Carg03980 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03980
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Expansin
Location	Carg_Chr12: 2376033 .. 2378371 (-)
RNA-Seq Expression	Carg03980
Synteny	Carg03980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGTAAGTAAACGACTTTGTTTCGTAATGTTTCTGTTTCTTGTTTTTTGTAAATTTTTTTAGTTGAATATATGTTTGATAATTATTTGTAGTCTTAAAATCGAAGTTTAAAAATTAAAAATTTACGTGAAAATTGAATTTTCCCTTTTCCAATCGATGTGGGACCCCCCAATCCATCTTCTTTCGAGGCCAACGTCCTTGCTGGAATACCGCCTTCTATCCACCTCCTTTGGGGGCTCAGTTTCCTTACTGGCACATCGCCTTGTGTCCACTTCCCTTTGGAGCTTAGTCTCCTTGCTGGCACATCACCTTGTGTCCACCTCCCTTTAGAACTCAATCTGGCACAACCTTGTGACCACCTGTCCAGTTTCCTTCTAGCCAGCATTCTTGTTGGCACATCGCCTCATGTCCACATTCTTTTAGGGCTCAGCCACTTGGCACGCAACCTTGTGCCTACAGCCTTTTGGGGTAGGGGCTCAACCTCGTTGCTGGTACACATTCTTGTGTCTACCTCCTTTTGGGGCTCAGCCTCATTGCTGGCAAATTGACTGGTGTTTGGACTCTAATACCATTTGTAAAAGTCAAAGCCCACCGTAGCAAATATGATTCATTTTGGGTTTCCCTTTCGGGTTGTGTCGGTAAGTTTTTAGAACTTGTCTATTCCGGATAGGCTTCCACAACCTTATAAATAATGTTTTGTTCTCCTCCCCCAGTTAATATGGGATCTCACCAGTAACATTCCAACATCCACATGTAACTATTATTTAAATATTTTTTAAAAAATTAATAGATAATTTATATTTTTCACCCTAATAAATTTAATAATATTTAGTAAATAAAAAATATAATATTATAATCCTAATTTTAAAAATTAATTTTAATATTAAAAAATAAGCAAATAAATATATATAATATAACAAATTTTATTAGCTGGTTCACTGATTTTATCGCCGGCCAAACCATGTTGTTGACCGTTGCAGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGGTGCAACCCTCCGCTTAAGCACTTCGACATGGCCCAACCCGCTTGGGAAAAGATCGGCATTTATCGAGGCGGAATCATCCCCGTCCTCTACCAAAGGTAACAAAAAAAAAAAATCATATTTTATCGTAAATTATAATTTACCATATATATCATATTTGACCCATTATTACCGTCAAATATCTCGTATGATTGAAGATATTTAGCCTTACCATAGGTATCATATTTGTACAAATATCTTGTATGATCGAGATATTTAGCATTTCATTACGATTTACTATAGGTATCGTATTTGTCATTTGATTAGAGGTATACATCTCGTATGATTGAGATATTTAGTCTTCCATTACGGTTTATCATAGGTATCATATTTGTATAAATATCTTGTATGATTGAGATATTTAGTCTTTCATTACGGTTTACCATAAATATCATATTTGTCATTTGCTGATATTTATATAATTGAGATATTTAGCTTTTCACGACCGTTTATTATAGTATCATATTTGTCATCTAATTATAGGCAAATATCTAGAATCATTCGGATATTTAGTTTCTATTATGGTTTACTATAACTATTCATTTGATTGCTCTTTTCATTTTCTTTATAATTTATTTGATTTTATAAATGATTATAAATAGAGAATTTCACGGTCCTTATTTGAACTGACGGATTAAATTCTACAGAGTTCCTTGTGTAAAGAAAGGAGGGGTGAGGTTCACAGTGAACGGACGAGACTATTTTGAGCTGGTTTTGATAAGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

mRNA sequence

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

Coding sequence (CDS)

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

Protein sequence

MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGGCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGSSVQFS

Homology

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BLAST of Carg03980 vs. NCBI nr
Match: KAG7020441.1 (Expansin-A1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409.5 bits (1051), Expect = 1.7e-110
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 GCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFN 180
           GCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFN
Sbjct: 121 GCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFN 180

Query: 181 NVVPSSWRFGQTFGSSVQFS 201
           NVVPSSWRFGQTFGSSVQFS
Sbjct: 181 NVVPSSWRFGQTFGSSVQFS 200

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BLAST of Carg03980 vs. NCBI nr
Match: KAG6585527.1 (Expansin-A11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.9 bits (969), Expect = 5.5e-101
Identity = 198/257 (77.04%), Postives = 198/257 (77.04%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKLSFVFAFSLVLCNFLFA DAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLSFVFAFSLVLCNFLFAVDAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 240

[Close]

BLAST of Carg03980 vs. NCBI nr
Match: XP_022951087.1 (expansin-A11-like [Cucurbita moschata])

HSP 1 Score: 374.4 bits (960), Expect = 6.1e-100
Identity = 196/257 (76.26%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKLSF FAFSLVLCNFLFAAD FSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLSFAFAFSLVLCNFLFAADGFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 240

[Close]

BLAST of Carg03980 vs. NCBI nr
Match: XP_023538192.1 (expansin-A11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 194/257 (75.49%), Postives = 195/257 (75.88%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAK SF FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKHSFAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQ LSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVV 240

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BLAST of Carg03980 vs. NCBI nr
Match: XP_023002477.1 (expansin-A11-like [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 5.7e-98
Identity = 193/257 (75.10%), Postives = 195/257 (75.88%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKL F FAFSLVLCNFL AADAF+ASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLPFAFAFSLVLCNFLSAADAFTASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQ LSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVV 240

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BLAST of Carg03980 vs. ExPASy Swiss-Prot
Match: Q9LNU3 (Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.9e-68
Identity = 140/244 (57.38%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 13  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALF 72
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 73  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG----------- 132
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG           
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDM 129

Query: 133 ------------------------C----------------------NVGGAGDIQAVSI 192
                                   C                      NVGGAG I++VSI
Sbjct: 130 AQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSI 189

Query: 193 KGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGS 200
           KGSK+  W+AMSRNWG NWQSN+YL+GQ LSF +TTTDG T+VF NVVPSSW FGQ + S
Sbjct: 190 KGSKTG-WLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYSS 249

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BLAST of Carg03980 vs. ExPASy Swiss-Prot
Match: Q7XWU8 (Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 134/250 (53.60%), Postives = 156/250 (62.40%), Query Frame = 0


Query: 8   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAAL 67
           F   L  C     A +F+ASGW  A ATFYGGSDASGTMGGACGYG+LY TGYGTNTAAL
Sbjct: 13  FLALLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAAL 72

Query: 68  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG------ 127
           ST LFNDGASCGQC +I CDY+ D R+C+ G SVT+TATN CPPN+ALPN+ GG      
Sbjct: 73  STVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPR 132

Query: 128 ---------------------------------------------------CNVGGAGDI 187
                                                               NVGG G I
Sbjct: 133 QHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSI 192

Query: 188 QAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFG 201
           Q+VSIKGS++  WMAMSRNWG+NWQSN+YL+GQ+LSFKVT++DGQT  F +V P+ W FG
Sbjct: 193 QSVSIKGSRTG-WMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFG 252

[Close]

BLAST of Carg03980 vs. ExPASy Swiss-Prot
Match: Q4PR39 (Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 238.0 bits (606), Expect = 9.0e-62
Identity = 135/262 (51.53%), Postives = 158/262 (60.31%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAA-----DAFSASGWYPAHATFYGGSDASGTMGGACGYGNL 60
           MA+   VFA    +   L AA     +AF+ASGW    ATFYGGSDASGTMGGACGYGNL
Sbjct: 1   MARRGHVFAVVAFVSYALLAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNL 60

Query: 61  YDTGYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFAL 120
           Y  GYGT TAALSTALF+DGASCGQC  +TCD + DPRWC  GASVTVTATNFCPPN+AL
Sbjct: 61  YTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYAL 120

Query: 121 PNNNGG------------------------------------------------------ 180
           P+++GG                                                      
Sbjct: 121 PSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFEL 180

Query: 181 ---CNVGGAGDIQAVSIKGS-KSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQ 200
               NV  AG ++++ ++GS + + WMAMSRNWG NWQS +YL+GQ LSF+VT TDGQT 
Sbjct: 181 VLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTI 240

[Close]

BLAST of Carg03980 vs. ExPASy Swiss-Prot
Match: Q4PR52 (Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-60
Identity = 123/234 (52.56%), Postives = 139/234 (59.40%), Query Frame = 0


Query: 23  AFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCI 82
           A   SGW  AHATFYGG+DASGTMGGACGYGNLY  GYGT TAALSTALFNDG +CGQC 
Sbjct: 28  ALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCY 87

Query: 83  KITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG--------------------- 142
           K+ CD KTD  WC  G SVT+TATNFCPPN+ LP+++GG                     
Sbjct: 88  KLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGI 147

Query: 143 ------------------------------------CNVGGAGDIQAVSIKGSKSSQWMA 200
                                                NVG AG I+A+ +KGSKS  WMA
Sbjct: 148 YRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMA 207

[Close]

BLAST of Carg03980 vs. ExPASy Swiss-Prot
Match: Q4PR51 (Expansin-A14 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-59
Identity = 124/249 (49.80%), Postives = 142/249 (57.03%), Query Frame = 0


Query: 8   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAAL 67
           FA + V C  L  AD  +   W  AHATFYGG+DASGTMGG CGYG+LY  GYGT  AAL
Sbjct: 13  FAIAAVGCTQLTTADDAAPPVWQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAAL 72

Query: 68  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG------ 127
           STALFNDGASCGQC KI CD K  P+WC  G +VT+TATNFCPPN+ LP++NGG      
Sbjct: 73  STALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPR 132

Query: 128 ---------------------------------------------------CNVGGAGDI 187
                                                               NV   G I
Sbjct: 133 PHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSI 192

Query: 188 QAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFG 200
           +++ I GS S+ WM M RNWG NW S SYL GQTLSF+VT  DGQT VF N+VPS W+FG
Sbjct: 193 KSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFG 252

[Close]

BLAST of Carg03980 vs. ExPASy TrEMBL
Match: A0A6J1GGP4 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111454041 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.0e-100
Identity = 196/257 (76.26%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKLSF FAFSLVLCNFLFAAD FSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLSFAFAFSLVLCNFLFAADGFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 240

[Close]

BLAST of Carg03980 vs. ExPASy TrEMBL
Match: A0A6J1KJM1 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111496302 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.8e-98
Identity = 193/257 (75.10%), Postives = 195/257 (75.88%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKL F FAFSLVLCNFL AADAF+ASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLPFAFAFSLVLCNFLSAADAFTASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQ LSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVV 240

[Close]

BLAST of Carg03980 vs. ExPASy TrEMBL
Match: A0A6J1KEE6 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111492486 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.6e-84
Identity = 168/258 (65.12%), Postives = 180/258 (69.77%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCN-FLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           MAKL  +FAFSL L N F+F+ +AF+ SGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLPLIFAFSLALSNFFIFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVTVTATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLIS 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAG IQ+VSIKGSKS  W  MSRNWG NWQSNSYLNGQ+LSFK+TT+DGQT+VFNNV
Sbjct: 181 NVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNV 240

[Close]

BLAST of Carg03980 vs. ExPASy TrEMBL
Match: A0A6J1HFB2 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111462523 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83
Identity = 167/258 (64.73%), Postives = 179/258 (69.38%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCN-FLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           MAKL  +FAFSL L + F F+ +AF+ SGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVTVTATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLIS 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAG IQ+VSIKGSKS  W  MSRNWG NWQSNSYLNGQ+LSFK+TT+DGQT+VFNNV
Sbjct: 181 NVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNV 240

[Close]

BLAST of Carg03980 vs. ExPASy TrEMBL
Match: Q39626 (Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.3e-83
Identity = 168/258 (65.12%), Postives = 177/258 (68.60%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           M KL F FAF L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLIT 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAGDI++VSIKGSKSS W  MSRNWG NWQSNSYLNGQ+LSFKVTT+DGQ QVFNNV
Sbjct: 181 NVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQVQVFNNV 240

[Close]

BLAST of Carg03980 vs. TAIR 10
Match: AT1G20190.1 (expansin 11 )

HSP 1 Score: 258.8 bits (660), Expect = 3.5e-69
Identity = 140/244 (57.38%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 13  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALF 72
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 73  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG----------- 132
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG           
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDM 129

Query: 133 ------------------------C----------------------NVGGAGDIQAVSI 192
                                   C                      NVGGAG I++VSI
Sbjct: 130 AQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSI 189

Query: 193 KGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGS 200
           KGSK+  W+AMSRNWG NWQSN+YL+GQ LSF +TTTDG T+VF NVVPSSW FGQ + S
Sbjct: 190 KGSKTG-WLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYSS 249

[Close]

BLAST of Carg03980 vs. TAIR 10
Match: AT2G40610.1 (expansin A8 )

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 118/223 (52.91%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 28  GWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCIKITCD 87
           GW   HATFYGG DASGTMGGACGYGNLY  GYGTNTAALSTALFN+G +CG C ++ C+
Sbjct: 29  GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCN 88

Query: 88  YKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG-------------------------- 147
              DPRWC+ G+++TVTATNFCPPN  L N+NGG                          
Sbjct: 89  --DDPRWCL-GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGI 148

Query: 148 -------------------------------CNVGGAGDIQAVSIKGSKSSQWMAMSRNW 194
                                           NVGGAGD+ AVSIKGSK+  W AMSRNW
Sbjct: 149 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNW 208

[Close]

BLAST of Carg03980 vs. TAIR 10
Match: AT4G01630.1 (expansin A17 )

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 122/251 (48.61%), Postives = 146/251 (58.17%), Query Frame = 0


Query: 6   FVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTA 65
           F    +++     F   +  ++GW  AHATFYGGSDASGTMGGACGYGNLY  GY TNTA
Sbjct: 5   FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query: 66  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG---- 125
           ALSTALFNDG SCG C +I CD    P+WC+KG S+T+TATNFCPPNFA  ++NGG    
Sbjct: 65  ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNP 124

Query: 126 -----------------------------------------------------CNVGGAG 185
                                                                 NV G G
Sbjct: 125 PRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGG 184

Query: 186 DIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWR 200
           +I  V IKGSKS++W  MSRNWG N+QSN+YLNGQ+LSFKV  +DG  +   NVVPS+WR
Sbjct: 185 EISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWR 244

[Close]

BLAST of Carg03980 vs. TAIR 10
Match: AT1G69530.4 (expansin A1 )

HSP 1 Score: 221.9 bits (564), Expect = 4.7e-58
Identity = 126/253 (49.80%), Postives = 146/253 (57.71%), Query Frame = 0


Query: 12  LVLCNFLFAA---------DAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGT 71
           + L  FLF A         + ++  GW  AHATFYGG DASGTMGGACGYGNLY  GYGT
Sbjct: 1   MALVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 60

Query: 72  NTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG- 131
           NTAALSTALFN+G SCG C +I C  + D +WC+ G S+ VTATNFCPPN ALPNN GG 
Sbjct: 61  NTAALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGGW 120

Query: 132 --------------------------------------------------------CNVG 191
                                                                    NVG
Sbjct: 121 CNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVG 180

Query: 192 GAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPS 199
           GAGD+ +  +KGS++  W AMSRNWG NWQSNSYLNGQ+LSFKVTT+DGQT V NNV  +
Sbjct: 181 GAGDVHSAMVKGSRTG-WQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANA 240

[Close]

BLAST of Carg03980 vs. TAIR 10
Match: AT1G69530.1 (expansin A1 )

HSP 1 Score: 220.3 bits (560), Expect = 1.4e-57
Identity = 125/248 (50.40%), Postives = 143/248 (57.66%), Query Frame = 0


Query: 12  LVLCNFLFAA---------DAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGT 71
           + L  FLF A         + ++  GW  AHATFYGG DASGTMGGACGYGNLY  GYGT
Sbjct: 1   MALVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 60

Query: 72  NTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG- 131
           NTAALSTALFN+G SCG C +I C  + D +WC+ G S+ VTATNFCPPN ALPNN GG 
Sbjct: 61  NTAALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGGW 120

Query: 132 --------------------------------------------------------CNVG 191
                                                                    NVG
Sbjct: 121 CNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVG 180

Query: 192 GAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPS 194
           GAGD+ +  +KGS++  W AMSRNWG NWQSNSYLNGQ+LSFKVTT+DGQT V NNV  +
Sbjct: 181 GAGDVHSAMVKGSRTG-WQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANA 240

The following BLAST results are available for this feature:

BLAST of Carg03980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020441.1	1.7e-110	100.00	Expansin-A1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6585527.1	5.5e-101	77.04	Expansin-A11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022951087.1	6.1e-100	76.26	expansin-A11-like [Cucurbita moschata]	[more]
XP_023538192.1	2.0e-98	75.49	expansin-A11-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002477.1	5.7e-98	75.10	expansin-A11-like [Cucurbita maxima]	[more]

BLAST of Carg03980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNU3	4.9e-68	57.38	Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1	[more]
Q7XWU8	1.9e-64	53.60	Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2	[more]
Q4PR39	9.0e-62	51.53	Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2	[more]
Q4PR52	4.9e-60	52.56	Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2	[more]
Q4PR51	5.4e-59	49.80	Expansin-A14 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA14 PE=2 SV=2	[more]

BLAST of Carg03980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGP4	3.0e-100	76.26	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111454041 PE=3 SV=1	[more]
A0A6J1KJM1	2.8e-98	75.10	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111496302 PE=3 SV=1	[more]
A0A6J1KEE6	6.6e-84	65.12	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111492486 PE=3 SV=1	[more]
A0A6J1HFB2	4.3e-83	64.73	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111462523 PE=3 SV=1	[more]
Q39626	7.3e-83	65.12	Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1	[more]

BLAST of Carg03980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20190.1	3.5e-69	57.38	expansin 11	[more]
AT2G40610.1	1.6e-58	52.91	expansin A8	[more]
AT4G01630.1	1.6e-58	48.61	expansin A17	[more]
AT1G69530.4	4.7e-58	49.80	expansin A1	[more]
AT1G69530.1	1.4e-57	50.40	expansin A1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 59..73 score: 92.22 coord: 88..99 score: 40.83 coord: 101..111 score: 82.12
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 68..86 score: 60.79 coord: 28..43 score: 68.28 coord: 46..64 score: 73.42
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 64..148 e-value: 5.1E-21 score: 85.8
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 47..123 score: 19.875803
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 18..194 e-value: 4.0E-31 score: 109.9
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 14..126
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Expansin_C	coord: 123..184 e-value: 1.4E-23 score: 82.7
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 123..195 score: 21.704206
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 64..111 e-value: 2.0E-11 score: 44.0
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 8..122
None	No IPR available	PANTHER	PTHR31867:SF154	EXPANSIN	coord: 122..199
None	No IPR available	PANTHER	PTHR31867:SF154	EXPANSIN	coord: 8..122
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 122..199
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 123..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03980-RA	Carg03980-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region