Carg03877 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGGTAAGATTTTTTGGTTCCATTTCTTGCTTGGAAATGAATCGAAAATTGGTTCGATTAATTTGAAGTTCATGTTTCTAGGGTTTGAAGTTTCCTAGAAATCTGTAATAGTTCAAGCCTATCGCTAGCAGACATTGTCCTCTTCAGACTATCTCTTTCGGGCTTCCTCTCTCAAAGTTTTTCGTTCTCCTCTCCAATCGATGTGGAATCTCACAATCCATCTTCATTCGAGTCCTGTGTCATTGCTCTAGATTTTTAAAATGTGTTTACTAGAGAGAGGTTCTCTACGCATTGTTAGACGAACACGATTCTACACAATGGTATGATGATTTTGTCCACTTTGGGTGTAAGCTCTCATGGTTTTGCTTCCCAAAATGCTTCAATACCAATGGAGAGAGTATTCTTTGTTTATAAACCCATAATCATTCCCTAAATTTCCATCATCCAACACCTCCCCTTAATCGAGACTAAATTCCTTTAGAGTCATAGTCATTTTTTAGCCTTCAAAGAGGGGCTCGACTCCGATACCATTTTAGACGAACATGACTCTCCACAATATTGTGATATTGTCCACTTTGAGTGTAAGCTCTCGTGACTTTGTTTTGGGCATGCCTCGTACCAATGGATAGAGTATTCTTTGTTTATAAATCTATGATCATTCCCTAAATTAGCCGATGTAGGACTTCTATAATCCAATACACATAAAACGTTTTGTTCTCCCTCCAACTGATGTGGGACTTCACAATCCACCCCCATTTGGGGCCAGCGCCATCACTAGCACTCATTCCGCTCTCCAATCGATGGAATCTCACAATCCATCTCCTTCGAATTCCAATCCTCATTGGCTCTCGTTCCACTCTCCAATGGATGGAATCTCACCATCCATCTCCTTCAAGGTCCAGCATCCTCACCAACACTTATTATGCTCTCCAATCAACGTGGAATCTCATAATCCACTCGCTTTGACACCGCGTAGAGCGTGTTGGGCTCTGATTAAAGTAAGGGGCAATTGTTCCTCTTTGTTCTTGCATTTGCCTCTGCTTTTTGCAATGGAACTTCTAATGAATGAAAAGGAAAAGCACATTAGAAACATAGTGATTCTTTTTTCTTTCACATGTCATGTGCAGTGTTTGTTTTGTGACATTTTCCCCATTTTTTTGTTTGTTCCCTTTGTAGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGGTAATCTTTTGACTTCTTCAACTCTTACATGCTATGCTTAATAAAAAAACAATTAATTTGGGTTCTTTATTTTGGTAACCAAGCAGATTGTTCTTCGTTTTTCCTTCCATCTTGTAGAAGGTGGTGTAGGTTTTACTTTCCAAGCATAATGCTTTACTTTTTTAAGCTCTCATGTTCTCTGCTGGGTAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAAGTTAGAATTTGCACTCGGGAATCATTGATTAACTTTGAACTTTTAGGTTAGAGAAACATCGCAGGTATCAATGTATTCCATGATCAGATTACTGGACACACTGACCCATATCTCTACAATGATATGATATTATTCACTTTGATAAATTTCCATAACCTCTCCTTTCCTTACAAGAATGCTATCAATCCCCGAGAATATTGTGAAGGAAACTTAAAAGTATATGAAAGAAATTGATGTTGTTTTTCCCTCTTCTCATTTTGTTTTAATAATTATGCAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGTAATCCTTTTATTTATTATTACTTTCTTGGAACAACCTTCAACTGTCTAGAAGTTTCCCATTTATTCTGATAAGTTCACACATAACCTCATTGCAACAATACTCGTTAGACAAGATCAATAAAGTCCCATATAACATCATCATACGTTGCGTCGTGTTAGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG ATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG Homology
BLAST of Carg03877 vs. NCBI nr
Match: KAG7020338.1 (hypothetical protein SDJN02_17022 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of Carg03877 vs. NCBI nr
Match: XP_023536837.1 (selenoprotein H-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 312.0 bits (798), Expect = 3.8e-81 Identity = 172/204 (84.31%), Postives = 173/204 (84.80%), Query Frame = 0
BLAST of Carg03877 vs. NCBI nr
Match: XP_022950994.1 (selenoprotein H-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 311.2 bits (796), Expect = 6.5e-81 Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0
BLAST of Carg03877 vs. NCBI nr
Match: XP_023002520.1 (selenoprotein H-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79 Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0
BLAST of Carg03877 vs. NCBI nr
Match: KAG6585418.1 (Fasciclin-like arabinogalactan protein 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 300.1 bits (767), Expect = 1.5e-77 Identity = 165/193 (85.49%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1GHF7 (selenoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE=4 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 3.1e-81 Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0
BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1KP64 (selenoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 7.7e-80 Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0
BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1GHC6 (selenoprotein H-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 8.3e-66 Identity = 145/177 (81.92%), Postives = 145/177 (81.92%), Query Frame = 0
BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1KLJ2 (uncharacterized protein LOC111496337 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 9.2e-65 Identity = 144/177 (81.36%), Postives = 145/177 (81.92%), Query Frame = 0
BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1K9R2 (selenoprotein H-like OS=Cucurbita maxima OX=3661 GN=LOC111492377 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.9e-62 Identity = 141/207 (68.12%), Postives = 157/207 (75.85%), Query Frame = 0
BLAST of Carg03877 vs. TAIR 10
Match: AT2G24440.1 (selenium binding ) HSP 1 Score: 132.1 bits (331), Expect = 5.0e-31 Identity = 88/196 (44.90%), Postives = 111/196 (56.63%), Query Frame = 0
BLAST of Carg03877 vs. TAIR 10
Match: AT4G31360.1 (selenium binding ) HSP 1 Score: 128.6 bits (322), Expect = 5.6e-30 Identity = 94/217 (43.32%), Postives = 115/217 (53.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|