Carg03996 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03996
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Gibberellin-regulated protein 2
Location	Carg_Chr12: 2469632 .. 2470324 (+)
RNA-Seq Expression	Carg03996
Synteny	Carg03996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCCAAAATGGCTATCTCCTCCAAAGCTCTCATTGCTTCCCTCCTCCTCTCTCTCCTCTTCCTCCACTCTGTAAAACCCCAAACCCATTTTTTTAAAATTAATTTTTTTTAAAATTTAATCTCTAAAATCTCATAATTTTCTTATTTTAATTCCAGGTGGAATCCATTGGAGCTGCTATGGTCTCCCCAAGCCCTCAGAAAATGGGTAATTATAATTTAATTTAATTTAATTTAATTAATTTTATTTATTGTAATTTATCGGAGTTGAACGGTTTGGTTCCAGACTGCGGCGGCGCGTGTGCGGCAAGGTGCCGGCTGTCGTCGAGGCCGAGGCTGTGCCATAGGGCGTGCGGGACGTGCTGTCAGCGGTGCAACTGTGTTCCGCCGGGGACTTCCGGCAACCACCATATGTGCCCCTGCTACGCCAGCTTGACCACCCACGGCGGCCGCCTCAAGTGTCCCTGAGTTCGCCGTCTCTCAACTCGTTTATGTGTAAATCGTTCACGCTCTTTTGTTTTGTGTTTTAAAGGATATATGAATATCATAAACTGTGTCTCTTTTGTTGTAATAAAGGTGACGTGTCTTGCCTCTGTGTAGTTCTCTGTTCTTATTTTATTTTATTTTATTTTTTGAAAATGATAGTAGAAAGGGTAATTTCGTAAATTTGGATTTATTTGTAAATAAATAAAAA

mRNA sequence

ATCTCCAAAATGGCTATCTCCTCCAAAGCTCTCATTGCTTCCCTCCTCCTCTCTCTCCTCTTCCTCCACTCTGTGGAATCCATTGGAGCTGCTATGGTCTCCCCAAGCCCTCAGAAAATGGACTGCGGCGGCGCGTGTGCGGCAAGGTGCCGGCTGTCGTCGAGGCCGAGGCTGTGCCATAGGGCGTGCGGGACGTGCTGTCAGCGGTGCAACTGTGTTCCGCCGGGGACTTCCGGCAACCACCATATGTGCCCCTGCTACGCCAGCTTGACCACCCACGGCGGCCGCCTCAAGTGTCCCTGAGTTCGCCGTCTCTCAACTCGTTTATGTGTAAATCGTTCACGCTCTTTTGTTTTGTGTTTTAAAGGATATATGAATATCATAAACTGTGTCTCTTTTGTTGTAATAAAGGTGACGTGTCTTGCCTCTGTGTAGTTCTCTGTTCTTATTTTATTTTATTTTATTTTTTGAAAATGATAGTAGAAAGGGTAATTTCGTAAATTTGGATTTATTTGTAAATAAATAAAAA

Coding sequence (CDS)

ATGGCTATCTCCTCCAAAGCTCTCATTGCTTCCCTCCTCCTCTCTCTCCTCTTCCTCCACTCTGTGGAATCCATTGGAGCTGCTATGGTCTCCCCAAGCCCTCAGAAAATGGACTGCGGCGGCGCGTGTGCGGCAAGGTGCCGGCTGTCGTCGAGGCCGAGGCTGTGCCATAGGGCGTGCGGGACGTGCTGTCAGCGGTGCAACTGTGTTCCGCCGGGGACTTCCGGCAACCACCATATGTGCCCCTGCTACGCCAGCTTGACCACCCACGGCGGCCGCCTCAAGTGTCCCTGA

Protein sequence

MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

Homology

[Close]

BLAST of Carg03996 vs. NCBI nr
Match: XP_022951559.1 (snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020456.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 7.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. NCBI nr
Match: XP_023002563.1 (snakin-2-like [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHH+CPCYASLTTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. NCBI nr
Match: XP_023537913.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 6.5e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSR RLCHRAC
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRQRLCHRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. NCBI nr
Match: XP_038886089.1 (snakin-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          M+  SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSR RLC+RAC
Sbjct: 1  MSFFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRQRLCNRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCC+RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 GTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. NCBI nr
Match: XP_038886088.1 (snakin-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          M+  SKALIASL LSLLFLHS  VES G  ++ PSPQKMDCGGACA RCRLSSR RLC+R
Sbjct: 1  MSFFSKALIASLFLSLLFLHSVKVESNGVGLIPPSPQKMDCGGACAGRCRLSSRQRLCNR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          ACGTCC+RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 ACGTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99

[Close]

BLAST of Carg03996 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-31
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MAISSKALIASLLLSLLFLHSVESIGAAMVSP--------SPQKMDCGGACAARCRLSSR 60
           MAI SKAL ASLLLSLL L  V+SI    V+         S +K+DCGGACAARCRLSSR
Sbjct: 1   MAI-SKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSR 60

Query: 61  PRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
           PRLC+RACGTCC RCNCVPPGTSGN   CPCYASLTTHG + KCP
Sbjct: 61  PRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Carg03996 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-29
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MAI SKALIASLL+SLL L  V++    +   +   +K+DCG AC ARCRLS RPRLCHR
Sbjct: 1  MAI-SKALIASLLISLLVLQLVQADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          ACGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Sbjct: 61 ACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg03996 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.6e-26
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 6  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQ 65
          + L+ASLL+SLL L  V +    + S    K+DC   C  RC LSSRP LCHRACGTCC 
Sbjct: 5  RVLLASLLISLLVLDFVHA--DMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCA 64

Query: 66 RCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          RCNCV PGTSGN+  CPCY SLTTHGGR KCP
Sbjct: 65 RCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg03996 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MAI    L+  L+L  L  F   V +   + V     K+DCGG C  RC  SSRP LC R
Sbjct: 1  MAIFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          AC +CC RCNCVPPGT+GNHH+CPCYAS+TT GGRLKCP
Sbjct: 61 ACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Carg03996 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-24
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MA+    L+  L++  L  +   V +   A V     K+DCGG C  RC  SSR +LC R
Sbjct: 1  MAVFRSTLVLLLIIVCLTTYELHVHAADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          AC +CC RCNCVPPGTSGN H+CPCYAS+TTHGGRLKCP
Sbjct: 61 ACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Carg03996 vs. ExPASy TrEMBL
Match: A0A6J1GJ50 (snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. ExPASy TrEMBL
Match: A0A6J1KTY1 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.3e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHH+CPCYASLTTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. ExPASy TrEMBL
Match: A0A1S3BBY7 (snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-37
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          M+I +KAL ASLLLSLLFLH VES G  ++  SPQKMDC GAC  RC LSSRPRLC+RAC
Sbjct: 1  MSILTKALFASLLLSLLFLHFVESSGVGLLPRSPQKMDCRGACTRRCSLSSRPRLCNRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. ExPASy TrEMBL
Match: A0A0A0LNS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.3e-36
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRAC 60
          M I +K L ASLLLSLLFLH VES G  ++ P+P++MDC GAC  RC LSSRPRLC+RAC
Sbjct: 1  MFILTKPLFASLLLSLLFLHFVESNGVGLLPPNPRRMDCRGACTRRCTLSSRPRLCNRAC 60

Query: 61 GTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          GTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 GTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Carg03996 vs. ExPASy TrEMBL
Match: A0A6J1CRW3 (snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.4e-33
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MAISSKALIAS--LLLSLLFLHS---------VESIGAAMVSPS-PQKMDCGGACAARCR 60
           M++ SK LI +  LL SLLFLH+         VES+  A +SPS P KMDCGGACA RCR
Sbjct: 1   MSMFSKVLIVASLLLFSLLFLHAAADDHPALQVESVDQAGISPSTPYKMDCGGACAGRCR 60

Query: 61  LSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
           LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGR KCP
Sbjct: 61  LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKCP 109

[Close]

BLAST of Carg03996 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-30
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVES-IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRA 60
          MAI SKALIASLL+SLL L  V++   +   +   +K+DCG AC ARCRLS RPRLCHRA
Sbjct: 1  MAI-SKALIASLLISLLVLQLVQADENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRA 60

Query: 61 CGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          CGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Sbjct: 61 CGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Carg03996 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-30
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MAI SKALIASLL+SLL L  V++    +   +   +K+DCG AC ARCRLS RPRLCHR
Sbjct: 1  MAI-SKALIASLLISLLVLQLVQADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          ACGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Sbjct: 61 ACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Carg03996 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 117.5 bits (293), Expect = 6.1e-27
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 6  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQ 65
          + L+ASLL+SLL L  V +    + S    K+DC   C  RC LSSRP LCHRACGTCC 
Sbjct: 5  RVLLASLLISLLVLDFVHA--DMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCA 64

Query: 66 RCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          RCNCV PGTSGN+  CPCY SLTTHGGR KCP
Sbjct: 65 RCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Carg03996 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MAI    L+  L+L  L  F   V +   + V     K+DCGG C  RC  SSRP LC R
Sbjct: 1  MAIFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          AC +CC RCNCVPPGT+GNHH+CPCYAS+TT GGRLKCP
Sbjct: 61 ACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Carg03996 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-25
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHR 60
          MA+    L+  L++  L  +   V +   A V     K+DCGG C  RC  SSR +LC R
Sbjct: 1  MAVFRSTLVLLLIIVCLTTYELHVHAADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLR 60

Query: 61 ACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 98
          AC +CC RCNCVPPGTSGN H+CPCYAS+TTHGGRLKCP
Sbjct: 61 ACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Carg03996 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951559.1	7.7e-48	100.00	snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita ar...	[more]
XP_023002563.1	1.7e-47	98.97	snakin-2-like [Cucurbita maxima]	[more]
XP_023537913.1	6.5e-47	98.97	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038886089.1	1.7e-39	82.47	snakin-2-like isoform X2 [Benincasa hispida]	[more]
XP_038886088.1	5.5e-38	80.81	snakin-2-like isoform X1 [Benincasa hispida]	[more]

BLAST of Carg03996 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	1.0e-31	70.48	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	4.9e-29	68.69	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	8.6e-26	63.04	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46687	1.6e-24	57.58	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
P46688	4.7e-24	55.56	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]

BLAST of Carg03996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ50	3.7e-48	100.00	snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1	[more]
A0A6J1KTY1	8.3e-48	98.97	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1	[more]
A0A1S3BBY7	3.0e-37	79.38	snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1	[more]
A0A0A0LNS5	4.3e-36	76.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1	[more]
A0A6J1CRW3	3.4e-33	70.64	snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1	[more]

BLAST of Carg03996 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	2.6e-30	69.39	GAST1 protein homolog 1	[more]
AT1G75750.1	3.5e-30	68.69	GAST1 protein homolog 1	[more]
AT2G18420.1	6.1e-27	63.04	Gibberellin-regulated family protein	[more]
AT4G09600.1	1.1e-25	57.58	GAST1 protein homolog 3	[more]
AT4G09610.1	3.3e-25	55.56	GAST1 protein homolog 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 38..97 e-value: 3.6E-22 score: 78.3
None	No IPR available	PANTHER	PTHR23201:SF66	GIBBERELLIN-REGULATED FAMILY PROTEIN	coord: 4..97
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 4..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03996-RA	Carg03996-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005576	extracellular region