Carg03877 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03877
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionselenoprotein H-like
LocationCarg_Chr12: 1791766 .. 1794452 (+)
RNA-Seq ExpressionCarg03877
SyntenyCarg03877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGGTAAGATTTTTTGGTTCCATTTCTTGCTTGGAAATGAATCGAAAATTGGTTCGATTAATTTGAAGTTCATGTTTCTAGGGTTTGAAGTTTCCTAGAAATCTGTAATAGTTCAAGCCTATCGCTAGCAGACATTGTCCTCTTCAGACTATCTCTTTCGGGCTTCCTCTCTCAAAGTTTTTCGTTCTCCTCTCCAATCGATGTGGAATCTCACAATCCATCTTCATTCGAGTCCTGTGTCATTGCTCTAGATTTTTAAAATGTGTTTACTAGAGAGAGGTTCTCTACGCATTGTTAGACGAACACGATTCTACACAATGGTATGATGATTTTGTCCACTTTGGGTGTAAGCTCTCATGGTTTTGCTTCCCAAAATGCTTCAATACCAATGGAGAGAGTATTCTTTGTTTATAAACCCATAATCATTCCCTAAATTTCCATCATCCAACACCTCCCCTTAATCGAGACTAAATTCCTTTAGAGTCATAGTCATTTTTTAGCCTTCAAAGAGGGGCTCGACTCCGATACCATTTTAGACGAACATGACTCTCCACAATATTGTGATATTGTCCACTTTGAGTGTAAGCTCTCGTGACTTTGTTTTGGGCATGCCTCGTACCAATGGATAGAGTATTCTTTGTTTATAAATCTATGATCATTCCCTAAATTAGCCGATGTAGGACTTCTATAATCCAATACACATAAAACGTTTTGTTCTCCCTCCAACTGATGTGGGACTTCACAATCCACCCCCATTTGGGGCCAGCGCCATCACTAGCACTCATTCCGCTCTCCAATCGATGGAATCTCACAATCCATCTCCTTCGAATTCCAATCCTCATTGGCTCTCGTTCCACTCTCCAATGGATGGAATCTCACCATCCATCTCCTTCAAGGTCCAGCATCCTCACCAACACTTATTATGCTCTCCAATCAACGTGGAATCTCATAATCCACTCGCTTTGACACCGCGTAGAGCGTGTTGGGCTCTGATTAAAGTAAGGGGCAATTGTTCCTCTTTGTTCTTGCATTTGCCTCTGCTTTTTGCAATGGAACTTCTAATGAATGAAAAGGAAAAGCACATTAGAAACATAGTGATTCTTTTTTCTTTCACATGTCATGTGCAGTGTTTGTTTTGTGACATTTTCCCCATTTTTTTGTTTGTTCCCTTTGTAGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGGTAATCTTTTGACTTCTTCAACTCTTACATGCTATGCTTAATAAAAAAACAATTAATTTGGGTTCTTTATTTTGGTAACCAAGCAGATTGTTCTTCGTTTTTCCTTCCATCTTGTAGAAGGTGGTGTAGGTTTTACTTTCCAAGCATAATGCTTTACTTTTTTAAGCTCTCATGTTCTCTGCTGGGTAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAAGTTAGAATTTGCACTCGGGAATCATTGATTAACTTTGAACTTTTAGGTTAGAGAAACATCGCAGGTATCAATGTATTCCATGATCAGATTACTGGACACACTGACCCATATCTCTACAATGATATGATATTATTCACTTTGATAAATTTCCATAACCTCTCCTTTCCTTACAAGAATGCTATCAATCCCCGAGAATATTGTGAAGGAAACTTAAAAGTATATGAAAGAAATTGATGTTGTTTTTCCCTCTTCTCATTTTGTTTTAATAATTATGCAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGTAATCCTTTTATTTATTATTACTTTCTTGGAACAACCTTCAACTGTCTAGAAGTTTCCCATTTATTCTGATAAGTTCACACATAACCTCATTGCAACAATACTCGTTAGACAAGATCAATAAAGTCCCATATAACATCATCATACGTTGCGTCGTGTTAGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

mRNA sequence

CAGTCAACGGCCACGATCCATTCTCATCGTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGATAACAAAAGCGCGGGAAAGCCAAACCTAATCCATCCTATAAACTGTGTATCACTGCCAACCAACGGTCACATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAACTTTGGAGCCGATAAATCTCGTTTCTTCCATTACACTGAGTTGCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAATGAGAAAACCCTTGATG

Coding sequence (CDS)

ATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGCGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGACTGGCGGCGAACTCGAAGGCCGATTTGATGGTGGAGGAGCCTGTGGTGAAGTTGCCGAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCGGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATAGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTTCTCAACCCTGATAAGAGTCATAGTGAGGTGGAGGTTCTAGAGGGAAATCTTGAGTTTGCGACTTTAGGACTCGGGTTTTCAGCTGATTCACGAGCAAAACCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA

Protein sequence

MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
Homology
BLAST of Carg03877 vs. NCBI nr
Match: KAG7020338.1 (hypothetical protein SDJN02_17022 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 204

BLAST of Carg03877 vs. NCBI nr
Match: XP_023536837.1 (selenoprotein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.8e-81
Identity = 172/204 (84.31%), Postives = 173/204 (84.80%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVPASSR TRRSPRLAANSKADL VEEPVVKLPKRKKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRATRRSPRLAANSKADLTVEEPVVKLPKRKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRA+EVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAIEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

BLAST of Carg03877 vs. NCBI nr
Match: XP_022950994.1 (selenoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 6.5e-81
Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

BLAST of Carg03877 vs. NCBI nr
Match: XP_023002520.1 (selenoprotein H-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFT+MKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTQMKELDMEEVISDIIEKIKG 176

BLAST of Carg03877 vs. NCBI nr
Match: KAG6585418.1 (Fasciclin-like arabinogalactan protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-77
Identity = 165/193 (85.49%), Postives = 165/193 (85.49%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 165

Query: 181 RPFTRMKELDMEE 194
           RPFTRMKELDMEE
Sbjct: 181 RPFTRMKELDMEE 165

BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1GHF7 (selenoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.1e-81
Identity = 172/204 (84.31%), Postives = 172/204 (84.31%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFTRMKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTRMKELDMEEVISDIIEKIKG 176

BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1KP64 (selenoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.7e-80
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMK 180
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLLDMK
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLLDMK 176

Query: 181 RPFTRMKELDMEEVISDIIEKIKG 205
           RPFT+MKELDMEEVISDIIEKIKG
Sbjct: 181 RPFTQMKELDMEEVISDIIEKIKG 176

BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1GHC6 (selenoprotein H-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.3e-66
Identity = 145/177 (81.92%), Postives = 145/177 (81.92%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGP
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPD                            KPRRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLL 149

BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1KLJ2 (uncharacterized protein LOC111496337 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.2e-65
Identity = 144/177 (81.36%), Postives = 145/177 (81.92%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKRGP 60
           MAPKKRSKIQEDETAAAKPVP SSRVTRRSPRLAANSKADL VEEPVVKLPK+KKAKR P
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEEPVVKLPKKKKAKRAP 60

Query: 61  KENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120
           KEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG
Sbjct: 61  KENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPG 120

Query: 121 ITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 178
           ITVLLNPDKS                            RRGCFEIRSEDGEKFISLL
Sbjct: 121 ITVLLNPDKS----------------------------RRGCFEIRSEDGEKFISLL 149

BLAST of Carg03877 vs. ExPASy TrEMBL
Match: A0A6J1K9R2 (selenoprotein H-like OS=Cucurbita maxima OX=3661 GN=LOC111492377 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.9e-62
Identity = 141/207 (68.12%), Postives = 157/207 (75.85%), Query Frame = 0

Query: 1   MAPKKRSKIQEDETAAA---KPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAK 60
           MAP+KRSK QED+ AAA   KP P SS VTRRSPRLA NS ADL+VEE V +LPK KK K
Sbjct: 1   MAPRKRSKNQEDKPAAAAEEKPAPVSSMVTRRSPRLAVNSMADLVVEEAVTELPKSKKVK 60

Query: 61  RGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKG 120
           R PKENGKA+EV NEGE++DAAS+KL  +AKNR VVIE CKQCQSFKKRA++VQ+GLE G
Sbjct: 61  RAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENG 120

Query: 121 VPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLL 180
           V GITVLLNP+                            KPR+GCFEIRS+DGEKFISLL
Sbjct: 121 VSGITVLLNPN----------------------------KPRKGCFEIRSDDGEKFISLL 179

Query: 181 DMKRPFTRMKELDMEEVISDIIEKIKG 205
           DMKRPFTRMKEL+MEEVISDIIEKIKG
Sbjct: 181 DMKRPFTRMKELNMEEVISDIIEKIKG 179

BLAST of Carg03877 vs. TAIR 10
Match: AT2G24440.1 (selenium binding )

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-31
Identity = 88/196 (44.90%), Postives = 111/196 (56.63%), Query Frame = 0

Query: 15  AAAKPVPASSRVTRRSPRLAANSKADLMVEEPVVKLPKRKKAKR--GPKENGKAEEV--- 74
           A  + + +  R TR   +   +S   + +E P  K  K  KAK     K+  K EEV   
Sbjct: 16  ANTRMLRSMDRKTRSDTKRDGSSSKLMKIESPEKKKRKTTKAKNVGAAKKKVKKEEVAVK 75

Query: 75  --ENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNP 134
             + E ED DAA ++   ++  + +VIEHCKQC+SFK+RA EV+ GLE+ VPGI V +NP
Sbjct: 76  IEKEEEEDDDAAEKEEDDDSDKKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNP 135

Query: 135 DKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK 194
           D                            KPRRGCFEIR E GE FISLL MKRPFT MK
Sbjct: 136 D----------------------------KPRRGCFEIREEGGETFISLLAMKRPFTPMK 183

Query: 195 ELDMEEVISDIIEKIK 204
           EL+MEEVI+DI+EKIK
Sbjct: 196 ELNMEEVIADIVEKIK 183

BLAST of Carg03877 vs. TAIR 10
Match: AT4G31360.1 (selenium binding )

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-30
Identity = 94/217 (43.32%), Postives = 115/217 (53.00%), Query Frame = 0

Query: 3   PKKRSKIQEDETAAAKPVPASSRVTR------RSPRLAANSKADLMVEEPVVKLPKRK-- 62
           P K+SK   +E A      ASSRVTR      RS      +KA     +P  K  KRK  
Sbjct: 2   PPKKSKADGEEKAKPLTTLASSRVTRSMDSRTRSQTQQNGAKAAGSATKPATKKAKRKNS 61

Query: 63  -----KAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKN---RAVVIEHCKQCQSFKKR 122
                +AK+G KE    EEVE   E ++   EK   E ++     +VIEHCKQC +FK R
Sbjct: 62  AIETGRAKKGKKE----EEVEEPEEAVEEEVEKEEPEVEDPTRTKIVIEHCKQCNAFKTR 121

Query: 123 AMEVQNGLEKGVPGITVLLNPDKSHSEVEVLEGNLEFATLGLGFSADSRAKPRRGCFEIR 182
           A++V+  LE  VPG+TV LNP+                            KPRRGCFEIR
Sbjct: 122 AIQVKEALEGAVPGVTVSLNPE----------------------------KPRRGCFEIR 181

Query: 183 SEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK 204
            E G+ FISLL+MKRPF  MK LDMEEVI DII+K+K
Sbjct: 182 EEGGQTFISLLEMKRPFAPMKALDMEEVIEDIIKKVK 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7020338.13.2e-104100.00hypothetical protein SDJN02_17022 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023536837.13.8e-8184.31selenoprotein H-like [Cucurbita pepo subsp. pepo][more]
XP_022950994.16.5e-8184.31selenoprotein H-like isoform X1 [Cucurbita moschata][more]
XP_023002520.11.6e-7983.33selenoprotein H-like isoform X1 [Cucurbita maxima][more]
KAG6585418.11.5e-7785.49Fasciclin-like arabinogalactan protein 5, partial [Cucurbita argyrosperma subsp.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHF73.1e-8184.31selenoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE... [more]
A0A6J1KP647.7e-8083.33selenoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4... [more]
A0A6J1GHC68.3e-6681.92selenoprotein H-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE... [more]
A0A6J1KLJ29.2e-6581.36uncharacterized protein LOC111496337 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1K9R21.9e-6268.12selenoprotein H-like OS=Cucurbita maxima OX=3661 GN=LOC111492377 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G24440.15.0e-3144.90selenium binding [more]
AT4G31360.15.6e-3043.32selenium binding [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availablePANTHERPTHR33638SELENOPROTEIN Hcoord: 1..203

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03877-RACarg03877-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005794 Golgi apparatus