCAGTGTTGCTCTTGTTGTTGCCTCGCCTGTTTCGAACTGTAA

Protein sequence

MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLIFKGYDEKKMKQRRQQADNEGQASSLRVSSGVVSVGASLCASSCFDIQEIGLRVEEEVVKLGWIHSKRDSKWKKEISKKSKGQKISLENPAVLHSKLQQKKSFPDRKLRRKAGTSLTNKETEKEKREREGGEVRRILSDYGTRSKQSSKSTHNPIKFPLCILEFVAKSSQESEFFGGQSSKKWSSGFWVSASSSSSVLADLVDLLKSVPKTKQCCSCCCLACFEL

Homology

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BLAST of Carg04330 vs. NCBI nr
Match: KAG7036411.1 (hypothetical protein SDJN02_00028, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 715.7 bits (1846), Expect = 2.3e-202
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL
Sbjct: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60

Query: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120
           SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP
Sbjct: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120

Query: 121 PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFK 180
           PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFK
Sbjct: 121 PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFK 180

Query: 181 RRQLLIFKGYDEKKMKQRRQQADNEGQASSLRVSSGVVSVGASLCASSCFDIQEIGLRVE 240
           RRQLLIFKGYDEKKMKQRRQQADNEGQASSLRVSSGVVSVGASLCASSCFDIQEIGLRVE
Sbjct: 181 RRQLLIFKGYDEKKMKQRRQQADNEGQASSLRVSSGVVSVGASLCASSCFDIQEIGLRVE 240

Query: 241 EEVVKLGWIHSKRDSKWKKEISKKSKGQKISLENPAVLHSKLQQKKSFPDRKLRRKAGTS 300
           EEVVKLGWIHSKRDSKWKKEISKKSKGQKISLENPAVLHSKLQQKKSFPDRKLRRKAGTS
Sbjct: 241 EEVVKLGWIHSKRDSKWKKEISKKSKGQKISLENPAVLHSKLQQKKSFPDRKLRRKAGTS 300

Query: 301 LTNKETEKEKREREGGEVRRILSDYGTRSKQSSKSTHNPIKFPLCILEFVAKSSQESEFF 360
           LTNKETEKEKREREGGEVRRILSDYGTRSKQSSKSTHNPIKFPLCILEFVAKSSQESEFF
Sbjct: 301 LTNKETEKEKREREGGEVRRILSDYGTRSKQSSKSTHNPIKFPLCILEFVAKSSQESEFF 360

Query: 361 GGQSSKKWSSGFWVSASSSSSVLADLVDLLKSVPKTKQCCSCCCLACFEL 411
           GGQSSKKWSSGFWVSASSSSSVLADLVDLLKSVPKTKQCCSCCCLACFEL
Sbjct: 361 GGQSSKKWSSGFWVSASSSSSVLADLVDLLKSVPKTKQCCSCCCLACFEL 410

[Close]

BLAST of Carg04330 vs. NCBI nr
Match: KAG6606691.1 (hypothetical protein SDJN03_00033, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-73
Identity = 187/192 (97.40%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL
Sbjct: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60

Query: 61  ----SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRS 120
               SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRS
Sbjct: 61  SPPQSPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRS 120

Query: 121 TPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGF 180
           TPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGF
Sbjct: 121 TPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGF 180

Query: 181 LVFKRRQLLIFK 189
           LVFKRRQLL FK
Sbjct: 181 LVFKRRQLLRFK 192

[Close]

BLAST of Carg04330 vs. NCBI nr
Match: XP_023523257.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-67
Identity = 177/189 (93.65%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           MER FSTLIFVISGFAFSILSLLVESQARDGAI SSSPPPPPPSPPPPSPPPPPPPPPPL
Sbjct: 1   MERPFSTLIFVISGFAFSILSLLVESQARDGAISSSSPPPPPPSPPPPSPPPPPPPPPPL 60

Query: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120
           SPPQS      PP PSPN VPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP
Sbjct: 61  SPPQS------PPPPSPNFVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120

Query: 121 -PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVF 180
            PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVF
Sbjct: 121 SPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVF 180

Query: 181 KRRQLLIFK 189
           KRRQLL FK
Sbjct: 181 KRRQLLRFK 183

[Close]

BLAST of Carg04330 vs. NCBI nr
Match: XP_022948467.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 1.0e-64
Identity = 174/190 (91.58%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSS--PPPPPPSPPPPSPPPPPPPPP 60
           MER FSTLIFVISGFAFSILSLLVESQARDGAIPSSS  PPPPPPSPPPPSPPPPPPPPP
Sbjct: 1   MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPP 60

Query: 61  PLSPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP 120
           PLSPPQ    SPPPPSPS        PNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP
Sbjct: 61  PLSPPQ----SPPPPSPS--------PNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP 120

Query: 121 PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV 180
           PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV
Sbjct: 121 PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV 178

Query: 181 FKRRQLLIFK 189
           FKRRQLL FK
Sbjct: 181 FKRRQLLRFK 178

[Close]

BLAST of Carg04330 vs. NCBI nr
Match: XP_022998566.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 243.4 bits (620), Expect = 3.3e-60
Identity = 173/195 (88.72%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPP---- 60
           MER  ST IFVISGFAFSILSLLVESQARDGAI SSSPPPPPPSPPPPSPPPPPPP    
Sbjct: 1   MERPLSTFIFVISGFAFSILSLLVESQARDGAISSSSPPPPPPSPPPPSPPPPPPPLSPP 60

Query: 61  -PPPLSPPQSPPLSPP--PPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQ 120
             PPLSPPQSPP SPP  PP PSPN V PPPP FVPPPPPAS S PPPIFPPPPS PSLQ
Sbjct: 61  QSPPLSPPQSPPQSPPLSPPPPSPNFV-PPPPIFVPPPPPASPSSPPPIFPPPPSPPSLQ 120

Query: 121 HRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV 180
           HRSTP PPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV
Sbjct: 121 HRSTPLPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV 180

Query: 181 VGFLVFKRRQLLIFK 189
           VGFLVFKRRQLL FK
Sbjct: 181 VGFLVFKRRQLLRFK 194

[Close]

BLAST of Carg04330 vs. ExPASy TrEMBL
Match: A0A6J1G9A4 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111452141 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.9e-65
Identity = 174/190 (91.58%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSS--PPPPPPSPPPPSPPPPPPPPP 60
           MER FSTLIFVISGFAFSILSLLVESQARDGAIPSSS  PPPPPPSPPPPSPPPPPPPPP
Sbjct: 1   MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPPPSPPPPSPPPPPPPPP 60

Query: 61  PLSPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP 120
           PLSPPQ    SPPPPSPS        PNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP
Sbjct: 61  PLSPPQ----SPPPPSPS--------PNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTP 120

Query: 121 PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV 180
           PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV
Sbjct: 121 PPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLV 178

Query: 181 FKRRQLLIFK 189
           FKRRQLL FK
Sbjct: 181 FKRRQLLRFK 178

[Close]

BLAST of Carg04330 vs. ExPASy TrEMBL
Match: A0A6J1KAI1 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111493162 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-60
Identity = 173/195 (88.72%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPP---- 60
           MER  ST IFVISGFAFSILSLLVESQARDGAI SSSPPPPPPSPPPPSPPPPPPP    
Sbjct: 1   MERPLSTFIFVISGFAFSILSLLVESQARDGAISSSSPPPPPPSPPPPSPPPPPPPLSPP 60

Query: 61  -PPPLSPPQSPPLSPP--PPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQ 120
             PPLSPPQSPP SPP  PP PSPN V PPPP FVPPPPPAS S PPPIFPPPPS PSLQ
Sbjct: 61  QSPPLSPPQSPPQSPPLSPPPPSPNFV-PPPPIFVPPPPPASPSSPPPIFPPPPSPPSLQ 120

Query: 121 HRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV 180
           HRSTP PPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV
Sbjct: 121 HRSTPLPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICV 180

Query: 181 VGFLVFKRRQLLIFK 189
           VGFLVFKRRQLL FK
Sbjct: 181 VGFLVFKRRQLLRFK 194

[Close]

BLAST of Carg04330 vs. ExPASy TrEMBL
Match: A0A0A0LC75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-26
Identity = 113/188 (60.11%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           MER  +TLIFVI+GFAFS+LSLLVESQ  DGA P+ SPP P   PP PSPPPPP PPPP 
Sbjct: 1   MERPLTTLIFVITGFAFSVLSLLVESQTPDGANPTLSPPRPSSPPPSPSPPPPPLPPPPP 60

Query: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120
            PP  PP++PPPPSPS       PP F PPPPP                P  +HR  PPP
Sbjct: 61  PPPPPPPITPPPPSPS-------PPPFSPPPPP----------------PPHRHRRNPPP 120

Query: 121 PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFK 180
           P   +     K+PP   +N N++  +GSKRSLN GKKVGLFFVGIAAVLQICVVGFLVFK
Sbjct: 121 PLASSVERKKKRPPVPPKNINTN--QGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFK 163

Query: 181 RRQLLIFK 189
           RRQLL  K
Sbjct: 181 RRQLLRVK 163

[Close]

BLAST of Carg04330 vs. ExPASy TrEMBL
Match: A0A1S3CKG6 (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501988 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-22
Identity = 113/188 (60.11%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           MER  +TLIFVISGFAFS+LSLLVESQ  D A P+ S  PP PSPPPPSP PPPPP PP 
Sbjct: 1   MERPLTTLIFVISGFAFSVLSLLVESQTPDEANPTLS--PPMPSPPPPSPSPPPPPLPP- 60

Query: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120
                    PPPP       PPPPP  + PPP    SP PP F P P  P  +HR +PPP
Sbjct: 61  ---------PPPP-------PPPPPRIISPPP----SPSPPPFSPSPPPPPHRHRRSPPP 120

Query: 121 PPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFK 180
           P   +     K+PP   +N N++  + SKRSLN GKKVGLFFVGIAAVLQICVVGFLVFK
Sbjct: 121 PLASSMERKKKRPPVPPKNINTN--QASKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFK 163

Query: 181 RRQLLIFK 189
           RRQLL  K
Sbjct: 181 RRQLLRVK 163

[Close]

BLAST of Carg04330 vs. ExPASy TrEMBL
Match: A0A438K6Z4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_003252 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 104/205 (50.73%), Postives = 126/205 (61.46%), Query Frame = 0


Query: 1   MERSFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPPPPPPSPPPPSPPPPPPPPPPL 60
           ME+ FSTL+FVI GF F I ++LV++Q++  + P+++  PPPPSPPPP PPPP P PPP 
Sbjct: 1   MEQPFSTLLFVILGFGFCIYAVLVDAQSKVESKPNTT--PPPPSPPPP-PPPPHPSPPPA 60

Query: 61  SPPQSPPLSPPPPSPSPNSVPPPPPNFVPPPPPASS---SPPPPIFPPPPSLPSLQHRST 120
            PP   PLSPPPP PSP+  PPP P+  PPPPP+ S   SPPPP  PPPP  P      T
Sbjct: 61  VPPPPTPLSPPPPPPSPSPPPPPSPSPSPPPPPSPSPPPSPPPPSSPPPPQRP---RPLT 120

Query: 121 PPPPPIPASSDANKKPPEVSRN--------------NNSHNIEGSKRSLNMGKKVGLFFV 180
           PP PP P    + K     S+N              NN        + +N+GK +GL FV
Sbjct: 121 PPTPPTPNHHSSKKNSTSHSKNAATDPTSNVNPNRMNNDTAEHHHDQKINLGKTIGLLFV 180

Query: 181 GIAAVLQICVVGFLVFKRRQLLIFK 189
           GIA +LQICVVGFL FKRRQLL  K
Sbjct: 181 GIAGILQICVVGFLTFKRRQLLKLK 199

The following BLAST results are available for this feature:

BLAST of Carg04330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036411.1	2.3e-202	100.00	hypothetical protein SDJN02_00028, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606691.1	1.5e-73	97.40	hypothetical protein SDJN03_00033, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523257.1	2.2e-67	93.65	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022948467.1	1.0e-64	91.58	leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]	[more]
XP_022998566.1	3.3e-60	88.72	leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]	[more]

BLAST of Carg04330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9A4	4.9e-65	91.58	leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KAI1	1.6e-60	88.72	leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0LC75	5.8e-26	60.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1	[more]
A0A1S3CKG6	1.0e-22	60.11	leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501...	[more]
A0A438K6Z4	1.9e-16	50.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_003252 PE=4 SV=1	[more]

BLAST of Carg04330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 54..71 score: 38.89 coord: 32..48 score: 44.71 coord: 73..98 score: 36.15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..320
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..320
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 66..190
None	No IPR available	PANTHER	PTHR36721:SF1	PROLINE-RICH FAMILY PROTEIN	coord: 66..190
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 1..85
None	No IPR available	PANTHER	PTHR36721:SF1	PROLINE-RICH FAMILY PROTEIN	coord: 1..85
None	No IPR available	SUPERFAMILY	101447	Formin homology 2 domain (FH2 domain)	coord: 50..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04330-RA	Carg04330-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane