Carg04112 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04112
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr19: 7703473 .. 7705224 (-)
RNA-Seq Expression	Carg04112
Synteny	Carg04112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAGTATAATGCAAGGTGGTTGTTACATGATTTCTTTTTCGTTCCAAAAGTACCGTATTATACGTAGTAGAACACATAAGGTACAAACCCGGTTCGGGATTGCTGCGTATTTCTGTAGAAACATATATAGTAAGATGAAAAATTATGTGGCCTTTACGCCCAGACTGCCAACATTGTGCAGTTTAACTCTGATATGATAATCTCGAGGTTTAACATGTCGGTATCCTTATGTTCAAGTTTCTAGTTTCGATTTAGATTCCTTAATTACATAACAATTTCAAAATTGTTTTCCTTCAAATGTCTGCCCAAACTGCCAGTTTGCAGGTGCAACGCTGTAGGAAGTAAGTGTTCTTCCAATGCTAGAGGTAACTTCGAACGAGAGAGGTTGCCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTTGCCAATGGTATCCATCCTGTTCTTGATCCTTTTACCTTCACTGCCACTAATTCACCATCCATTCCAACATTGGTAATCAGAACTTGAAAGAAACGAGAATTTCCACTAACCGTGAACCTCAATCCACCGCTTCGATCACACCTCGTCCTACACACATTCAAAACAAGTTTTTTCCCCTTAGCTGAGGATGACAAATCGTTTGAATCTATATGCATTTAGATTGATTCTACCTCCTATATTGAACTGGTACAATATCTGCTTTTTTCTCTGATATTTCAGCAAATGCTGCCTCTGACATCTCAAAATGTTCTTTAGGAAAATTACACCAACCACCATAATCAGAAGATAGGCCGTAATTTGGAGGACAGAAGTCGGTGGCTGTTAGAACAACGGTCGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGGTACTCCCTCTATTAAACAACATGCTACTCAATCCTGCGCTATATTTTCCATAGCTAATTTTATGCAGATCTCCATATCCACACGCACCTTCTGCAACATTAGTAGGAAAAAAGAGCATTTGAAATACTAATTTCCCTCCCTTTAGGTTACAATATTCCAGACATGACTATCTTGAAAGTGATTATAAAATGGTCAAAAGCACTTTTTTCACTCATAATTCATCTAATATTTGGTTTTTATAGGCTTTTGTATGCAATTTTCAGACTATCAAAATTAAGCTTCGGATTAATAGAAGCATGTTTCTAAATGATTTTGAACGTGACAAAAATGTTTTTAACTATTTCAAAATCACTCACTAACATGTTCTAAACATTGATTATCGAAGTTATGATTTCCAGTTTCCACCTTTTGAAGGTAACCCTTGAACACTCATATAAGAGCTTTTGCGAACCCAGAAAAGCACCATCACCATGTTTAAACACTAATATAATCTTATGAGCTTTCAGACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAAAGAAGAATATAAGGTCTTGAAGAAGCCTGTGCAGTATGTATACCTAAAATGAGGTATATTTCCTTTTGAATTTTTTGTTCCTCCTTTAAGAAAAG

mRNA sequence

ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAAAGAAGAATATAAGGTCTTGAAGAAGCCTGTGCAGTATGTATACCTAAAATGAGGTATATTTCCTTTTGAATTTTTTGTTCCTCCTTTAAGAAAAG

Coding sequence (CDS)

ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAA

Protein sequence

MQIRADHLATYFSHSVASMRSSSKSTQDRNRREKSETKEKSTCNNGPICFFGVCCSSRFPLFIHSRKEIGCLQKNQVDYYSYKGSH

Homology

[Close]

BLAST of Carg04112 vs. NCBI nr
Match: KAG7011828.1 (hypothetical protein SDJN02_26734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MQIRADHLATYFSHSVASMRSSSKSTQDRNRREKSETKEKSTCNNGPICFFGVCCSSRFP 60
          MQIRADHLATYFSHSVASMRSSSKSTQDRNRREKSETKEKSTCNNGPICFFGVCCSSRFP
Sbjct: 1  MQIRADHLATYFSHSVASMRSSSKSTQDRNRREKSETKEKSTCNNGPICFFGVCCSSRFP 60

Query: 61 LFIHSRKEIGCLQKNQVDYYSYKGSH 87
          LFIHSRKEIGCLQKNQVDYYSYKGSH
Sbjct: 61 LFIHSRKEIGCLQKNQVDYYSYKGSH 86

The following BLAST results are available for this feature:

BLAST of Carg04112 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011828.1	2.8e-41	100.00	hypothetical protein SDJN02_26734, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04112 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04112 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04112 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04112-RA	Carg04112-RA	mRNA