Carg03704 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03704
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosome production factor 2 homolog
Location	Carg_Chr14: 1169603 .. 1172036 (-)
RNA-Seq Expression	Carg03704
Synteny	Carg03704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGACGCCCGCGCCATAAAACCCACCAAAATCGGCGTCAGTTTGCAGTCGCCGGAAGTGTCGATATTCTTCTGAGCATCAAAACCCTAAATCATCTCCGTCATCTCGTCGTTGTGGATCATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTAAGTTCTTCCAGTCCTGTCTGTATATCTTCATGCTTCGGGAGATAGTTTGTACTGGACGATTAACAGCATGTCAAAGAAGTTTGTATAGGCTGTGAATTGTTATTTACTTCCCGTATTGATGGATTTGGTTATCGATTTGAATCGCAGGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGGTGCGTACACTTGTGAATGCTTAATATTCCATGCGTCGGTTATTTACTTGGCTTAATTTCTTGGAGCTCAGCAGCAAGTAACGTACTTTTTTGAGTTTTGTATGTGCTTTTACAATTCAGTTTTCCCATCCGGAGGCAATTTCTGTACTCTTCATCACAGAGACTTTGATATAAAATTAATTCTAGCCGTTTAGTGATTCGTTTAAGGTTTGATTCTTTTGGATGAGTACTTCTCGTTTTCCCTAAATGGTTTTTGATCGAAGAACTTAGCAGTCCTCAAACAGATGAACCTATGTAGAAAAATATAGTCACGATGTGCATTTTTGTTGGGGTAAGGTGAGCCGCCAAGAATTTAGAGAACTTCAATTTAGGAGGCACCCTATTTTGAGGGAAACCTCCGTCTTATTGTGTTCAAGTTTTGTATCTCTTTTCCTCTGTTATTATAAAACAGTAAACAGCTTCGTGCTTTTATGTCTCCAGTTATTTATTGTTGTATTTGTTGCACCTCTTTTGCAGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTAAAAACCCTGCAGCTTTAGCTGACTTGAGTTTGAATGTTTAGATATAAAAGATATCTATTGTCTTTGCAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGTTTAATGGCTATCTTTTAAATGCATGCATTTCATTTTTTCTATTTAGCCGTTTGTCTAATTTTGATGTTTACTTCTTCCAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTGTGCACATCTCTGTCTGTATATGTCTTTTCTTGTTAAAGGGCTTGCTACTGTCACAATGCATGCATATCCTCTAGATTGGAAGTGGTTCATGTAATTGAACTCTTCTCTTGTCATGTTAGGTTCATGATATGAATTCTCATATCATGTTTATCACCAAAGTAGGTACTTCATTATGTCATCCGGTACAAATTTGCAAGTCATTTGAATAAACTTGATTTTCAACATTGACTCATAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAGTTCAATATTAGTGGAATAGTTTTGATCCGATTCTCCTCTTGCTAACTTGAGTCAGCTGTTGTGAGTTGCATGGTAGCACGCCAAATATATGGAGAGAGCAGACAAATTATTTATTGCTTATATACAATTTTGTTTTTGTTCTTCAATCTGATTCTTACATGCTGAGCCTATCTTTTATCATCTTAATCATTCAAGCTCTTTCAAAGTTTGATCGTGAACCTCATTGATTCTGTTGTTGTGTAGCAAACAGAAGTTCTTTCAAAGTATGTATATGTTAGCAAGATGA

mRNA sequence

TAAAGACGCCCGCGCCATAAAACCCACCAAAATCGGCGTCAGTTTGCAGTCGCCGGAAGTGTCGATATTCTTCTGAGCATCAAAACCCTAAATCATCTCCGTCATCTCGTCGTTGTGGATCATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAGTTCAATATTAGTGGAATAGTTTTGATCCGATTCTCCTCTTGCTAACTTGAGTCAGCTGTTGTGAGTTGCATGGTAGCACGCCAAATATATGGAGAGAGCAGACAAATTATTTATTGCTTATATACAATTTTGTTTTTGTTCTTCAATCTGATTCTTACATGCTGAGCCTATCTTTTATCATCTTAATCATTCAAGCTCTTTCAAAGTTTGATCGTGAACCTCATTGATTCTGTTGTTGTGTAGCAAACAGAAGTTCTTTCAAAGTATGTATATGTTAGCAAGATGA

Coding sequence (CDS)

ATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAG

Protein sequence

MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKDDGPASKKPKEDSEKPKENSE

Homology

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: KAG7017424.1 (Ribosome production factor 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 623.2 bits (1606), Expect = 1.2e-174
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_022934916.1 (ribosome production factor 2 homolog [Cucurbita moschata] >XP_023527626.1 ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 621.7 bits (1602), Expect = 3.5e-174
Identity = 321/322 (99.69%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMA+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: KAG6580669.1 (Ribosome production factor 2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 621.3 bits (1601), Expect = 4.6e-174
Identity = 320/322 (99.38%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKVRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMA+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_022983029.1 (ribosome production factor 2 homolog [Cucurbita maxima])

HSP 1 Score: 619.0 bits (1595), Expect = 2.3e-173
Identity = 318/322 (98.76%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKVRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDL+EVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMA+PDKSKGVKRERREAKMK+
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKS 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_023540188.1 (ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 593.6 bits (1529), Expect = 1.0e-165
Identity = 300/322 (93.17%), Postives = 317/322 (98.45%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           +DD PASKKPKEDSEKPKE+SE
Sbjct: 301 RDDVPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg03704 vs. ExPASy Swiss-Prot
Match: Q9LUG5 (Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.7e-129
Identity = 227/315 (72.06%), Postives = 276/315 (87.62%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M++IRTPK GK +R LE RAPK+VETGKKTLILHGTKTS  L++V+TELY LKK  +++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+ I+PFESGG++SLEFFS KTDCSI VYGSH+KKRPDNLV+GR YDH++YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV+NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+V+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ +M + DKSKG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 KDDGPASKKPKEDSE 316
           K++   +KK K  SE
Sbjct: 301 KEE-TVAKKMKVSSE 314

[Close]

BLAST of Carg03704 vs. ExPASy Swiss-Prot
Match: Q9AWM9 (Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 4.7e-121
Identity = 220/312 (70.51%), Postives = 272/312 (87.18%), Query Frame = 0


Query: 4   IRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSRK 63
           IR P++ + +REL K APK+VETGKKTLILHGTKTS VLN+VL +L+HLK++++VKYS+K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIEN 123
           ND I+PFESGG++SLEFFSLKTDCS+IVYGSHSKKRP+NLV+GRTYDH IYDLVEVG+EN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAGL 183
           +KS+ S+ YDKKL+P++GSKPF  FIGE FE+VEELKHLKEVLLDLF+GEVVENLNLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKEA 243
           DRV+VCTAISP  V++ HCALRLK+SG+ +PR+ELVEVGPSMD+VVRRHR P + L+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKDD 303
           MKTA D AKK  KNV++D + GK+G++YIPDQ++  M++ +  KG+KRERREAK KNKD 
Sbjct: 245 MKTA-DHAKKM-KNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAK-KNKDH 304

Query: 304 GPASKKPKEDSE 316
              SKK K + E
Sbjct: 305 ---SKKQKINPE 310

[Close]

BLAST of Carg03704 vs. ExPASy Swiss-Prot
Match: Q9JJ80 (Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 2.0e-55
Identity = 133/311 (42.77%), Postives = 189/311 (60.77%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           K+  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   V Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  KV+     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKD 302
           +MK  K    KK KN+SQD      GRI++  Q +  +    K KG+K  +R A+    D
Sbjct: 246 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKL-QTRKMKGLK--KRPAENGVDD 305

Query: 303 DGPASKKPKED 314
            G  SK+ K++
Sbjct: 306 QGKKSKRIKKN 306

[Close]

BLAST of Carg03704 vs. ExPASy Swiss-Prot
Match: Q2YDN6 (Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.8e-54
Identity = 129/311 (41.48%), Postives = 191/311 (61.41%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           ++  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R A+ K +D
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKL-QTRKMKGLK--KRPAERKAED 305

Query: 303 DGPASKKPKED 314
           +   SK+ K++
Sbjct: 306 EENKSKRIKKN 306

[Close]

BLAST of Carg03704 vs. ExPASy Swiss-Prot
Match: Q9H7B2 (Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 6.5e-54
Identity = 130/311 (41.80%), Postives = 190/311 (61.09%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           ++  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   V Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
           NF S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R A+   +D
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKL-QTRKMKGLK--KRPAERITED 305

Query: 303 DGPASKKPKED 314
               SK+ K++
Sbjct: 306 HEKKSKRIKKN 306

[Close]

BLAST of Carg03704 vs. ExPASy TrEMBL
Match: A0A6J1F357 (Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111441948 PE=3 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.7e-174
Identity = 321/322 (99.69%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMA+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. ExPASy TrEMBL
Match: A0A6J1J655 (Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481697 PE=3 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.1e-173
Identity = 318/322 (98.76%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKVRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDL+EVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMA+PDKSKGVKRERREAKMK+
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAIPDKSKGVKRERREAKMKS 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           KDDGPASKKPKEDSEKPKENSE
Sbjct: 301 KDDGPASKKPKEDSEKPKENSE 322

[Close]

BLAST of Carg03704 vs. ExPASy TrEMBL
Match: A0A6J1KZU6 (Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498582 PE=3 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.5e-165
Identity = 299/321 (93.15%), Postives = 316/321 (98.44%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENS 322
           +DD PASKKPKEDSEKPKE+S
Sbjct: 301 RDDMPASKKPKEDSEKPKEDS 321

[Close]

BLAST of Carg03704 vs. ExPASy TrEMBL
Match: A0A6J1FZZ6 (Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449459 PE=3 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 9.4e-165
Identity = 299/322 (92.86%), Postives = 316/322 (98.14%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDLVEVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRER EAKMKN
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           +D+GPASKK KEDSEKPKE+SE
Sbjct: 301 RDNGPASKKQKEDSEKPKEDSE 322

[Close]

BLAST of Carg03704 vs. ExPASy TrEMBL
Match: A0A0A0LAR1 (Ribosome production factor 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G750370 PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 7.5e-162
Identity = 296/322 (91.93%), Postives = 313/322 (97.20%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           ML+IRTPKN KV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTELYHLKKES+VKY
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVI RTY+  IYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSF YDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVVENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           +GLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMV+RRHRLP+DGLR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAMKTAKD+AKKKEKNVS+D IQGKIGRIYIPDQKVGDMA+ DKSKGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 KDDGPASKKPKEDSEKPKENSE 323
           +DDGPASKKPKEDSEKPKE+SE
Sbjct: 301 RDDGPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of Carg03704 vs. TAIR 10
Match: AT3G23620.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 462.2 bits (1188), Expect = 3.3e-130
Identity = 227/315 (72.06%), Postives = 276/315 (87.62%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M++IRTPK GK +R LE RAPK+VETGKKTLILHGTKTS  L++V+TELY LKK  +++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+ I+PFESGG++SLEFFS KTDCSI VYGSH+KKRPDNLV+GR YDH++YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV+NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+V+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ +M + DKSKG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 KDDGPASKKPKEDSE 316
           K++   +KK K  SE
Sbjct: 301 KEE-TVAKKMKVSSE 314

The following BLAST results are available for this feature:

BLAST of Carg03704 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017424.1	1.2e-174	100.00	Ribosome production factor 2-like protein [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022934916.1	3.5e-174	99.69	ribosome production factor 2 homolog [Cucurbita moschata] >XP_023527626.1 riboso...	[more]
KAG6580669.1	4.6e-174	99.38	Ribosome production factor 2-like protein, partial [Cucurbita argyrosperma subsp...	[more]
XP_022983029.1	2.3e-173	98.76	ribosome production factor 2 homolog [Cucurbita maxima]	[more]
XP_023540188.1	1.0e-165	93.17	ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg03704 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUG5	4.7e-129	72.06	Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g2362...	[more]
Q9AWM9	4.7e-121	70.51	Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9JJ80	2.0e-55	42.77	Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2	[more]
Q2YDN6	3.8e-54	41.48	Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1	[more]
Q9H7B2	6.5e-54	41.80	Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2	[more]

BLAST of Carg03704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F357	1.7e-174	99.69	Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J655	1.1e-173	98.76	Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481697...	[more]
A0A6J1KZU6	1.5e-165	93.15	Ribosome production factor 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498582...	[more]
A0A6J1FZZ6	9.4e-165	92.86	Ribosome production factor 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114494...	[more]
A0A0A0LAR1	7.5e-162	91.93	Ribosome production factor 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G750370 ...	[more]

BLAST of Carg03704 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23620.1	3.3e-130	72.06	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 31..232 e-value: 1.6E-36 score: 137.3
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 35..231 e-value: 2.6E-32 score: 112.5
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 28..238 score: 23.343094
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..322
IPR039770	Ribosome biogenesis protein Rpf2	PANTHER	PTHR12728	BRIX DOMAIN CONTAINING PROTEIN	coord: 1..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03704-RA	Carg03704-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0032774	RNA biosynthetic process
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0019843	rRNA binding