Carg04288 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04288
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	Carg_Chr01: 385776 .. 388411 (-)
RNA-Seq Expression	Carg04288
Synteny	Carg04288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAAGAAAAAGGGGGAAGCGGCATTTTACTCAGGCGAAGGGATCCGTTAATTCTACACTTTCGGGCGGGGAAAAGTGAAATCTCAAGCAAATGGCAACTCCACCGCCACCGGGGATCGGGAATTTTGAGGGAGGACCACCGCCGGCAGCACCTCAGCCGCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAACTCTGGCTCAATACTTACCCTCTCGATCGGAACCTGGTTTTCGATTACTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAATGAACAGCTCAGAATGCGCTCAATTCACCCCCTCGATCTCTCTCAACTCTCGTATGATTTCTCGTCTCCTAATTTTTTTTGTTTCTCTTGATAGAGTTTCTTTTTCTGATAGTTTTCTTCCTCTAATTGGTTGTATGTATCGCAATTGTTTTCTTTCTTCTATTTGTAGTGGCGAGGGGAAGTGGGATGCATTTTCTATGCAATTCGATAGGATAGTTCAACATTTTTTTTTTCTTTTCTCCTCGTTCAAGTGAGATTATCAAAAATTGGAACTGGAATTCTCAAGACATTGTTAATTGAAATCCTGGGCTCCAATTTTCATTATAATGATGGGGAAATCTTCTGTTGAACAGAAAAATGACAGGGATAGAGTACATGCTGAATGAAGTTATGGAGCCCCACCTTTTTGTTTTCCGAAAGCAGAAGAGGGATGGTCCTGAGAAAGTCACACCAATGCTGACTTATTATATCTTGGATGGTTCTATTTACCAGGCGCCTCAGCTTTGCAATGTCTTTGCTGCCCGAGTTGTGAGATTATCATACTTATCTTTCTCTGTCAATGCCATTTATTTGGTGCAATCTTAGATTTTTTTTTTTTTGTTTGTTTGTTTGTTGATAATTGATGCATATTGGTACGAGTTCATAGCTGTATTCAGTAAAATATGGTAATAGGAAGTATATTTCAACTGGAAACTTAGTTTCTGTTCTAATTAGTGATATTGTAATCATGCTTCATCATCTTAAAGGTTGGTTTTTTTTTGACCCGTGCTATGAAATGCAAGAAGAATTTGTACTAAGATGTAAAGCTAGTCTGGATTCTGCTTCTCTCTTGTTCTGTTTTGTTGGAGACTTATGTTTAGTCTTCATTATACCACAGAGCCGGGCACTATATTACATATCGAAGGCCTTTACTACTGCTTCCTCAAAGTTGGAGAAGATTGGATATGGTATCTAACTCTTTATGATATAATTTTTGCTCTTTTAAGTTATCAGTAAAAGATGATCATTCATCATGATTTCACGTGCTCAGGGTTTTGCTATCTTATCTGAACCTGGTTTCGTTTTCAAATTTGAGTTGAATCATGCTCATTTAGCTATTATTTTTTTTATTGTTGCTAATGAAGAATTAGAAACTCCCTGACACCAAAAATAAGAAAGAGAGAGAAACTCCATAATAGCCTTTCAGGCTCTAAGATAGTTGATGTTGATTGTAATTGGTACCCAATAGGCTTGATTTAAGTTCTTTGGAATTCAAACTTCAGTTTCAGAAATCAACTTTTGGGTCTTATATGCAACAATTCATTTTGATAAGAAATGTAGAATATTATGGATACAGAGACATTGCCTAATAGCCCAATGATCTTCGAATTTTGTTATTTTAGCTTGCAGCTTCGATTTTATTGACTGTTTTCTCATGGTTCAGTCGATTCTGAGAACGAGAGTGAAGAAGTAAAACCTGCAAAAGGGACCATTGACTTTAAGGAAGTAAAGCGAGTTGATCGTATTCTTGCTTCCTTACAGCGCAAGGTAACTCAAATATCGATATATTGATACTGTATGAGCTTTATCTTTTCTACAACAGAAAATCATGTTGTGTTTGTGTATCTATTGCAAAGAGCTAATTTATGAAGTGTTCAAATTTAAGATATGAGAACTTGGGTGCAGTTTTTCTTTAGTCACAATCTCACCTGATGAGTTCTTTTAGTTTTGTTTGATAAATGTTTTTGAATTCTCTATTTTTTGAACTAAAACATTGTGAAAACATGTATGAACTAAAGGGGGAACAGAAATGACTAGGGCTTTATATGTGTCCTGAGAAAAGGCTCAAATGAACAAAATCTCATATATTGTACCTGTAATTAATCAACATTAATACAATTAAACTTCTTAAAGAAATTAAATCATCTTAGGGGATAAGCTGCTAGTATCGGCTGCAAACTTGTTCTTGATTTATATTTTTCATATGGAGACTTAGTTGATCATGTTCATGTAGAGTTTATATCTCTAATGCATTGGCTGAAGATCGTCATTAAAAGGCAAAAATTTCTTGTTTGCAGCTGCCACCTGCCCCTCCACCCCCACCATTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAGCCAGCAAGGAGAACTGCAACAGCCTGCAGCAGATCCCATTATTGATCAAGGCCCTGCTAAAAGGATGAAATTTTGAAGGAAGTGCTTATGCTATGTTTCTCATTCATGTTGAGAAACATATTTAAACCTGCAACCGAAGCTCAACACGGATGAAATGGCTGCCCGATGCATGGTGAGTTATCAACAACACCCCCCCCCCCCCCCCCCCC

mRNA sequence

AAACAAAGAAAAAGGGGGAAGCGGCATTTTACTCAGGCGAAGGGATCCGTTAATTCTACACTTTCGGGCGGGGAAAAGTGAAATCTCAAGCAAATGGCAACTCCACCGCCACCGGGGATCGGGAATTTTGAGGGAGGACCACCGCCGGCAGCACCTCAGCCGCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAACTCTGGCTCAATACTTACCCTCTCGATCGGAACCTGGTTTTCGATTACTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAATGAACAGCTCAGAATGCGCTCAATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGGATAGAGTACATGCTGAATGAAGTTATGGAGCCCCACCTTTTTGTTTTCCGAAAGCAGAAGAGGGATGGTCCTGAGAAAGTCACACCAATGCTGACTTATTATATCTTGGATGGTTCTATTTACCAGGCGCCTCAGCTTTGCAATGTCTTTGCTGCCCGAGTTAGCCGGGCACTATATTACATATCGAAGGCCTTTACTACTGCTTCCTCAAAGTTGGAGAAGATTGGATATGTCGATTCTGAGAACGAGAGTGAAGAAGTAAAACCTGCAAAAGGGACCATTGACTTTAAGGAAGTAAAGCGAGTTGATCGTATTCTTGCTTCCTTACAGCGCAAGCTGCCACCTGCCCCTCCACCCCCACCATTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAGCCAGCAAGGAGAACTGCAACAGCCTGCAGCAGATCCCATTATTGATCAAGGCCCTGCTAAAAGGATGAAATTTTGAAGGAAGTGCTTATGCTATGTTTCTCATTCATGTTGAGAAACATATTTAAACCTGCAACCGAAGCTCAACACGGATGAAATGGCTGCCCGATGCATGGTGAGTTATCAACAACACCCCCCCCCCCCCCCCCCCC

Coding sequence (CDS)

ATGGCAACTCCACCGCCACCGGGGATCGGGAATTTTGAGGGAGGACCACCGCCGGCAGCACCTCAGCCGCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAACTCTGGCTCAATACTTACCCTCTCGATCGGAACCTGGTTTTCGATTACTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAATGAACAGCTCAGAATGCGCTCAATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGGATAGAGTACATGCTGAATGAAGTTATGGAGCCCCACCTTTTTGTTTTCCGAAAGCAGAAGAGGGATGGTCCTGAGAAAGTCACACCAATGCTGACTTATTATATCTTGGATGGTTCTATTTACCAGGCGCCTCAGCTTTGCAATGTCTTTGCTGCCCGAGTTAGCCGGGCACTATATTACATATCGAAGGCCTTTACTACTGCTTCCTCAAAGTTGGAGAAGATTGGATATGTCGATTCTGAGAACGAGAGTGAAGAAGTAAAACCTGCAAAAGGGACCATTGACTTTAAGGAAGTAAAGCGAGTTGATCGTATTCTTGCTTCCTTACAGCGCAAGCTGCCACCTGCCCCTCCACCCCCACCATTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAGCCAGCAAGGAGAACTGCAACAGCCTGCAGCAGATCCCATTATTGATCAAGGCCCTGCTAAAAGGATGAAATTTTGA

Protein sequence

MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF

Homology

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BLAST of Carg04288 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 505.0 bits (1299), Expect = 3.8e-139
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. NCBI nr
Match: KAG6606737.1 (Mediator of RNA polymerase II transcription subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 503.8 bits (1296), Expect = 8.4e-139
Identity = 249/250 (99.60%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE+EEVKPAKGTI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENENEEVKPAKGTI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. NCBI nr
Match: XP_022998637.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima])

HSP 1 Score: 500.7 bits (1288), Expect = 7.1e-138
Identity = 248/250 (99.20%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPPPAAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPPAAPQQPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKPAKGTI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEDVKPAKGTI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. NCBI nr
Match: XP_022948318.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita moschata])

HSP 1 Score: 498.0 bits (1281), Expect = 4.6e-137
Identity = 248/250 (99.20%), Postives = 248/250 (99.20%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAK TI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia])

HSP 1 Score: 475.3 bits (1222), Expect = 3.2e-130
Identity = 237/254 (93.31%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 1   MATPP----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGI NFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180

Query: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240
           K TI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  ELQQP+A
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSA 240

Query: 241 DPIIDQGPAKRMKF 251
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 254

[Close]

BLAST of Carg04288 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-86
Identity = 175/278 (62.95%), Postives = 193/278 (69.42%), Query Frame = 0


Query: 16  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 75
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 76  LDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 135
           LDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 136 FAARVSRALYYISKAFTTASSKLEKI---------------------------------- 195
           FAARVSR +Y ISKAFT A+SKLE I                                  
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGE 202

Query: 196 ---GY------VDSENESEEVKPAKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGY 251
              G+       +++NE  E KPA  T+D KE+KRVD IL SL RKL P PPPPPFPEGY
Sbjct: 203 QVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGY 262

[Close]

BLAST of Carg04288 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 76/191 (39.79%), Postives = 112/191 (58.64%), Query Frame = 0


Query: 27  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 86
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 87  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYY 146
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RVS+++ +
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 184

Query: 147 ISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKGTIDFKEVKRVDRILASLQRKL 206
           +S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D+++ SL  K 
Sbjct: 185 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 244

Query: 207 PPAPPPPPFPE 211
           P    P   P+
Sbjct: 245 PAINRPVENPQ 252

[Close]

BLAST of Carg04288 vs. ExPASy Swiss-Prot
Match: Q3SZY9 (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23
Identity = 87/241 (36.10%), Postives = 123/241 (51.04%), Query Frame = 0


Query: 27  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 86
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 87  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 146
            G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 147 YYISKAFTTASSKLE---KIGYVDSENESEEVKPAKGTIDFKEV-------KRVDRILAS 206
           + I  AF  A S        GY     + EE    K  +  KE        +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 188

Query: 207 LQRKLPPAPPPPPFPEGYVPAPAS--EAEKGPESQQGELQQPAADPIIDQG----PAKRM 250
           L++K PP        E  VP   +  EAE  PE+ + E ++ A +     G    P KRM
Sbjct: 189 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGPPEKRM 244

[Close]

BLAST of Carg04288 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23
Identity = 87/241 (36.10%), Postives = 125/241 (51.87%), Query Frame = 0


Query: 27  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 86
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 87  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 146
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 147 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP-AKGTIDFKEV---KRVDRILAS 206
           + I  AF  A S        GY        E E+VKP AK   +   +   +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 188

Query: 207 LQRKLPPAPPPPPFPEGYVPAPASEAEKGP-----ESQQGELQQPAADPIIDQG-PAKRM 250
           L++K PP        E  VP   ++ E  P     +S++ E  +     +  +G P KRM
Sbjct: 189 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGPPEKRM 244

[Close]

BLAST of Carg04288 vs. ExPASy Swiss-Prot
Match: Q5RD94 (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-22
Identity = 88/244 (36.07%), Postives = 126/244 (51.64%), Query Frame = 0


Query: 27  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 86
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 87  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 146
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 147 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP-AKGTIDFKEV---KRVDRILAS 206
           + I  AF  A S        GY        E ++V+P AK   +   +   +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 188

Query: 207 LQRKLPP-----APPPPPFPEGYVPAPASEAEKGPES---QQGELQQPAADPIIDQG-PA 250
           L++K PP      P   P P   V     EAE  PE+   ++ E  +     +  +G P 
Sbjct: 189 LRQKFPPKFVQLKPGEKPVP---VDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGPPE 244

[Close]

BLAST of Carg04288 vs. ExPASy TrEMBL
Match: A0A6J1K8I9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111493224 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 3.4e-138
Identity = 248/250 (99.20%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPPPAAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPPAAPQQPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKPAKGTI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEDVKPAKGTI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.2e-137
Identity = 248/250 (99.20%), Postives = 248/250 (99.20%), Query Frame = 0


Query: 1   MATPPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60
           MATPPPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD
Sbjct: 1   MATPPPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYD 60

Query: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120
           WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY
Sbjct: 61  WTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYY 120

Query: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKGTI 180
           ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAK TI
Sbjct: 121 ILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETI 180

Query: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240
           DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII
Sbjct: 181 DFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPII 240

Query: 241 DQGPAKRMKF 251
           DQGPAKRMKF
Sbjct: 241 DQGPAKRMKF 250

[Close]

BLAST of Carg04288 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 237/254 (93.31%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 1   MATPP----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGI NFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180

Query: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240
           K TI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGYVPAP +E EKGPE+Q  ELQQP+A
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSA 240

Query: 241 DPIIDQGPAKRMKF 251
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 254

[Close]

BLAST of Carg04288 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 237/255 (92.94%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MATPP-----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPP     PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPA 240
           AK TI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY PAP ++ EKGPE+QQGE QQP+
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 251
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Carg04288 vs. ExPASy TrEMBL
Match: A0A1S3BHR9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 237/255 (92.94%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MATPP-----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPP     PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPA 240
           AK TI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY PAP ++ EKGPE+QQGE QQP+
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 251
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Carg04288 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-94
Identity = 177/237 (74.68%), Postives = 194/237 (81.86%), Query Frame = 0


Query: 16  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 75
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 76  LDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 135
           LDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 136 FAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKGTIDFKEVKRVDRILA 195
           FAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KPA  T+D KE+KRVD IL 
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEMKRVDVILT 202

Query: 196 SLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAADPIIDQGPAKRMKF 251
           SL RKL P PPPPPFPEGYV   A   ++   +Q GE Q P  DPIIDQGPAKRMKF
Sbjct: 203 SLYRKLAPPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 257

[Close]

BLAST of Carg04288 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-87
Identity = 175/278 (62.95%), Postives = 193/278 (69.42%), Query Frame = 0


Query: 16  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 75
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 76  LDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 135
           LDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 136 FAARVSRALYYISKAFTTASSKLEKI---------------------------------- 195
           FAARVSR +Y ISKAFT A+SKLE I                                  
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGE 202

Query: 196 ---GY------VDSENESEEVKPAKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGY 251
              G+       +++NE  E KPA  T+D KE+KRVD IL SL RKL P PPPPPFPEGY
Sbjct: 203 QVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGY 262

The following BLAST results are available for this feature:

BLAST of Carg04288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524903.1	3.8e-139	100.00	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]
KAG6606737.1	8.4e-139	99.60	Mediator of RNA polymerase II transcription subunit 6, partial [Cucurbita argyro...	[more]
XP_022998637.1	7.1e-138	99.20	mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima]	[more]
XP_022948318.1	4.6e-137	99.20	mediator of RNA polymerase II transcription subunit 6 [Cucurbita moschata]	[more]
XP_022148297.1	3.2e-130	93.31	mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]	[more]

BLAST of Carg04288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IXJ7	1.7e-86	62.95	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
Q54PN3	2.1e-28	39.79	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
Q3SZY9	7.9e-23	36.10	Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=M...	[more]
Q921D4	7.9e-23	36.10	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
Q5RD94	3.9e-22	36.07	Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN...	[more]

BLAST of Carg04288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8I9	3.4e-138	99.20	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita maxima OX=366...	[more]
A0A6J1G911	2.2e-137	99.20	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3...	[more]
A0A6J1D4P7	1.5e-130	93.31	Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=...	[more]
A0A5D3CDR8	2.0e-130	92.94	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuw...	[more]
A0A1S3BHR9	2.0e-130	92.94	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Carg04288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21350.1	3.9e-94	74.68	RNA polymerase transcriptional regulation mediator-related	[more]
AT3G21350.2	1.2e-87	62.95	RNA polymerase transcriptional regulation mediator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016820	Mediator complex, subunit Med6, metazoa/plant	PIRSF	PIRSF023869	MED6_meta/plant	coord: 16..250 e-value: 1.2E-86 score: 287.9
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 31..156 e-value: 7.6E-41 score: 139.0
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 16..250
IPR038566	Mediator complex, subunit Med6 superfamily	GENE3D	3.10.450.580	Mediator complex, subunit Med6	coord: 25..154 e-value: 2.3E-44 score: 152.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 16..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04288-RA	Carg04288-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity