Carg03991 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03991
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Location	Carg_Chr12: 2452740 .. 2454699 (+)
RNA-Seq Expression	Carg03991
Synteny	Carg03991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAATCCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTGATCTGCGATGAGCACGGCATCGACGCCACTGGAAAATACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGCAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTTGTTTTTGGCCAGTCCGGTGCTGGAAATAATTGGGCCAAGGGACATTACACTGAAGGAGCGGAGTTGATTGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGGTATGGTATTCTCTGCTCTGTTCTTCGATTATACATTCTGATTAAACTGCTTTCTGATTCGAAGGAATACGTTCGTTTCGATTGAATCATTTGTGAATCCTACTTTTACATCCTGATTTTACTGCTTCATGAATCCTTTCGTTTCGATTGAACATGTGCTTACATTCCGAATTTCTGATTACACTGCTTCATGAATTGAAAGAATCTGTTCGTTTTGATTGAATCTTGACCTGCATTCTGATTATACTGCTTCAGGAATTGAATGAATCTTTTCGTTTCTATTGAACTATTCGCGAATCGCATTTTATGCGTCGAAAATCTTCGTGTTCGTCAAATTTCCTGAATACTTTTCAGTCCAATATTCTCTGGTATATCCAACGCATGTGAAAGACTTTTCGTTGTTCTTATCGAATTTTTGGCTTAAAGTTCAAAAAACGATCAAATATCGTCGGATTTCATTTTCCTCGAAGCAAGATAAGACTAGAGGGCATGAACAACAAAAATATCTCCATTATTGACGTGAGAAACGGGAGATGATAAAATTGAGAAATCAACTGTTCTGATTTCCTTCATATTGTTAATATTATTAGTAAAGTAGAAGGAGAAAGCAATGGTTGCTGTAACCTTTCTCAGATCCATATCCGCTACCTACTTAATTTGCTTTGGCAACATCACACAGTTGACTGTTCTTTAAATCTCCGACAATTTTATTTGTTCTTCCTTGAAAAACACGATTATTTGCTTTTCTTCTTTTAAACAACTGAAAATTAAGTTCATCAATCTTGATTTGCTAACTGCTAATTCTCCTCGCCATTTACTGCCTTCTTCACTCTAATTGGAAAGATGGGATACCAAATTTTGTCCATACCCAAAAATATACTTAGAGATTAAACAAACAGGAAAGGATCCTCTACCACGTTTGGTATTGCAATTACAACTGGCTTTTAACATCCTCAACAATACTAATAATTGCCTTCTTGCTATTAATTAAAGCTTTCATGAATTACTGTTCTTTACGATCATGATCTGGTTTTTTTACTGAGCTATATGATTTGTGTGGTTTGTGAAGGGGACAATGTTGGGTGGTGAGTCGGTCCCACATTTGTCTCATGCATTTAATCCATTGGAATATTTTATTCCACCTATTTCAACTTGAAATAAAAGAATGCCAACTTTAATGGTCAGAAAATATTATTTTTTCTCACTCCCACCACTCCATGATTGGATAATTGTCGTATTCTGGAGCTACCGTACCGACACTACCTTTTCTTATCAAAATGAATAGCGTTCATGAATAGTGATCACATTGAGATAAATTACAATGCAACTATAAATTGCAGTAAAAGTGAAAACATGACCTTTTTACTTCCAAGATCTTAATATTTGACATATTACTTGCTGCAGAAAAGTGGTGTGACAGACGGGGATTAGAGTTCTATCATTCATGCTGTAGATTTTTTGAATGGCTCTAATATGGGGATGCCCAAGAAACAAATTGTTAACCATTTTTCCTATTTCTATTTGTTTATAGCTTATCCCAAGTGGGGTTTTTGTAAATAA

mRNA sequence

ATGAGAGAAATCCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTGATCTGCGATGAGCACGGCATCGACGCCACTGGAAAATACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGCAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTTGTTTTTGGCCAGTCCGGTGCTGGAAATAATTGGGCCAAGGGACATTACACTGAAGGAGCGGAGTTGATTGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGCTTATCCCAAGTGGGGTTTTTGTAAATAA

Coding sequence (CDS)

ATGAGAGAAATCCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTGATCTGCGATGAGCACGGCATCGACGCCACTGGAAAATACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGCAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTTGTTTTTGGCCAGTCCGGTGCTGGAAATAATTGGGCCAAGGGACATTACACTGAAGGAGCGGAGTTGATTGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGCTTATCCCAAGTGGGGTTTTTGTAAATAA

Protein sequence

MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQAYPKWGFCK

Homology

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BLAST of Carg03991 vs. NCBI nr
Match: KAG7020452.1 (Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.4 bits (799), Expect = 2.0e-81
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAYPKWGFCK 143
           VVRKEAENCDCLQAYPKWGFCK
Sbjct: 121 VVRKEAENCDCLQAYPKWGFCK 142

[Close]

BLAST of Carg03991 vs. NCBI nr
Match: XP_022962240.1 (tubulin beta chain-like [Cucurbita moschata] >XP_022996981.1 tubulin beta chain-like [Cucurbita maxima] >XP_023546226.1 tubulin beta chain-like [Cucurbita pepo subsp. pepo] >KAG6598504.1 Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. NCBI nr
Match: XP_038885170.1 (tubulin beta chain-like [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. NCBI nr
Match: XP_008444814.1 (PREDICTED: tubulin beta chain [Cucumis melo] >KAA0065160.1 tubulin beta chain [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. NCBI nr
Match: XP_023002345.1 (tubulin beta chain-like [Cucurbita maxima] >XP_023537875.1 tubulin beta chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy Swiss-Prot
Match: Q6VAF6 (Tubulin beta-6 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 9.5e-74
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TGKYNGD SSD+QLERI+VYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy Swiss-Prot
Match: P12411 (Tubulin beta-1 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-73
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 134

[Close]

BLAST of Carg03991 vs. ExPASy Swiss-Prot
Match: Q40665 (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 8.0e-73
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  SDLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD--SDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

[Close]

BLAST of Carg03991 vs. ExPASy Swiss-Prot
Match: Q6VAF7 (Tubulin beta-5 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.0e-73
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHG+D TGKYNGD  SDLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGD--SDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

[Close]

BLAST of Carg03991 vs. ExPASy Swiss-Prot
Match: P28551 (Tubulin beta chain (Fragment) OS=Glycine max OX=3847 GN=TUBB PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 2.3e-72
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  S+LQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD--SELQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

[Close]

BLAST of Carg03991 vs. ExPASy TrEMBL
Match: A0A6J1K690 (Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111492047 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.2e-75
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy TrEMBL
Match: A0A6J1KNN8 (Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111496210 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.2e-75
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy TrEMBL
Match: A0A5A7VD89 (Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004960 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.2e-75
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy TrEMBL
Match: A0A0A0LPG6 (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_2G368830 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.2e-75
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. ExPASy TrEMBL
Match: A0A6J1CRF9 (Tubulin beta chain OS=Momordica charantia OX=3673 GN=LOC111013906 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.2e-75
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 135

[Close]

BLAST of Carg03991 vs. TAIR 10
Match: AT1G75780.1 (tubulin beta-1 chain )

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-74
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 134

[Close]

BLAST of Carg03991 vs. TAIR 10
Match: AT1G20010.1 (tubulin beta-5 chain )

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-73
Identity = 124/135 (91.85%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIGSKFWEVICDEHGID+TG+Y+GD ++DLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 134

[Close]

BLAST of Carg03991 vs. TAIR 10
Match: AT5G12250.1 (beta-6 tubulin )

HSP 1 Score: 264.6 bits (675), Expect = 4.5e-71
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGID TG+Y G  +SDLQLER+NVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG--NSDLQLERVNVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

[Close]

BLAST of Carg03991 vs. TAIR 10
Match: AT5G62690.1 (tubulin beta chain 2 )

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-70
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD--SDLQLERINVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           +VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

[Close]

BLAST of Carg03991 vs. TAIR 10
Match: AT5G62700.1 (tubulin beta chain 3 )

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-70
Identity = 120/135 (88.89%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD--SDLQLERINVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           +VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQAY 136
           VVRKEAENCDCLQ +
Sbjct: 121 VVRKEAENCDCLQGF 133

The following BLAST results are available for this feature:

BLAST of Carg03991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020452.1	2.0e-81	100.00	Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962240.1	1.1e-74	98.52	tubulin beta chain-like [Cucurbita moschata] >XP_022996981.1 tubulin beta chain-...	[more]
XP_038885170.1	1.1e-74	98.52	tubulin beta chain-like [Benincasa hispida]	[more]
XP_008444814.1	1.1e-74	98.52	PREDICTED: tubulin beta chain [Cucumis melo] >KAA0065160.1 tubulin beta chain [C...	[more]
XP_023002345.1	1.1e-74	98.52	tubulin beta chain-like [Cucurbita maxima] >XP_023537875.1 tubulin beta chain-li...	[more]

BLAST of Carg03991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6VAF6	9.5e-74	93.33	Tubulin beta-6 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]
P12411	1.6e-73	94.07	Tubulin beta-1 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB1 PE=2 SV=1	[more]
Q40665	8.0e-73	93.33	Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2	[more]
Q6VAF7	8.0e-73	92.59	Tubulin beta-5 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]
P28551	2.3e-72	92.59	Tubulin beta chain (Fragment) OS=Glycine max OX=3847 GN=TUBB PE=2 SV=2	[more]

BLAST of Carg03991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K690	5.2e-75	98.52	Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111492047 PE=3 SV=1	[more]
A0A6J1KNN8	5.2e-75	98.52	Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111496210 PE=3 SV=1	[more]
A0A5A7VD89	5.2e-75	98.52	Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00...	[more]
A0A0A0LPG6	5.2e-75	98.52	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_2G368830 PE=3 SV=1	[more]
A0A6J1CRF9	5.2e-75	98.52	Tubulin beta chain OS=Momordica charantia OX=3673 GN=LOC111013906 PE=3 SV=1	[more]

BLAST of Carg03991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75780.1	1.1e-74	94.07	tubulin beta-1 chain	[more]
AT1G20010.1	1.7e-73	91.85	tubulin beta-5 chain	[more]
AT5G12250.1	4.5e-71	88.15	beta-6 tubulin	[more]
AT5G62690.1	2.2e-70	88.89	tubulin beta chain 2	[more]
AT5G62700.1	2.2e-70	88.89	tubulin beta chain 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 110..128 score: 87.58 coord: 43..60 score: 82.0 coord: 90..101 score: 94.76
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 95..106 score: 76.26 coord: 108..132 score: 70.19 coord: 10..30 score: 73.48 coord: 53..72 score: 68.16
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..135
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 1..136 e-value: 2.2E-62 score: 212.9
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..134
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..134 e-value: 1.3E-36 score: 126.7
None	No IPR available	PANTHER	PTHR11588:SF116	TUBULIN BETA-1 CHAIN-RELATED	coord: 1..135
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03991-RA	Carg03991-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton