Carg03443 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03443
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 1292274 .. 1292888 (-)
RNA-Seq ExpressionCarg03443
SyntenyCarg03443
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAAAGCTATTCGGGTCCCATGCCTGTTCGCACGTGCCTCGCACTACCTCTGCGCTTTTCCTTCGACGAATCTCAGCCGTCCATTATCGGAGATCATATTTGCTCGCCCTCCCTCCAAATTCCCTTTCTACACTTTCTTTCTTTTTCCTCCGAGAGAGTTGGGAAAGAAAAGCTTCAGACTGTCGCTGGAAAAATCCGCAACCCTAATTCGAATTCTGCAGGTCGTTGAACCAGAGAAATCAAAGGTTTGATCCTTCGTTTTTTTTTTTTTTTAATTCTCTTGGGAAACAGGTTTTGTAGAATGTCATTTCCAGTATTTTTTCCATCTTTCTTACCGCCGAATCTCTCTGTTTTCTAATTTAATCGCCAGTTTCTCGCTTGATTCTTTCTCCTAATTTTTTCCGGTTTGTTTTCTCTTCATCTAATTTGTTATTCCTCTTGCTTGGTGTGAAGTACAGTGTTTTTTTTTTTTTTTTTTTTTTTTGTCTCGATAGTTGTTAGAACTTCATTTCTTTTGAATCATCTGGATATAGATGGGGATCCTTCTCTTTTTTTAGAAATTGTGTTCTTTGTTAACGTTCTGATTTGGGATGTGAACGTAGAAATATAA

mRNA sequence

ATGACCAAAAGCTATTCGGGTCCCATGCCTGTTCGCACGTGCCTCGCACTACCTCTGCGCTTTTCCTTCGACGAATCTCAGCCGTCCATTATCGGAGATCATATTTGCTCGCCCTCCCTCCAAATTCCCTTTCTACACTTTCTTTCTTTTTCCTCCGAGAGAGTTGGGAAAGAAAAGCTTCAGACTGTCGCTGGAAAAATCCGCAACCCTAATTCGAATTCTGCAGAAATATAA

Coding sequence (CDS)

ATGACCAAAAGCTATTCGGGTCCCATGCCTGTTCGCACGTGCCTCGCACTACCTCTGCGCTTTTCCTTCGACGAATCTCAGCCGTCCATTATCGGAGATCATATTTGCTCGCCCTCCCTCCAAATTCCCTTTCTACACTTTCTTTCTTTTTCCTCCGAGAGAGTTGGGAAAGAAAAGCTTCAGACTGTCGCTGGAAAAATCCGCAACCCTAATTCGAATTCTGCAGAAATATAA

Protein sequence

MTKSYSGPMPVRTCLALPLRFSFDESQPSIIGDHICSPSLQIPFLHFLSFSSERVGKEKLQTVAGKIRNPNSNSAEI
Homology
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BLAST of Carg03443 vs. NCBI nr
Match: KAG7010425.1 (hypothetical protein SDJN02_27218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MTKSYSGPMPVRTCLALPLRFSFDESQPSIIGDHICSPSLQIPFLHFLSFSSERVGKEKL 60
          MTKSYSGPMPVRTCLALPLRFSFDESQPSIIGDHICSPSLQIPFLHFLSFSSERVGKEKL
Sbjct: 1  MTKSYSGPMPVRTCLALPLRFSFDESQPSIIGDHICSPSLQIPFLHFLSFSSERVGKEKL 60

Query: 61 QTVAGKIRNPNSNSAEI 78
          QTVAGKIRNPNSNSAEI
Sbjct: 61 QTVAGKIRNPNSNSAEI 77

The following BLAST results are available for this feature:
BLAST of Carg03443 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010425.11.6e-35100.00hypothetical protein SDJN02_27218, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03443 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03443 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03443 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03443-RACarg03443-RAmRNA