Carg03615 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03615
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL70-like
Location	Carg_Chr14: 1655459 .. 1655959 (+)
RNA-Seq Expression	Carg03615
Synteny	Carg03615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGTCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCAAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTAAGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCCGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGCGTTGA

mRNA sequence

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGTCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCAAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTAAGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCCGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGCGTTGA

Coding sequence (CDS)

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGTCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCAAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTAAGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCCGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGCGTTGA

Protein sequence

MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRR

Homology

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BLAST of Carg03615 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 3.7e-90
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRR 167
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRR 166

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BLAST of Carg03615 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 4.0e-89
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD IVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

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BLAST of Carg03615 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 6.9e-89
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Carg03615 vs. NCBI nr
Match: XP_022983126.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 9.9e-88
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQ NRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

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BLAST of Carg03615 vs. NCBI nr
Match: KGN59365.2 (hypothetical protein Csa_002562 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 6.3e-66
Identity = 128/165 (77.58%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEV+PLA GR
Sbjct: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGR 161

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BLAST of Carg03615 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-42
Identity = 86/157 (54.78%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGER-----RDVIVD 72
           T ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   R       VI+D
Sbjct: 58  TDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIID 117

Query: 73  FGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHS 132
             PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +LR LPDC H+FH 
Sbjct: 118 VVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHL 177

Query: 133 GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
            CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 178 KCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

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BLAST of Carg03615 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-38
Identity = 79/174 (45.40%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PG 72
           T  +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG
Sbjct: 17  TDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPG 76

Query: 73  ERR--------DVIVDFGPGLEDEAINEYPKILYSEKKLEGKL--ESAAASGCSICLGDY 132
           + R        D +V    GL +E I  +PK+ Y E ++   L  ES+  S CSICL DY
Sbjct: 77  QERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADY 136

Query: 133 KNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           K  D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 137 KKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Carg03615 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R   ++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKLESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

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BLAST of Carg03615 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-22
Identity = 53/149 (35.57%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     DV++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   +L       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg03615 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRRPGERRDVI--------- 80
           Y + I++G L L++T+ +++Y+C R        +    N      +R  ++         
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  --VDFG----PGLEDEAINEYPKILYSEKKLEGKLE-------SAAASGCSICLGDYKNE 140
             ++ G     GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

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BLAST of Carg03615 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD IVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Carg03615 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.8e-88
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQ NRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Carg03615 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-66
Identity = 128/165 (77.58%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEV+PLA GR
Sbjct: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGR 161

[Close]

BLAST of Carg03615 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.8e-66
Identity = 127/165 (76.97%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+ + SGG    G++G+FP+IVGISVG+LFLLTT+TI TYLCTRTTVPQPNRR +   R
Sbjct: 1   MNSPSDSGG----GDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAAA+GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GH+FH  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GR
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGR 161

[Close]

BLAST of Carg03615 vs. ExPASy TrEMBL
Match: A0A7N0V3V8 (RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 93/165 (56.36%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNN+T SG    +  VG F Y +GIS+G+L L+TT+TIA+Y C RT    P   R P   
Sbjct: 1   MNNTTDSGTFFGSYAVGGFSYGIGISIGILLLITTITIASYFCARTATGSPQGARSPPSA 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
            ++++D   G+++E I  YPK+LYSE + +GK  +  A+ CSICL DYK  D LR+LPDC
Sbjct: 61  HEIVLDV--GIDEETIETYPKLLYSEARRQGKASTTTATCCSICLADYKGPDALRMLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GH+FH GC+DPWLRL+P+CPVCRTSP+P+PLSTPLAEVVPLA+ R
Sbjct: 121 GHLFHVGCVDPWLRLHPTCPVCRTSPLPSPLSTPLAEVVPLASRR 163

[Close]

BLAST of Carg03615 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-43
Identity = 86/157 (54.78%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGER-----RDVIVD 72
           T ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   R       VI+D
Sbjct: 58  TDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIID 117

Query: 73  FGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHS 132
             PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +LR LPDC H+FH 
Sbjct: 118 VVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHL 177

Query: 133 GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
            CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 178 KCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Carg03615 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.0e-39
Identity = 79/174 (45.40%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PG 72
           T  +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG
Sbjct: 17  TDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPG 76

Query: 73  ERR--------DVIVDFGPGLEDEAINEYPKILYSEKKLEGKL--ESAAASGCSICLGDY 132
           + R        D +V    GL +E I  +PK+ Y E ++   L  ES+  S CSICL DY
Sbjct: 77  QERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADY 136

Query: 133 KNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           K  D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 137 KKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Carg03615 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R   ++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKLESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Carg03615 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-23
Identity = 53/149 (35.57%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     DV++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   +L       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg03615 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRRPGERRDVI--------- 80
           Y + I++G L L++T+ +++Y+C R        +    N      +R  ++         
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  --VDFG----PGLEDEAINEYPKILYSEKKLEGKLE-------SAAASGCSICLGDYKNE 140
             ++ G     GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Carg03615 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580759.1	3.7e-90	100.00	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022935317.1	4.0e-89	99.39	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_023528902.1	6.9e-89	98.79	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
XP_022983126.1	9.9e-88	98.18	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
KGN59365.2	6.3e-66	77.58	hypothetical protein Csa_002562 [Cucumis sativus]	[more]

BLAST of Carg03615 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	2.3e-42	54.78	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	9.8e-38	45.40	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	3.0e-26	38.46	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	4.4e-22	35.57	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	1.4e-20	34.29	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Carg03615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F576	2.0e-89	99.39	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	4.8e-88	98.18	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A0A0LEU3	3.0e-66	77.58	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A5A7TRH5	6.8e-66	76.97	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A7N0V3V8	3.7e-48	56.36	RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Carg03615 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	1.6e-43	54.78	RING/U-box superfamily protein	[more]
AT5G06490.1	7.0e-39	45.40	RING/U-box superfamily protein	[more]
AT2G46160.1	2.1e-27	38.46	RING/U-box superfamily protein	[more]
AT5G07040.1	3.1e-23	35.57	RING/U-box superfamily protein	[more]
AT3G61550.1	1.0e-21	34.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 1.0E-8 score: 45.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..143 e-value: 2.4E-14 score: 53.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.917115
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..148 e-value: 1.3E-21 score: 78.0
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 9..164
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 9..164
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..143 e-value: 1.19018E-20 score: 77.7273
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 75..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03615-RA	Carg03615-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding