Carg03984 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03984
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Sec-independent protein translocase protein TATC
Location	Carg_Chr12: 2404860 .. 2405429 (-)
RNA-Seq Expression	Carg03984
Synteny	Carg03984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTGTGAGATTCAGAGACCAATCTCTTGCCCCAAAGAAATCAAAATCAATTAAACGATGCAGAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGATGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA

mRNA sequence

ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTGTGAGATTCAGAGACCAATCTCTTGCCCCAAAGAAATCAAAATCAATTAAACGATGCAGAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGATGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA

Coding sequence (CDS)

ATGGAGGCGGTTTTGATTCCCCATAATTTCTCTCCGGCCGCCCCGGCTGTCACGTTTTATAGCCATCGCCGTCGCCATCGCCGTCGCCATCGCCGGCAACCGCCTCGCTTCCCTCTGCCCCGTCGTTCATTTCCCCCTTCAGCGGCGGAAGCCCAGCCGTCGTGCCGCCCAAAGGGTGTGAGATTCAGAGACCAATCTCTTGCCCCAAAGAAATCAAAATCAATTAAACGATGCAGAGAGCTGCCGGTTGAGATGACGGCGGAGGCTTTGATCGTTGATTCCACAAATCGAATGGGGCCGGAGCCGAGCCATGTTCCTAAAGATTTATGGGTCGTTTTAGGATTACGTTTGCCGCCGCCGTCGCCACCGCCCTGGGAAGGTAGCAGGAGTTTGGGGGTGGCGGCAGAGATTGAATTTTCTGGTTCGGCGTTTAACGTTTCGCCGCCGCCGAGTAGCGTGCCGCTTCCGAATTTCCCTCTGATGCGGAAGATGAATTGTAATGTACAGGCCGCTGCCGGAATTGACGCCGGAGCCACCGACAATCTCCGGCGACTTCTACGCCTCCGATGA

Protein sequence

MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATDNLRRLLRLR

Homology

[Close]

BLAST of Carg03984 vs. NCBI nr
Match: KAG7020445.1 (hypothetical protein SDJN02_17129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.6 bits (976), Expect = 8.1e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
           SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD
Sbjct: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 189

[Close]

BLAST of Carg03984 vs. NCBI nr
Match: XP_023538239.1 (uncharacterized protein LOC111799074 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.2 bits (944), Expect = 4.1e-98
Identity = 182/189 (96.30%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFP PRRSFPPSAAE+QPSCRPKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPFPRRSFPPSAAESQPSCRPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKK KSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKPKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
            PPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNF LMRK+NCNV+AAAGIDAGATD
Sbjct: 121 LPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFSLMRKLNCNVEAAAGIDAGATD 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 189

[Close]

BLAST of Carg03984 vs. NCBI nr
Match: XP_022951686.1 (uncharacterized protein LOC111454434 [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 4.0e-93
Identity = 180/189 (95.24%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYS    HRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYS----HRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDL VVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLCVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
           S PP EGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK+NCNV+AAAGIDAGATD
Sbjct: 121 SSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVEAAAGIDAGATD 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 185

[Close]

BLAST of Carg03984 vs. NCBI nr
Match: XP_023002514.1 (uncharacterized protein LOC111496332 [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 1.9e-90
Identity = 173/189 (91.53%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYS    HRRRHRRQPPRFPLPRRSFPPS AEAQPSC PKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYS----HRRRHRRQPPRFPLPRRSFPPSEAEAQPSCGPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNR+GPEPSHVPKDLWVVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRLGPEPSHVPKDLWVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
            P PWE SRSLGVAAEIEFSGSAF+VSPPPSSVPLPNF LMRK+NCNV+AAAGID GAT+
Sbjct: 121 PPRPWEDSRSLGVAAEIEFSGSAFSVSPPPSSVPLPNFSLMRKLNCNVEAAAGIDTGATN 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 185

[Close]

BLAST of Carg03984 vs. NCBI nr
Match: KAG6585532.1 (hypothetical protein SDJN03_18265, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-54
Identity = 131/196 (66.84%), Postives = 135/196 (68.88%), Query Frame = 0


Query: 1   MEAVLIPHNFSP-------AAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQP 60
           MEAVLIPHNFS         A AV        +R         FPL RR           
Sbjct: 1   MEAVLIPHNFSRPPRLSRFIAIAVAIAVAIAGNRLASLCPVVHFPLQRR----------- 60

Query: 61  SCRPKGVRFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120
                           K S+   +  ELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL
Sbjct: 61  ----------------KPSRRAAQRVELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVL 120

Query: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAG 180
           GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK+NCNVQAAAG
Sbjct: 121 GLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVQAAAG 169

Query: 181 IDAGATDNLRRLLRLR 190
           IDAGATDNLRRLLRLR
Sbjct: 181 IDAGATDNLRRLLRLR 169

[Close]

BLAST of Carg03984 vs. ExPASy TrEMBL
Match: A0A6J1GI76 (uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC111454434 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 180/189 (95.24%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYS    HRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYS----HRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDL VVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLCVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
           S PP EGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK+NCNV+AAAGIDAGATD
Sbjct: 121 SSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKLNCNVEAAAGIDAGATD 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 185

[Close]

BLAST of Carg03984 vs. ExPASy TrEMBL
Match: A0A6J1KQN3 (uncharacterized protein LOC111496332 OS=Cucurbita maxima OX=3661 GN=LOC111496332 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.0e-91
Identity = 173/189 (91.53%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MEAVLIPHNFSPAAPAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 60
           MEAVLIPHNFSPAAPAVTFYS    HRRRHRRQPPRFPLPRRSFPPS AEAQPSC PKGV
Sbjct: 1   MEAVLIPHNFSPAAPAVTFYS----HRRRHRRQPPRFPLPRRSFPPSEAEAQPSCGPKGV 60

Query: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGLRLPPP 120
           RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNR+GPEPSHVPKDLWVVLGLRLPPP
Sbjct: 61  RFRDQSLAPKKSKSIKRCRELPVEMTAEALIVDSTNRLGPEPSHVPKDLWVVLGLRLPPP 120

Query: 121 SPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATD 180
            P PWE SRSLGVAAEIEFSGSAF+VSPPPSSVPLPNF LMRK+NCNV+AAAGID GAT+
Sbjct: 121 PPRPWEDSRSLGVAAEIEFSGSAFSVSPPPSSVPLPNFSLMRKLNCNVEAAAGIDTGATN 180

Query: 181 NLRRLLRLR 190
           NLRRLLRLR
Sbjct: 181 NLRRLLRLR 185

[Close]

BLAST of Carg03984 vs. ExPASy TrEMBL
Match: A0A6J1KEH8 (uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.3e-52
Identity = 130/211 (61.61%), Postives = 142/211 (67.30%), Query Frame = 0


Query: 1   MEAVLIP-----------HNFSPAA----------PAVTFYSHRRRHRRRHRRQPPRFPL 60
           MEAVLIP            NFSPA           PAV  YSH      RH +QPP  PL
Sbjct: 1   MEAVLIPFSAERSRSLKSRNFSPATVHDGVLNIPPPAVPNYSH------RHHQQPPLLPL 60

Query: 61  PRRSFPPSAAEAQPSCRPKGVRFRDQSLAPKKSKSIKRCRELP-VEMTAEALIVDSTNRM 120
           P R FPP+A    PSCRPKG + RDQSL PKKSK IKR R  P ++ TAE +IVDSTNR+
Sbjct: 61  PGRPFPPTAVGVPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRL 120

Query: 121 GPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNF 180
           GPEPSHVPKDLW VLGLR    S PP EG RS     E EFSGSAF VSPPPSSVPLP F
Sbjct: 121 GPEPSHVPKDLWRVLGLR---SSAPPREGGRSF----ETEFSGSAFGVSPPPSSVPLPKF 180

Query: 181 PLMRKMNCNVQAAAGIDAGATDNLRRLLRLR 190
            L R+++CNV+ AAG+DAGATDNLRRLLRLR
Sbjct: 181 TLRREVSCNVE-AAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of Carg03984 vs. ExPASy TrEMBL
Match: A0A6J1HFM4 (uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC111463019 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.3e-52
Identity = 130/211 (61.61%), Postives = 141/211 (66.82%), Query Frame = 0


Query: 1   MEAVLIP-----------HNFSPAA----------PAVTFYSHRRRHRRRHRRQPPRFPL 60
           ME VLIP            NF PA           PAV  YSHR       R+QPP  PL
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRL------RQQPPLLPL 60

Query: 61  PRRSFPPSAAEAQPSCRPKGVRFRDQSLAPKKSKSIKRCRELP-VEMTAEALIVDSTNRM 120
           PRR FPP+A  A PSCRPKG + RDQSL PKKSK IKR R  P ++ TAE +IVDSTNR+
Sbjct: 61  PRRPFPPTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRL 120

Query: 121 GPEPSHVPKDLWVVLGLRLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNF 180
           GPEPSHVPKDLW VLGLR    S PP EG R      E EFSGSAF VSPPPSSVPLP F
Sbjct: 121 GPEPSHVPKDLWRVLGLR---SSAPPREGGRRF----ETEFSGSAFGVSPPPSSVPLPKF 180

Query: 181 PLMRKMNCNVQAAAGIDAGATDNLRRLLRLR 190
            L R+M+CNV+ AAG+DAGATDNLRRLLRLR
Sbjct: 181 TLRREMSCNVE-AAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of Carg03984 vs. ExPASy TrEMBL
Match: A0A0A0LN70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.7e-44
Identity = 114/195 (58.46%), Postives = 132/195 (67.69%), Query Frame = 0


Query: 7   PHNFSPA----------APAVTFYSHRRRHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCR 66
           P NFSPA           P +++ S R+       +QPP  PLPRR  PPS   A  S R
Sbjct: 18  PQNFSPANVHGGFLNFPLPGISYNSCRQ------HQQPPLLPLPRRPLPPSEIGATVSSR 77

Query: 67  PKGVRFRDQSLAPKKSKSIKRCRELP-VEMTAEALIVDSTNRMGPEPSHVPKDLWVVLGL 126
           PK + FRDQSL PKKSK IKR R  P  + T E +IVDSTNR+GPEPSHVPKDL  +LGL
Sbjct: 78  PKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSHVPKDLLTLLGL 137

Query: 127 RLPPPSPPPWEGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK-MNCNVQAAAGI 186
           R   PS P  E +RS   AAEIEFSGSA++ SPPPSSVPLP F L RK + CNV+ A+G+
Sbjct: 138 R---PSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGCNVE-ASGV 197

Query: 187 DAGATDNLRRLLRLR 190
           DAGATDNLRRLLR+R
Sbjct: 198 DAGATDNLRRLLRIR 202

[Close]

BLAST of Carg03984 vs. TAIR 10
Match: AT1G20070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-07
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 146 VSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATDNLRRLLRLR 190
           +SPPPSS+P+P F +  K+ CNV+AA   D  AT+N+RR+L+LR
Sbjct: 151 LSPPPSSLPMPRFSIKPKLRCNVEAAGKSDV-ATNNIRRVLQLR 193

[Close]

BLAST of Carg03984 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.9e-04
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 133 VAAEIEFSGSA-FNVSPPPSSVPLPNFPLMRKMNCNVQAAAGIDAGATDNLRRLLRLR 190
           V+A+  ++GS+ F VSP PSS+PLP+F   +K   +      ID  A+ +LRRLLRL+
Sbjct: 80  VSADDIYAGSSIFAVSPAPSSLPLPSF--SKKKAKSQVVVVSIDDSASQDLRRLLRLK 135

The following BLAST results are available for this feature:

BLAST of Carg03984 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020445.1	8.1e-102	100.00	hypothetical protein SDJN02_17129, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023538239.1	4.1e-98	96.30	uncharacterized protein LOC111799074 [Cucurbita pepo subsp. pepo]	[more]
XP_022951686.1	4.0e-93	95.24	uncharacterized protein LOC111454434 [Cucurbita moschata]	[more]
XP_023002514.1	1.9e-90	91.53	uncharacterized protein LOC111496332 [Cucurbita maxima]	[more]
KAG6585532.1	1.7e-54	66.84	hypothetical protein SDJN03_18265, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg03984 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GI76	1.9e-93	95.24	uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC1114544...	[more]
A0A6J1KQN3	9.0e-91	91.53	uncharacterized protein LOC111496332 OS=Cucurbita maxima OX=3661 GN=LOC111496332...	[more]
A0A6J1KEH8	1.3e-52	61.61	uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508...	[more]
A0A6J1HFM4	6.3e-52	61.61	uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A0A0LN70	3.7e-44	58.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1	[more]

BLAST of Carg03984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20070.1	6.1e-07	54.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G21570.1	4.9e-04	44.83	unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF15365	PNRC	coord: 139..158 e-value: 7.4E-5 score: 22.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..58
None	No IPR available	PANTHER	PTHR33670:SF14	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 10..189
None	No IPR available	PANTHER	PTHR33670	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 10..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03984-RA	Carg03984-RA	mRNA