Carg03011 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03011
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIA subunit 2
Location	Carg_Chr09: 2981286 .. 2983097 (-)
RNA-Seq Expression	Carg03011
Synteny	Carg03011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTGTAACTACAATTCCTTGCTTGTACTCGCTCTTTAATTTTATTTCGTTCCTTTTAGAATTGATCTCTCGCTTTTATTTCGAAGATTTTGCCAGCTTTCTCGAATTCTGATGCTATGTTTCAAATTTTTCTGAAGATTTTGTCAATTCTGGATGTGTATTTTTTGACTAAATTTGATATCTTAGCTAAAGAGCTTCCATATTTTTCAGATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGGTACAGTCAAAGCTGTTTGAAGATTTTATATATTTTTGGATTTGTGTACGGAATTAAGGTTTAAGGTCTTGTTTGATTTAATTTCCTTCCACTTTTGGCTTTTGCAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCCTTTTTTTCTTTTTTCTGGCTTATGAATTTGGCGAATCTTTTAATGCAGAGATTTATGTTGCTAAGTAAAGTCAACATTATAAACTTGAAACGTGATTTAATAACTGATGAGAGGAATTGGTTGTGTCTGCCTGTTCTGAGATTGCTCTGTTTGTGCTGTAGTGCACGTCTAGCCTTGAGCCAAATTGTTATGTCGGCAACACATCCATATGTCGAATGTGTAGTAGAATATTTTTCCGTGGTCTTTGGTTTCATATACAAATGCACAGCATACAAACATTTGTATTTGAAACGTGGAAGTTTCGTTGGTGGAACTTTTCATTAGGTTACTTGTGTTCATTCCATTCCTTGTTTTGTTTTCCCCTGATTCTTGAAACGTTTTCAGTATAAAATATTGCACATTGAATAAGTCTCTCTGGACTGAACTTCGTTACTTTGTGTTTTTGGAATCTGGCGATAAAGTAATCGATGTCATTAGGGATATGGCCTTGCTACAATATCAGGTTCCACAATGAGTCTTAACGACTATTCAATCGGAAGGATGTCGATTTTCTCATGATACTCGGTTGAAAGTTGACAGTGCATAGATTATATGATAAGTTTTCTTTAAAAGAAATGAAGAATTTACAATCACACAGCAATCTTTAAGGTGTTATATAGTCATCGGGCCTGGCGTTCTTTTAGATCTTCCCAGCCATTTTTTTTGACTCTTTCGTTCATAACACCAATCAATTTGTTTTTGCCAAGTGAATGTATTTCATAACGCCCACACCAATCACACCTATTCTGTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

mRNA sequence

AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ

Homology

[Close]

BLAST of Carg03011 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >KAG7024584.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. NCBI nr
Match: KAG6608125.1 (Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 617 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 676

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 677 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 722

[Close]

BLAST of Carg03011 vs. NCBI nr
Match: KAG7031763.1 (Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.1e-50
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 52/99 (52.53%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of Carg03011 vs. ExPASy Swiss-Prot
Match: Q90YG6 (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss OX=8022 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-25
Identity = 50/99 (50.51%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           ++LYR +T+G  L E+LDE++Q   ++P+LA+QVL+QFDK++  AL ++V+++V+ KG L
Sbjct: 3   YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
           +TYRFCDNVWTF+L D  F+       V ++KIVACD K
Sbjct: 63  NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101

[Close]

BLAST of Carg03011 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. ExPASy TrEMBL
Match: A0A6J1FTM1 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111446721 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.7e-51
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of Carg03011 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936677.1	1.6e-51	100.00	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]
XP_022941425.1	3.6e-51	99.06	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]
KAG6608125.1	3.6e-51	99.06	Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma s...	[more]
KAG7031763.1	4.8e-51	98.11	Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. arg...	[more]
XP_022133819.1	1.8e-50	98.11	transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382...	[more]

BLAST of Carg03011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	7.1e-50	91.51	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	3.9e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	3.9e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
O74948	1.9e-26	52.53	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
Q90YG6	4.7e-25	50.51	Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss OX=8022 GN=...	[more]

BLAST of Carg03011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F935	7.9e-52	100.00	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	7.9e-52	100.00	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1J100	1.8e-51	99.06	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FTM1	1.8e-51	99.06	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1BWA2	8.7e-51	98.11	Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Carg03011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	5.1e-51	91.51	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	5.1e-51	91.51	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 55..105 e-value: 4.7E-23 score: 82.8
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..102
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 60..101 e-value: 7.3E-22 score: 77.3
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 57..102 e-value: 1.27192E-23 score: 83.4511
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 e-value: 1.1E-22 score: 79.8
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..49 e-value: 2.67382E-22 score: 79.9172
IPR003194	Transcription initiation factor IIA, gamma subunit	PIRSF	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 e-value: 2.6E-49 score: 163.9
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 3..54 e-value: 3.1E-24 score: 86.6
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03011-RA	Carg03011-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity