Carg03658 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03658
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S14
Location	Carg_Chr14: 1428995 .. 1430770 (-)
RNA-Seq Expression	Carg03658
Synteny	Carg03658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTGTGAGTGATCTTCATTAGATTCTTCATCTAAGTCCTTAGTTGATTTTTTGTGTAATTCTGAGTGTTCCATGCTTGAAATGCAGCATGTGACCGATCTATCTGGTAGGGAAACACTTGTCCGCATCACTGGTACGAAATCTGCTCCACTCAATCTTAAAATTGATTCTGGCATTGCTTTCAGGCTGCGTTTTGACTTATTTCAATGGTTTCTTCCTCATGGTCATGTGCACGGTTTTTGATTGATCATGGTCCCTGAATATCACATTGAACTGTCTTCGTGATTCACTCTTCTCCATCTTCTGAGTTGTTGTACTTAAAGTTATATCTTTTCTTTGTTCAGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCTCCTTATGCTGCCATGCTTGCTGCACAGGACGTTTCTCAAAGATGCAAGGTTTGGACACTAGTTGGTTATATGTTTCTTTTGATCCGAATGTTCTCAGTCTAAATGATGAAAACTGCTCTATAAATGCTAACAGTAATGCATTTGTATGGATTGGCTTGCTTTTGAGATAACTGGCTTTGTATTATTGTGTTTTTTCTTCTGTGAAACAACATATTGGATGATCACCCTCACAGTTGAGCATTTCTTACAGGAACTTGGCATTACTGCTTTGCACATAAAGCTTCGGGCTACCGGTGGTAACAAAACCAAAACTCCTGGTCCTGGTGCTCAATCGGCTCTGAGGGCCCTTGCTCGTTCAGGCATGCGAATTGGCCGTATAGGTACACATAAGATTCATACTCACTTCACTAATGTTTGTTAGTTTTTCTTGTATGAAACTGAAGCATTTCATGTGCACCTAAAAATGAAATATAGATGAGTACTCCTCAAAAGCCAATGTGGTTTATAGGCCGGACTTCTCCAATGATCATTTCACTGATTGCTAGTCGAGTATTGGGAATTAAGATCTATACGATATTCCATGTTAGAGGCTTAATGCACAGGATAAACACGGTTCTAGCTCTTATTATTCCTTGTGATCATGCATAGAGTAGTGGTGTATGAATGTCGCACCATTTTGAAGTTGAATATATAGTGTTCCATAGATCTTTGTATTGATTTTTGAAGTTCATGATCTATTGAACCAAACTAGCATGCGTGTGAGATTGTTATTTTTACACAGTTTATTTTGTGTTTCCAGAGGATGTAACTCCAATCCCGACGGACAGCACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGGTTGTAATTCCTAGACCCCTTCCAAAATTTCCTTCTCTTATGGTGGATGTGGTGGCAGTTGAATACCATAGTTTTGAAGAAATTGGATATCTGCTAAATTGCGACGATTATTGATGTTCTGGTTATTGCTTCTATCAACATTTTTGCCATTTTGATTCACGGATCTTCGAAGACAAAGAGTATAGCACACTTTTTGCTGCCTTTTGTTAATTTGATGATATCCAATTTCTCGCTCAAACAAACGCCTCTAAATTCATCACTTCATTATTTGTGATAATGATTGAAAACTGTTATTCTTAACTTTGAATTTAGTCCTCCAAATTGAACTCCCAATTCCAGTGTAGCTTGTTGATGGTTTGTTTGCCTTTATATGGGTTTTTAATTTAAGTTTTTTTTCAATAAAATTATCACTTTTACT

mRNA sequence

TCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTCATGTGACCGATCTATCTGGTAGGGAAACACTTGTCCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCTCCTTATGCTGCCATGCTTGCTGCACAGGACGTTTCTCAAAGATGCAAGGAACTTGGCATTACTGCTTTGCACATAAAGCTTCGGGCTACCGGTGGTAACAAAACCAAAACTCCTGGTCCTGGTGCTCAATCGGCTCTGAGGGCCCTTGCTCGTTCAGGCATGCGAATTGGCCGTATAGAGGATGTAACTCCAATCCCGACGGACAGCACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGGTTGTAATTCCTAGACCCCTTCCAAAATTTCCTTCTCTTATGGTGGATGTGGTGGCAGTTGAATACCATAGTTTTGAAGAAATTGGATATCTGCTAAATTGCGACGATTATTGATGTTCTGGTTATTGCTTCTATCAACATTTTTGCCATTTTGATTCACGGATCTTCGAAGACAAAGAGTATAGCACACTTTTTGCTGCCTTTTGTTAATTTGATGATATCCAATTTCTCGCTCAAACAAACGCCTCTAAATTCATCACTTCATTATTTGTGATAATGATTGAAAACTGTTATTCTTAACTTTGAATTTAGTCCTCCAAATTGAACTCCCAATTCCAGTGTAGCTTGTTGATGGTTTGTTTGCCTTTATATGGGTTTTTAATTTAAGTTTTTTTTCAATAAAATTATCACTTTTACT

Coding sequence (CDS)

TCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTCATGTGACCGATCTATCTGGTAGGGAAACACTTGTCCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCTCCTTATGCTGCCATGCTTGCTGCACAGGACGTTTCTCAAAGATGCAAGGAACTTGGCATTACTGCTTTGCACATAAAGCTTCGGGCTACCGGTGGTAACAAAACCAAAACTCCTGGTCCTGGTGCTCAATCGGCTCTGAGGGCCCTTGCTCGTTCAGGCATGCGAATTGGCCGTATAGAGGATGTAACTCCAATCCCGACGGACAGCACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGGTTGTAA

Protein sequence

SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL

Homology

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BLAST of Carg03658 vs. NCBI nr
Match: KAG7017469.1 (40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 45  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 104

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 105 KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 164

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 165 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 193

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BLAST of Carg03658 vs. NCBI nr
Match: XP_004149195.1 (40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal protein S14-2 [Cucumis sativus] >XP_008442863.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_008442864.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_022144796.1 40S ribosomal protein S14-2 [Momordica charantia] >XP_022934060.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022934073.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022983150.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_022983152.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_023526342.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_023526400.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_038903581.1 40S ribosomal protein S14-2 [Benincasa hispida] >KAA0043860.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >KAG6580714.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia] >KGN59151.1 hypothetical protein Csa_001943 [Cucumis sativus] >KGN59153.1 hypothetical protein Csa_001079 [Cucumis sativus] >TYK25276.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. NCBI nr
Match: KAG7012516.1 (40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 42  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 101

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 102 KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 161

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 162 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 190

[Close]

BLAST of Carg03658 vs. NCBI nr
Match: KAG6580713.1 (Beta-fructofuranosidase, insoluble isoenzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 346 SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 405

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 406 KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 465

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 466 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 494

[Close]

BLAST of Carg03658 vs. NCBI nr
Match: KAG6573353.1 (hypothetical protein SDJN03_27240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 4   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 63

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 64  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 123

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152

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BLAST of Carg03658 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.8e-74
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-73
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 2   RRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 61
           R+KTREPKEE V LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 62  ADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 121
           ADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG
Sbjct: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123

Query: 122 MRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           M+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 124 MKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-73
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.2e-73
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEE V LGP VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Carg03658 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 4.9e-73
Identity = 137/149 (91.95%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy TrEMBL
Match: A0A6J1J4Y9 (40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy TrEMBL
Match: A0A6J1KQN4 (40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 4   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 63

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 64  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 123

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152

[Close]

BLAST of Carg03658 vs. ExPASy TrEMBL
Match: A0A0A0LGP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy TrEMBL
Match: A0A1S3B682 (40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. ExPASy TrEMBL
Match: A0A6J1F6L2 (40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 278.1 bits (710), Expect = 4.1e-75
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 276.9 bits (707), Expect = 9.2e-75
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 275.0 bits (702), Expect = 3.5e-74
Identity = 137/149 (91.95%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           S+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03658 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
           SR+ TR    + V   P         GV H+ ASFN+T + VTD+ GR       G    
Sbjct: 10  SRKNTRSGSRKNVRRIPK--------GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF 69

Query: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
           +  R   +P+AA  AA +  +   + G+    +++        K PG G  +ALRA+ RS
Sbjct: 70  RGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVRI--------KGPGLGRDAALRAIRRS 129

Query: 121 GMRIGRIEDVTPIPTDSTRRKGGRR 146
           G+ +  + DVTP+P +  R    RR
Sbjct: 130 GILLSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Carg03658 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017469.1	2.3e-75	100.00	40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_004149195.1	2.3e-75	100.00	40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal prot...	[more]
KAG7012516.1	2.3e-75	100.00	40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6580713.1	2.3e-75	100.00	Beta-fructofuranosidase, insoluble isoenzyme 1, partial [Cucurbita argyrosperma ...	[more]
KAG6573353.1	2.3e-75	100.00	hypothetical protein SDJN03_27240, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg03658 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAX6	5.8e-74	93.29	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P19951	1.0e-73	95.27	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
P42036	1.3e-73	92.62	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19950	2.2e-73	95.30	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	4.9e-73	91.95	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]

BLAST of Carg03658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4Y9	1.1e-75	100.00	40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=...	[more]
A0A6J1KQN4	1.1e-75	100.00	40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=...	[more]
A0A0A0LGP6	1.1e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1	[more]
A0A1S3B682	1.1e-75	100.00	40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1	[more]
A0A6J1F6L2	1.1e-75	100.00	40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 S...	[more]

BLAST of Carg03658 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11510.1	4.1e-75	93.29	Ribosomal protein S11 family protein	[more]
AT3G52580.1	9.2e-75	92.62	Ribosomal protein S11 family protein	[more]
AT2G36160.1	3.5e-74	91.95	Ribosomal protein S11 family protein	[more]
ATCG00750.1	2.1e-10	31.72	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..149 e-value: 3.2E-70 score: 236.9
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 27..145 e-value: 1.0E-47 score: 161.1
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 1..146 e-value: 3.9E-37 score: 125.1
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..149
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 2..146 score: 20.885508
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 1..149
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 22..147
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 114..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03658-RA	Carg03658-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome