Carg03765 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03765
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	29 kDa ribonucleoprotein, chloroplastic-like
Location	Carg_Chr14: 896053 .. 898451 (-)
RNA-Seq Expression	Carg03765
Synteny	Carg03765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACCTTATCTCAAAATCTCGGAAGCCATGTCTGCCTCTGCAACTTCCTTCACGCTCTCGCCCTCAACCCTCAAAACCCTATCCCTTTCTAACCCTAAAATCAAACTCTTCCCTCTCAATCCATCTTCCATTCGCCTTCCTTCAAATCCCATTTCCGTTTCTTCTCTCGTTCTTCGTTCGAGTAGGGTTTTTCCTCCCTTATCCTCTCGCTTTGTTAGAAATGTCGCCGTCTCATCCGATTTCGAGCAGGAGGAAAGCATTTTTGAGAGCGATGGTGATGAGTCTAGCTACGCTCCTGACCCTAAACTATTCGTTGGAAATCTCCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGTGCCGGACAAGTTGAAATGGTCGAGGTAATTTGTTTTTCCCTTCCATGTTTTGTAGGTTTTGTAATGCGTTGCTTTAGATTATTAAGTTTTTCCTGTTTTCTCAAGGAGACCTATTTGCTTTGCCCTAATTTTATAAACTGAGTGCTGTTCTTTTAAAAGGTGGTTTACGACAAGATGACGGGACGAAGCAGGGGGTTTGCTTTTGTCACCATGTCGAGTGCCGACGAGGCTGAAGCCGCTGCTCAACAATTTAATGGCTATGTAAGTGGCTACACCCCTTTTGCGCCACTTTAATACTCTGCAGTATTGCTTTTGGTTCTGCTTCAATTACTCGGCAATTCAATTACTGTAACTGTAACCCAAAAAAATGAGGAAGCTATAGTTCCTTTTAGTGCCGTTCAGCTTTGAACATCAAATTTTGGACGAGCACACGTTATATTGTCGTCATAGAGAACCCATCCTAATGATATGCTCTAGTTCGGTCTTATTTGTGGGTGGAAACGTTTGTAGAGCTTATATTCTTAGTTTTAACGCCAAAAGTTCTATAGATTTGCCTTTATGCTCCAGTTACATACTGTTGTCTTTCATTTTTGGTCAAGGGTGTGTTGCATTCGCCTCTAATTGATGATTCCTTGTAACTCCTCACAGGAACTTGAGGGTAGATCACTGAGGGTAAATAATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATTCTTCAAATTTTGATAAGCCCAACCGTGTTCATGTGAGTAACCTTGCTTGGGGCGTTGATGACCATGCACTTGAGAACTTTTTTAGGCAACAAGGAGATGTTGTGGAGGCAAAAGTAGTTTACGACCGCGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGATGTTACCAATGCCATTCAGTCCTTGGATGGAGCTGTAAGTTCTTGGCTCTTCATTTTTATGCTTTTTTTTGGGTCAGTTCTGCATTTGTTTACGATTACTCTTCATATGCCTTCCCATGTTCAATTAAAGCTTGCTTACTGAATTCATGTTCAATTCTTATGGGCATGAAATCCTGTTGTTCATATGAATCATGATTTCCTCACTTGTTTCCTTCGTGGATGTTCTCAATTGTTCACGAAGCTGAAGTTGATGTTTTTTGTTCTTTCCCATTTGCCTCAGCTGAAGTGAATTTTTGTGGTCGCAAGTTTTATCCCAGTTTTTCATGCATTGAATTCCCGATAATACACCTGATCCTTACTTAATGATGAAGAAATGCATGATTCGGAATCAAGTATCTTCCATATATCTAAGTACAAATGTATACCTTGCAGGACTTGAATGGAAGATCCGTCCGAGTATCACCAGCAGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGAGCTTTTGAGAGGAAAAAATTAACGTGGTTTTTGGGCTCCTTTATATTAACCTTATTTTTCTCTGTAATGTTGTCCGATAGTAGATGGTGCCAGATGATTTGGCTGTACCTTCCCTATGAACGATGGCATTTTATATTTTTCTGATTTTGCCACTCTTCAATTGAGATTAAAACCTCTGTAGCTTAAAACATCTGTGATCTTGGACGAGTGAAGCCCACCTTTCAAAAGGTGTTCATGGGGCCATATTTTGTGCCTCAAGGCTTAGCCTTACTTGCACATATAAAACGAGATGTAAGCCATGAGTCAAGCCATAATGTCGTGGCTCTCTTGGCTTATGCCTTCCTAACATTTAAAAAGGAGCATAAGTTCTCATGGCTATGCCTCTTATGGGGCGTGTCTTAGGGATGAAGGCTGACTTGGTGGGGCTTGATAAAATAAGAAACTCGAGTCTGGATGAAGGCTTGAGTCAGGGCCCAATTTTTGGGATTGGTGATATTTATTCAGTAGGTTGAAATATGGTGATTGGGTTGGGTCTGTGAAGTTTGCAGTTAGTAGCTACTTGGTCTTTCATTTTAATTTCGAAATTTGAAAATTAGTTTTAGATTT

mRNA sequence

CCAACCTTATCTCAAAATCTCGGAAGCCATGTCTGCCTCTGCAACTTCCTTCACGCTCTCGCCCTCAACCCTCAAAACCCTATCCCTTTCTAACCCTAAAATCAAACTCTTCCCTCTCAATCCATCTTCCATTCGCCTTCCTTCAAATCCCATTTCCGTTTCTTCTCTCGTTCTTCGTTCGAGTAGGGTTTTTCCTCCCTTATCCTCTCGCTTTGTTAGAAATGTCGCCGTCTCATCCGATTTCGAGCAGGAGGAAAGCATTTTTGAGAGCGATGGTGATGAGTCTAGCTACGCTCCTGACCCTAAACTATTCGTTGGAAATCTCCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGTGCCGGACAAGTTGAAATGGTCGAGGTGGTTTACGACAAGATGACGGGACGAAGCAGGGGGTTTGCTTTTGTCACCATGTCGAGTGCCGACGAGGCTGAAGCCGCTGCTCAACAATTTAATGGCTATGAACTTGAGGGTAGATCACTGAGGGTAAATAATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATTCTTCAAATTTTGATAAGCCCAACCGTGTTCATGTGAGTAACCTTGCTTGGGGCGTTGATGACCATGCACTTGAGAACTTTTTTAGGCAACAAGGAGATGTTGTGGAGGCAAAAGTAGTTTACGACCGCGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGATGTTACCAATGCCATTCAGTCCTTGGATGGAGCTGACTTGAATGGAAGATCCGTCCGAGTATCACCAGCAGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGAGCTTTTGAGAGGAAAAAATTAACGTGGTTTTTGGGCTCCTTTATATTAACCTTATTTTTCTCTGTAATGTTGTCCGATAGTAGATGGTGCCAGATGATTTGGCTGTACCTTCCCTATGAACGATGGCATTTTATATTTTTCTGATTTTGCCACTCTTCAATTGAGATTAAAACCTCTGTAGCTTAAAACATCTGTGATCTTGGACGAGTGAAGCCCACCTTTCAAAAGGTGTTCATGGGGCCATATTTTGTGCCTCAAGGCTTAGCCTTACTTGCACATATAAAACGAGATGTAAGCCATGAGTCAAGCCATAATGTCGTGGCTCTCTTGGCTTATGCCTTCCTAACATTTAAAAAGGAGCATAAGTTCTCATGGCTATGCCTCTTATGGGGCGTGTCTTAGGGATGAAGGCTGACTTGGTGGGGCTTGATAAAATAAGAAACTCGAGTCTGGATGAAGGCTTGAGTCAGGGCCCAATTTTTGGGATTGGTGATATTTATTCAGTAGGTTGAAATATGGTGATTGGGTTGGGTCTGTGAAGTTTGCAGTTAGTAGCTACTTGGTCTTTCATTTTAATTTCGAAATTTGAAAATTAGTTTTAGATTT

Coding sequence (CDS)

ATGTCTGCCTCTGCAACTTCCTTCACGCTCTCGCCCTCAACCCTCAAAACCCTATCCCTTTCTAACCCTAAAATCAAACTCTTCCCTCTCAATCCATCTTCCATTCGCCTTCCTTCAAATCCCATTTCCGTTTCTTCTCTCGTTCTTCGTTCGAGTAGGGTTTTTCCTCCCTTATCCTCTCGCTTTGTTAGAAATGTCGCCGTCTCATCCGATTTCGAGCAGGAGGAAAGCATTTTTGAGAGCGATGGTGATGAGTCTAGCTACGCTCCTGACCCTAAACTATTCGTTGGAAATCTCCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGTGCCGGACAAGTTGAAATGGTCGAGGTGGTTTACGACAAGATGACGGGACGAAGCAGGGGGTTTGCTTTTGTCACCATGTCGAGTGCCGACGAGGCTGAAGCCGCTGCTCAACAATTTAATGGCTATGAACTTGAGGGTAGATCACTGAGGGTAAATAATGGACCCCCTCCACCAAAAAGGGATGATTTCTCTTTCAGAGGTTCCAGAAATTCTTCAAATTTTGATAAGCCCAACCGTGTTCATGTGAGTAACCTTGCTTGGGGCGTTGATGACCATGCACTTGAGAACTTTTTTAGGCAACAAGGAGATGTTGTGGAGGCAAAAGTAGTTTACGACCGCGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGATGTTACCAATGCCATTCAGTCCTTGGATGGAGCTGACTTGAATGGAAGATCCGTCCGAGTATCACCAGCAGAAGCAAGGCCGCCAAGGCGCCAGTTTTGA

Protein sequence

MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSSRFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFRGSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF

Homology

[Close]

BLAST of Carg03765 vs. NCBI nr
Match: KAG6580608.1 (RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017363.1 RNA-binding protein CP29B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 531.9 bits (1369), Expect = 3.2e-147
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. NCBI nr
Match: XP_022935473.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 528.9 bits (1361), Expect = 2.7e-146
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRV PPLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. NCBI nr
Match: XP_023528633.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525.0 bits (1351), Expect = 3.9e-145
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRL SNPISVSSLVLRSSRV PPLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. NCBI nr
Match: XP_022984093.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 520.8 bits (1340), Expect = 7.3e-144
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRL SNPISVSSLVLRSSRV  PLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMS+ADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 433.7 bits (1114), Expect = 1.2e-117
Identity = 226/277 (81.59%), Postives = 245/277 (88.45%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSS RL SNP S+SS+VLRS RV PP SS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSD++QEE   E+D +E+SYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPP+RDD SFR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRN+S FD PNRVHVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESG+SRGFGFVTF
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAE+V NAIQSLDGA+L+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 9.8e-83
Identity = 177/286 (61.89%), Postives = 212/286 (74.13%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNP-----KIKLFPLNPSSIRLPSNPISVSSLVLRSSRVF 60
           M++SA+S      T +TL L  P      +  F L PSS+ L     S+SS    SS  F
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNL-----SLSS----SSSCF 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDG---DESSYAPDPKLFVGNLPFSVDSAQLAGLF 120
              SSRFVR V + SDF+Q E + + D    +E +++PD K+FVGNLPFS DSA LA LF
Sbjct: 61  ---SSRFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELF 120

Query: 121 ESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPP 180
           E AG VEMVEV+YDK+TGRSRGF FVTMSS +E EAA QQFNGYEL+GR+LRVN+GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDFSFR-GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGR 240
           KR++ SFR GSR   +FD  NRV+V NLAWGVD  ALE  F +QG VV+AKVVYDR+SGR
Sbjct: 181 KRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 240

Query: 241 SRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           SRGFGFVT++SAE+V NAI+SLDG DLNGR++RVSPAEARPPRRQF
Sbjct: 241 SRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of Carg03765 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-79
Identity = 172/293 (58.70%), Postives = 207/293 (70.65%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNP-----KIKLFPLNPSSIRLP-SNPISVSSLVLRSSRV 60
           M++SA+S      T +TL L  P      +  F L PSS+ L  S+P S           
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSC---------- 60

Query: 61  FPPLSSRFVRNVAVSSDFEQEESIFESD---GDESSYAPDPKLFVGNLPFSVDSAQLAGL 120
               SSRFVR V +  DF+Q E + + D    +E +++PD K+FVGNL FS DSA LA L
Sbjct: 61  ---FSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAEL 120

Query: 121 FESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPP 180
           FE AG VEMVEV+YDK+TGRSRGF FVTMSS +E EAA QQFNGYEL+GR+LRVN+GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PKRDDFSFR-------GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVV 240
            KR++ SFR       GSR   +FD  NRV+V NLAWGVD  ALE  F +QG VV+AKVV
Sbjct: 181 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVV 240

Query: 241 YDRESGRSRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           YDR+SGRSRGFGFVT++SAE+V NAI+SLDG DLNGR++RVSPAEARPPRRQF
Sbjct: 241 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

[Close]

BLAST of Carg03765 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 9.5e-78
Identity = 173/295 (58.64%), Postives = 213/295 (72.20%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTL--SLSNPKIKLFPLNPS-SIRLPSNPISVSSLVLRSSRVFPP 60
           M+ASA+S  LS    K+L   +S P   +  L+PS S +L S+ +S S     +S     
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRP-ASVSLLSPSLSFKLNSDSVSFSIAAKWNSP---- 60

Query: 61  LSSRFVRNVAVSSDFEQEESIFE--SDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESA 120
            +SRF RNVA++S+FE EE  F   +   E S++ D KLFVGNLPF+VDSAQLA LFESA
Sbjct: 61  -ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 120

Query: 121 GQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRD 180
           G VEMVEV+YDK+TGRSRGF FVTMSS  E EAAAQQFNGYEL+GR LRVN GPPPPKR+
Sbjct: 121 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 180

Query: 181 DFSFRGSRNS-------------SNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAK 240
           D   RG R+S             S     NRV+V NL+WGVDD ALE+ F +QG VVEA+
Sbjct: 181 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 240

Query: 241 VVYDRESGRSRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           V+YDR+SGRS+GFGFVT++S+++V NAI+SLDGADL+GR +RVS AEARPPRRQ+
Sbjct: 241 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Carg03765 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 270.0 bits (689), Expect = 3.0e-71
Identity = 174/346 (50.29%), Postives = 210/346 (60.69%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPS-SIRLPSNPI----SVSSLVLRSSRVF 60
           MSASA+S +        L +S P   +  L PS S +L S+ +    + S+L   S   +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDGDES------SYAPDPKLFVGNLPFSVDSAQLA 120
           P   SRFVRNVAVSSDFE EE    +DGD+S      S++PD KLFVGNL F+VDSAQLA
Sbjct: 61  P---SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 120

Query: 121 GLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGP 180
            LFESAG VEMVEV+YDK+TGRSRGF FVTMS+A E EAAAQQFNGYE EGR LRVN GP
Sbjct: 121 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 180

Query: 181 PPPKRDDFSFRGSR---------------------------------------------- 240
           PPPKR++   RG R                                              
Sbjct: 181 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYG 240

Query: 241 ------------NSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGR 278
                       + S     NR++V NL+WGVDD ALEN F +QG VVEA+V+YDR+SGR
Sbjct: 241 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 300

[Close]

BLAST of Carg03765 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.1e-68
Identity = 156/287 (54.36%), Postives = 196/287 (68.29%), Query Frame = 0


Query: 11  SPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSSRFVRNVAVSS 70
           +PS+LK     N  +  F L  SS+ L     S+SS  +  S    P  S F   VA+ S
Sbjct: 18  TPSSLK----PNSTLSFFSLPSSSLNL-----SLSSSSIGHSASIKPFESSFSTRVAL-S 77

Query: 71  DFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEMVEVVYDKMTG 130
           DF+Q E   E   ++  ++ D KLFVGNLPFSVDSA LAGLFE AG VE+VEV+YDK++G
Sbjct: 78  DFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 137

Query: 131 RSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFRGSR------- 190
           RSRGF FVTMS+ +E EAA QQFNGYE++GR++RVN GP P KR++ SF G R       
Sbjct: 138 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 197

Query: 191 -----NSS--------NFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESG 250
                NSS        + D  NRV+V NL+WGVDD AL+  F +QG+VV+AKVVYDR+SG
Sbjct: 198 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 257

Query: 251 RSRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           RSRGFGFVT++SA++V +AI SL+G DL+GRS+RVS AE R PRRQF
Sbjct: 258 RSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

[Close]

BLAST of Carg03765 vs. ExPASy TrEMBL
Match: A0A6J1FAM3 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442336 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.3e-146
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRV PPLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. ExPASy TrEMBL
Match: A0A6J1J9K2 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482509 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.5e-144
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRL SNPISVSSLVLRSSRV  PLSS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEVVYDKMTGRSRGFAFVTMS+ADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Carg03765 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 1.2e-110
Identity = 217/278 (78.06%), Postives = 237/278 (85.25%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNP-SSIRLPSNPISVSSLVLRSSRVFPPLS 60
           MSASA S TL   TLKTLS SNPK KLF LNP SSIRL SNPIS+SS +L S RV PP S
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE   E DGD+SSYAPD KLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 MVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSF 180
            VEV+YDK TGRSRGF FVTMS+  E EAAAQQFNGYEL+GR LRVN GPPPPKRDD SF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVT 240
           RGSRN+S FD  NRVHVSNLAWGVDD  LEN FR++G+V+EAKVVYDR+SG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 FNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           +NSAE+V  AIQSLDG DL+GR +RV+ AEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of Carg03765 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.5e-110
Identity = 214/277 (77.26%), Postives = 238/277 (85.92%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           M+ASAT  TLS  T KTLS SNPK +LF LNPSSI   SNPIS+S+LVLRS RV P   S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSDF+QEE + + DGD+SSYAPD +LFVGNLPF++DSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEV+YDKMTGRSRGF FVTMS+  EAEAAAQQFNGYELEGR LRVN GPPPPKRDD SFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
            S+N+S FD  N VHVSNLAWGVDD  LEN FR+QG+VV+AKVVYDR+SGRSRGFGFVT+
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           +SAE+V NAIQSLDG DLNGRS+RV+ AEAR PRRQF
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of Carg03765 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 6.3e-109
Identity = 215/277 (77.62%), Postives = 235/277 (84.84%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVFPPLSS 60
           MSASA S TLS  TLKTLSLSNPK KLF LNPSS     NPIS+SS VL S RV  P SS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120
           RFVRNVAVSSD++QEE   E+DGD+S YAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180
           VEV+YDK TG+SRGF FVTMS+ DE EAAAQQFNGYEL+GRSLRVN G PPPKRDD  FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240
           GSRN+S FD  NRVHVSNLAWGVDD  LEN FR+ G+V+EAKVVYDR+SGRSRGFGFVT+
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           NSAE+V NAIQSL+G DL GRS+RV+ AEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Carg03765 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 291.6 bits (745), Expect = 6.7e-79
Identity = 173/295 (58.64%), Postives = 213/295 (72.20%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTL--SLSNPKIKLFPLNPS-SIRLPSNPISVSSLVLRSSRVFPP 60
           M+ASA+S  LS    K+L   +S P   +  L+PS S +L S+ +S S     +S     
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRP-ASVSLLSPSLSFKLNSDSVSFSIAAKWNSP---- 60

Query: 61  LSSRFVRNVAVSSDFEQEESIFE--SDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESA 120
            +SRF RNVA++S+FE EE  F   +   E S++ D KLFVGNLPF+VDSAQLA LFESA
Sbjct: 61  -ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 120

Query: 121 GQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRD 180
           G VEMVEV+YDK+TGRSRGF FVTMSS  E EAAAQQFNGYEL+GR LRVN GPPPPKR+
Sbjct: 121 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 180

Query: 181 DFSFRGSRNS-------------SNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAK 240
           D   RG R+S             S     NRV+V NL+WGVDD ALE+ F +QG VVEA+
Sbjct: 181 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 240

Query: 241 VVYDRESGRSRGFGFVTFNSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 278
           V+YDR+SGRS+GFGFVT++S+++V NAI+SLDGADL+GR +RVS AEARPPRRQ+
Sbjct: 241 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Carg03765 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-72
Identity = 174/346 (50.29%), Postives = 210/346 (60.69%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPS-SIRLPSNPI----SVSSLVLRSSRVF 60
           MSASA+S +        L +S P   +  L PS S +L S+ +    + S+L   S   +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDGDES------SYAPDPKLFVGNLPFSVDSAQLA 120
           P   SRFVRNVAVSSDFE EE    +DGD+S      S++PD KLFVGNL F+VDSAQLA
Sbjct: 61  P---SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 120

Query: 121 GLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGP 180
            LFESAG VEMVEV+YDK+TGRSRGF FVTMS+A E EAAAQQFNGYE EGR LRVN GP
Sbjct: 121 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 180

Query: 181 PPPKRDDFSFRGSR---------------------------------------------- 240
           PPPKR++   RG R                                              
Sbjct: 181 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYG 240

Query: 241 ------------NSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGR 278
                       + S     NR++V NL+WGVDD ALEN F +QG VVEA+V+YDR+SGR
Sbjct: 241 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 300

[Close]

BLAST of Carg03765 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-72
Identity = 174/346 (50.29%), Postives = 210/346 (60.69%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPS-SIRLPSNPI----SVSSLVLRSSRVF 60
           MSASA+S +        L +S P   +  L PS S +L S+ +    + S+L   S   +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDGDES------SYAPDPKLFVGNLPFSVDSAQLA 120
           P   SRFVRNVAVSSDFE EE    +DGD+S      S++PD KLFVGNL F+VDSAQLA
Sbjct: 61  P---SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 120

Query: 121 GLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGP 180
            LFESAG VEMVEV+YDK+TGRSRGF FVTMS+A E EAAAQQFNGYE EGR LRVN GP
Sbjct: 121 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 180

Query: 181 PPPKRDDFSFRGSR---------------------------------------------- 240
           PPPKR++   RG R                                              
Sbjct: 181 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYG 240

Query: 241 ------------NSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGR 278
                       + S     NR++V NL+WGVDD ALEN F +QG VVEA+V+YDR+SGR
Sbjct: 241 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 300

[Close]

BLAST of Carg03765 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-72
Identity = 174/346 (50.29%), Postives = 210/346 (60.69%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPS-SIRLPSNPI----SVSSLVLRSSRVF 60
           MSASA+S +        L +S P   +  L PS S +L S+ +    + S+L   S   +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDGDES------SYAPDPKLFVGNLPFSVDSAQLA 120
           P   SRFVRNVAVSSDFE EE    +DGD+S      S++PD KLFVGNL F+VDSAQLA
Sbjct: 61  P---SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 120

Query: 121 GLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGP 180
            LFESAG VEMVEV+YDK+TGRSRGF FVTMS+A E EAAAQQFNGYE EGR LRVN GP
Sbjct: 121 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 180

Query: 181 PPPKRDDFSFRGSR---------------------------------------------- 240
           PPPKR++   RG R                                              
Sbjct: 181 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYG 240

Query: 241 ------------NSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGR 278
                       + S     NR++V NL+WGVDD ALEN F +QG VVEA+V+YDR+SGR
Sbjct: 241 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 300

[Close]

BLAST of Carg03765 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 174/367 (47.41%), Postives = 210/367 (57.22%), Query Frame = 0


Query: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPS-SIRLPSNPI----SVSSLVLRSSRVF 60
           MSASA+S +        L +S P   +  L PS S +L S+ +    + S+L   S   +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  PPLSSRFVRNVAVSSDFEQEESIFESDGDES------SYAPDPKLFVGNLPFSVDSAQLA 120
           P   SRFVRNVAVSSDFE EE    +DGD+S      S++PD KLFVGNL F+VDSAQLA
Sbjct: 61  P---SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 120

Query: 121 GLFESAGQVEMVEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGY------------- 180
            LFESAG VEMVEV+YDK+TGRSRGF FVTMS+A E EAAAQQFNGY             
Sbjct: 121 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYL 180

Query: 181 --------ELEGRSLRVNNGPPPPKRDDFSFRGSR------------------------- 240
                   E EGR LRVN GPPPPKR++   RG R                         
Sbjct: 181 LIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 240

Query: 241 ---------------------------------NSSNFDKPNRVHVSNLAWGVDDHALEN 278
                                            + S     NR++V NL+WGVDD ALEN
Sbjct: 241 GGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALEN 300

The following BLAST results are available for this feature:

BLAST of Carg03765 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580608.1	3.2e-147	100.00	RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022935473.1	2.7e-146	99.64	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata]	[more]
XP_023528633.1	3.9e-145	99.28	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984093.1	7.3e-144	98.56	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita maxima]	[more]
XP_038905951.1	1.2e-117	81.59	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg03765 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	9.8e-83	61.89	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	1.3e-79	58.70	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	9.5e-78	58.64	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	3.0e-71	50.29	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	3.1e-68	54.36	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Carg03765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAM3	1.3e-146	99.64	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J9K2	3.5e-144	98.56	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LAY6	1.2e-110	78.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A6J1F601	1.5e-110	77.26	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5A7TQA3	6.3e-109	77.62	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Carg03765 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	6.7e-79	58.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	2.1e-72	50.29	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	2.1e-72	50.29	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	2.1e-72	50.29	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	1.1e-68	47.41	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 193..266 e-value: 1.6E-26 score: 104.1 coord: 93..166 e-value: 4.0E-27 score: 106.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..263 e-value: 8.4E-20 score: 70.4 coord: 94..164 e-value: 1.7E-19 score: 69.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..270 score: 19.774769
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.228996
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..183 e-value: 1.7E-28 score: 101.4 coord: 184..277 e-value: 3.4E-28 score: 100.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..188
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..274
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..274
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 187..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03765-RA	Carg03765-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding