Carg02990 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02990
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Carg_Chr09: 2848180 .. 2851206 (-)
RNA-Seq Expression	Carg02990
Synteny	Carg02990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAAAAAAATAAAATAAAAAATATATATGGCTTAGTGCCGCACCCGCTAAAATATCCAGATATTCCATCCGAAACGTCGTCGTTTTAAGCCTTTTCTGAGCTCCCTTATCCAATATTAATAACCCACGGCGTAGCTCTGTGTTGCTTTTCAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGGTATGTAACTTCATTTTATTTCTATTGCCATTTCTGTTTGACGCATTTGGTTTATTGCGGATTTATGATCGGTCTTTTTCTCTCAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGTAAGCAGGATGTCGTTTTTCTTAGCTTGATCATTTTTCGTTTGTCTCATTGTGTTCAAGTTCGTACCCGAGGCTTAGAACAGTGTTTACCTTTCACCATGGAAGAATAGTCGTAATAGCAATTGAATGCGTTTGAATTAAGGAATAGTTTGATTTGCTTGTGTGAGATGGAACGTGAGATCCCACTTCGGTTGGAGAGGGGAACAAACATTCTTTGTAAGGGTGTTGAAACCTCTCCACGCGTTTTAAAAACCGTGAGACTGACGGCAATACGTAACGGAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAGCGGACAATATCCACTAGCGGTGGGCTTGGACTGTTACAAAAAACGGACAATATTCACTAGCGGTGGGCTTGGACTGTTACAAATAGTATCAGAGCCCGGGTGGTGTGCCAGTGAGGACGATAACTCCCAAGGGGGTGGGTTGTGAGATCCCACATCTGTTGGAGAGGGAAACGAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAATAGAAGTGTTTTAAAAATTGTGAGGTTGACGGCGATACGTAACGGGCCAAAGCGGACAATATCTACTAGCGATGGGCTTGGGCTGTTACATGGAAAAATTGATGAACCGGAAGAACTCAATTATAAATTTGCATCCTGCTTGTGTCCAGTGTGTTGCAGTTTCTTTTAAATTTTGCTTCTTTAGTGCTTTTGAATATATTACAAGGGAACAAGTTATTGACTAAAATTTTTCAGTTCTCCTTGTCACTATGGGTTGAAGCAAAGTACATGGCCTTTCCATTCATTTCAAAACTTTTATGATGAATCTTCTGATGCATTTGGCTCTCACTCCCAATTATTGCAGGTGTTTATGGGCAATGCCCATGTCCTTTCGAACTCTTGTTGGCTTTTTATTGAATGAAATAGTTCACATGAATGCAGGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGGTAATTTCAGTATATTGCTACCACAATTTTTAAATGAATAGCCATAGAATCATTAAAATGTGAGTATCAGCATTCTTATGGTTCTTCATCTGCTGAAATGCAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAAATTCAGAAGCCTCTCACTGGAGGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTTTCTTGTTCTCTATCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAACACATCACTTTCCCTTTTCTTTTACCTATAAATCTCCTACCTCTAATGTTTAGATGATTCAAAGTTGGATACCCCAACAAAAAACGCTCATTAGATCATTTACTGTATCCTTTTCTCTATATGAAGTCTTAATGGTGATTTATCAATGCACGTTAATGTAATTGAGTTTAGCATTTAGTTAATGAATGAATACAAATGAACTAGGTTTTATAGTTGAATTGGCATCTTATGACTGTTTAGGTTCGAGGGGAGTTATTCCATTGCATAGTCACAGTATTGTATTGATTCAAGAACAAAGGACAATCAGTGCAATTTGATCCATGCGTGTTTGCTTTACATAGATAGGTGGGTGGAGAAAGCAATCCCAAAATGAATTTTTGTTCATGTGTACTATATTGCATGATCTCAGCATTGTACTTGCATTCACATTCATGTGTACTATATTTCATAATTGAGAACATTGAAGGACAACTTGTACAATTTGATTCTTTTTCTTTAAATTGACAAGTGTTTGGTGGGGTGGGGAGGAACAATTCCTCCATCTTTTCTCATTCATTTGTGCTATATTTTGCATAATCACAGGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAG

mRNA sequence

TAGAAAAAAAATAAAATAAAAAATATATATGGCTTAGTGCCGCACCCGCTAAAATATCCAGATATTCCATCCGAAACGTCGTCGTTTTAAGCCTTTTCTGAGCTCCCTTATCCAATATTAATAACCCACGGCGTAGCTCTGTGTTGCTTTTCAGACCAGGAGTGAGCAGAGTGCTGTGAGCGCCGGCCATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAAATTCAGAAGCCTCTCACTGGAGGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTTTCTTGTTCTCTATCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAACACATCACTTTCCCTTTTCTTTTACCTATAAATCTCCTACCTCTAATGTTTAGATGATTCAAAGTTGGATACCCCAACAAAAAACGCTCATTAGATCATTTACTGTATCCTTTTCTCTATATGAAGTCTTAATGGTGATTTATCAATGCACGTTAATGTAATTGAGTTTAGCATTTAGTTAATGAATGAATACAAATGAACTAGGTTTTATAGTTGAATTGGCATCTTATGACTGTTTAGGTTCGAGGGGAGTTATTCCATTGCATAGTCACAGTATTGTATTGATTCAAGAACAAAGGACAATCAGTGCAATTTGATCCATGCGTGTTTGCTTTACATAGATAGGTGGGTGGAGAAAGCAATCCCAAAATGAATTTTTGTTCATGTGTACTATATTGCATGATCTCAGCATTGTACTTGCATTCACATTCATGTGTACTATATTTCATAATTGAGAACATTGAAGGACAACTTGTACAATTTGATTCTTTTTCTTTAAATTGACAAGTGTTTGGTGGGGTGGGGAGGAACAATTCCTCCATCTTTTCTCATTCATTTGTGCTATATTTTGCATAATCACAGGGTTATACTGAATCGATAACATTGGAGAACAGTCTGCCATTTGTTTGTTTAGATGATTCATTTCAATGCTTTAGGAAATCTAGTGCTTTTGAG

Coding sequence (CDS)

ATGGATCTGGTTCGTCTTCCTTGTTCTTCCTCCTCCTTATTCCTTCGTTCTAATCAACAGAATCTGGTGTTTATCTCGCCTCTCTCATGGCCGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAGCTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGGTTGCGAGCTCTTCTTCTGATGCTGAGGAATTTTCTCGAAACAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCGAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCGAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCCGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGCGTGGAGCTAGCCAGTGCTGCTGCTGAAGTTTAA

Protein sequence

MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAEV

Homology

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: KAG7024563.1 (RNA-binding protein CP33, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 581.3 bits (1497), Expect = 5.0e-162
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 573.2 bits (1476), Expect = 1.4e-159
Identity = 299/301 (99.34%), Postives = 299/301 (99.34%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSSLFLRSNQQNLVFISPLS PQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_023535968.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.2 bits (1463), Expect = 4.3e-158
Identity = 296/301 (98.34%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSSLFLRSNQQNLVFISPLS PQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTST+GVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTEGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_022975867.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 558.5 bits (1438), Expect = 3.4e-155
Identity = 291/301 (96.68%), Postives = 294/301 (97.67%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSS LFLRSNQQNLVFI+PLS  QNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRTRKFVFQLASTSQDDA+ASSSSDAEEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEE SQS+DTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 507.7 bits (1306), Expect = 7.0e-140
Identity = 263/301 (87.38%), Postives = 278/301 (92.36%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSS FLRS QQ+L+F++PLS PQNPSY  NGD  LS+SRSS SL ST +GH
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIR KRT KFVFQ ASTSQD+AVASS SD+EEFS+ RLLAQNVPW STPEDIRSLF
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STD VELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTDDVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 84/303 (27.72%), Postives = 150/303 (49.50%), Query Frame = 0


Query: 33  NPSYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKF--VFQLASTSQDDAVASS 92
           NP  S++ + +L    +  S        NPL      R  +F    +  ++S DD + +S
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  SSDAEEF----------------------SRNRLLAQNVPWDSTPEDIRSLFEKYGTVVD 152
             + EE                          RL   N+P+  T  ++  +F + GTVVD
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKV----KKEKP 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S + GGRT+K+N+ +V    + E  
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 SPPVKPNPVTF-----NLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
              ++ N  ++      ++  NL ++  ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKTKKDAEAAISEFQGKNFMGRSLRV----ARSKQFVKLPSEEKSQSEDTSTDGVE 297
           GF++F++ ++ ++A++   G    GR+LR+     R K  V  PS E+ ++E+ S +  E
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNE 324

[Close]

BLAST of Carg02990 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 64/200 (32.00%), Postives = 105/200 (52.50%), Query Frame = 0


Query: 74  FVFQLASTSQDDAVASSSSDAEEFSR----NRLLAQNVPWDSTPEDIRSLFEKYGTVVDV 133
           FV  +    + D V  +  + EEF       +L   N+P+D   E +  LFE+ G VV++
Sbjct: 107 FVEAVGDAGESDEV-EADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEI 166

Query: 134 ELSMYNK--IRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVK 193
              +YN+   ++RG  FVTM + EEA  AV     Y+  GR L +N A  + E+P  P +
Sbjct: 167 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPR 226

Query: 194 PNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKD 253
               ++ ++V N+P+      L + F S  G VVSA++++     RS G+GFV   ++ +
Sbjct: 227 TFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 286

Query: 254 AEAAISEFQGKNFMGRSLRV 268
              AI+   G++  GR++RV
Sbjct: 287 MSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of Carg02990 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-20
Identity = 61/188 (32.45%), Postives = 102/188 (54.26%), Query Frame = 0


Query: 88  ASSSSDAEEFSRN-RLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRGLAF 147
           A  + + +E S + +L   N+P+D   E +  LF++ G VV++   +YN+   R+RG  F
Sbjct: 84  AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGF 143

Query: 148 VTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDA 207
           VTM + EEA  AV     Y+  GR L +N A  +  +P    +    T+ ++V N+P+D 
Sbjct: 144 VTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDI 203

Query: 208 RAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRS 267
               L + F S  G VVSA+++F     RS G+GFV   ++ +   AI+   G+   GR+
Sbjct: 204 DDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 263

Query: 268 LRVARSKQ 273
           +RV  +++
Sbjct: 264 IRVNAAEE 269

[Close]

BLAST of Carg02990 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.8e-20
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 84  DDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNK--IRNRG 143
           + AV+  +   E     +L   N+ +D   + +  LFE+ GTV   E+ +YN+   ++RG
Sbjct: 134 EGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRG 193

Query: 144 LAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLP 203
             FVTM S +EA  AV     Y+  GR L +N A  +  +P    +     F ++V NLP
Sbjct: 194 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 253

Query: 204 FDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFM 263
           +D     L + F S  G VV A++++     RS G+GFV      +   AIS   G+N  
Sbjct: 254 WDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 313

Query: 264 GRSLRV 268
           GR++RV
Sbjct: 314 GRAIRV 317

[Close]

BLAST of Carg02990 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-18
Identity = 96/329 (29.18%), Postives = 161/329 (48.94%), Query Frame = 0


Query: 8   CSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSS----SLFSTPL-GHNP 67
           C S +    ++  +L+++    + Q P +S +    LSLS  ++     + ST L  H P
Sbjct: 5   CFSFAATASTSSTSLLYL----FTQKPKFSVD---HLSLSTYNTHFNFKINSTKLKAHFP 64

Query: 68  LASIRAKRTRKFVFQLASTS---------QDDAVASSSSDAEEFSR------------NR 127
           ++S+   R+  F+   AS S          ++ VA S+ + EE                R
Sbjct: 65  ISSL--YRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGR 124

Query: 128 LLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKI--RNRGLAFVTMGSPEEALAAVNN 187
           L   N+P+  T   +  +F + GTV +VE+ +Y+++  R+RG AFVTMGS EEA  A+  
Sbjct: 125 LYVGNLPFSMTSSQLSEIFAEAGTVANVEI-VYDRVTDRSRGFAFVTMGSVEEAKEAIRL 184

Query: 188 LESYEFGGRTLKLNYAKV----KKEKPSPPVKPNPVTF-----NLFVANLPFDARAKDLR 247
            +  + GGRT+K+N+ +V    ++E  S  ++     F      L+VANL +   ++ LR
Sbjct: 185 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 244

Query: 248 EFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLR--VA 298
           + F    G  +SA++I+  +  RS G+GF+ F + +   +A+         GR LR  VA
Sbjct: 245 DAFADQPG-FMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 304

[Close]

BLAST of Carg02990 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.5e-160
Identity = 299/301 (99.34%), Postives = 299/301 (99.34%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSSSLFLRSNQQNLVFISPLS PQNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. ExPASy TrEMBL
Match: A0A6J1IE80 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476441 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.7e-155
Identity = 291/301 (96.68%), Postives = 294/301 (97.67%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M LVRLPCSSS LFLRSNQQNLVFI+PLS  QNPSYSNNGDIKLSLSRSSSSLFSTPLGH
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SIRAKRTRKFVFQLASTSQDDA+ASSSSDAEEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEE SQS+DTSTDGVELASAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.0e-136
Identity = 258/301 (85.71%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS Q + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.0e-136
Identity = 258/301 (85.71%), Postives = 272/301 (90.37%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS Q + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of Carg02990 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 4.0e-133
Identity = 254/301 (84.39%), Postives = 270/301 (89.70%), Query Frame = 0


Query: 1   MDLVRLPCSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60
           M  VRLPCSSSS  LRS   + +F++PLS  QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120
           +PL SIRAKRT  FVFQ ASTSQD+AV SS SD EEFS+ RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPFDARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300
           AFKTKKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEK QSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

Query: 301 V 302
           V
Sbjct: 301 V 300

[Close]

BLAST of Carg02990 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-71
Identity = 161/307 (52.44%), Postives = 211/307 (68.73%), Query Frame = 0


Query: 1   MDLVRLP-CSSSSLFLRSNQQNLVFISPLSWPQNPSYSNNGDIKLSLSRSSSSLFSTPLG 60
           M L+RLP  S   L  +SNQ+N           N +++N+     SLS S+ SL      
Sbjct: 1   MALLRLPGISLQILGHKSNQKNP--------NPNVAFTNH-----SLSLSTPSLCRLHRH 60

Query: 61  HNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDA-------EEFSRNRLLAQNVPWDST 120
                SI AK +R      ++T+Q+  + SSSS +       EE S+ RL+AQNVPW ST
Sbjct: 61  ATFPDSIPAK-SRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTST 120

Query: 121 PEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKL 180
           PEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  A+ +LES E+ GR LK+
Sbjct: 121 PEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKV 180

Query: 181 NYAKVKKEKP-SPPVKPNPV-TFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHEN 240
           +YAK KK+K  +P   P+PV TFNLFVANL F+ARAK L+EFFD+ +GNVVS ++IFHEN
Sbjct: 181 DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHEN 240

Query: 241 PRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKL-------PSEEKSQ 291
           PRRSSGYGFV+FKTKK AEAA+ EFQGK+F+GR +R+A+SKQFVKL       P EE+++
Sbjct: 241 PRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAE 293

[Close]

BLAST of Carg02990 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.6e-68
Identity = 129/202 (63.86%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 98  SRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAV 157
           S+ RL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  A+
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 158 NNLESYEFGGRTLKLNYAKVKKEKP-SPPVKPNPV-TFNLFVANLPFDARAKDLREFFDS 217
            +LES E+ GR LK++YAK KK+K  +P   P+PV TFNLFVANL F+ARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 218 GSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVK 277
            +GNVVS ++IFHENPRRSSGYGFV+FKTKK AEAA+ EFQGK+F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 278 L-------PSEEKSQSEDTSTD 291
           L       P EE+++ E + ++
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of Carg02990 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.2 bits (339), Expect = 8.8e-32
Identity = 96/288 (33.33%), Postives = 149/288 (51.74%), Query Frame = 0


Query: 35  SYSNNGDIKLSLSRSSSSLFST------PLGHNPLASIR--AKRTRKFVFQLASTSQDDA 94
           S S++       S+ SSSL  T      P   +P+ S+R  +  +R+ V  L S ++ + 
Sbjct: 14  SSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRRLVSVLCSVAEKET 73

Query: 95  VASSSSDAEEFS--------RNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIR 154
            A   +  EE +        + +L   N+PW  +  DI  LF + GTV +VE+      +
Sbjct: 74  SADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGK 133

Query: 155 NRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYA-KVKKEKPS-----PPVKPNPVT 214
           NRG AFVTM S EEA AA++  ++++  GR + +++A + KK  P      P   P    
Sbjct: 134 NRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTR 193

Query: 215 FNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAI 274
             L+V+NL + AR+  LRE F +   N VSA+++F +   RSSGYGFV+F T+++AE AI
Sbjct: 194 HKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAI 253

Query: 275 SEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 301
           ++  GK  MGR          + L    +S SE    D VE  +A+ +
Sbjct: 254 TKLNGKEIMGRP---------ITLKFSLRSASESEDGDSVEANNASED 292

[Close]

BLAST of Carg02990 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-23
Identity = 84/303 (27.72%), Postives = 150/303 (49.50%), Query Frame = 0


Query: 33  NPSYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKF--VFQLASTSQDDAVASS 92
           NP  S++ + +L    +  S        NPL      R  +F    +  ++S DD + +S
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  SSDAEEF----------------------SRNRLLAQNVPWDSTPEDIRSLFEKYGTVVD 152
             + EE                          RL   N+P+  T  ++  +F + GTVVD
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKV----KKEKP 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S + GGRT+K+N+ +V    + E  
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 SPPVKPNPVTF-----NLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
              ++ N  ++      ++  NL ++  ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKTKKDAEAAISEFQGKNFMGRSLRV----ARSKQFVKLPSEEKSQSEDTSTDGVE 297
           GF++F++ ++ ++A++   G    GR+LR+     R K  V  PS E+ ++E+ S +  E
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNE 324

[Close]

BLAST of Carg02990 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-19
Identity = 74/233 (31.76%), Postives = 118/233 (50.64%), Query Frame = 0


Query: 54  FSTPLGHNPLASIRAKRTRKF-------VFQLASTSQDDAVASSSSDAEEFSRNRLLAQN 113
           FSTP    PL       +R+F         +L    +DD  AS+  D       +L   N
Sbjct: 36  FSTP---KPLLISSRSCSRRFRVLSETITVKLEEEEKDDG-ASAVLDPPAAVNTKLYFGN 95

Query: 114 VPWDSTPEDIRSLFEKYGTVVDVELSMYNKI--RNRGLAFVTMGSPEEALAAVNNLESYE 173
           +P++     +  + + +     VE+ +YN+   ++RG AFVTM + E+    ++NL+  E
Sbjct: 96  LPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTE 155

Query: 174 FGGRTLKLNYAKVKKEKPSPPVKP-NPVT-FNLFVANLPFDARAKDLREFFDSGSGNVVS 233
           + GR LK+N+A    +KP P  +P  P T   LFV NL +   ++ L   F    G+VV 
Sbjct: 156 YLGRALKVNFA----DKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE-CGDVVG 215

Query: 234 AQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRV--ARSKQF 274
           A+++F  +  RS GYGFV + +K + E A+    G    GR++RV  A+ K+F
Sbjct: 216 ARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of Carg02990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024563.1	5.0e-162	100.00	RNA-binding protein CP33, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022937168.1	1.4e-159	99.34	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 ...	[more]
XP_023535968.1	4.3e-158	98.34	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022975867.1	3.4e-155	96.68	28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]
XP_038897887.1	7.0e-140	87.38	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg02990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	4.7e-22	27.72	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19683	2.6e-20	32.00	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	4.4e-20	32.45	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q04836	9.8e-20	32.80	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19684	2.4e-18	29.18	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of Carg02990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF97	6.5e-160	99.34	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IE80	1.7e-155	96.68	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]
A0A5A7TBD1	3.0e-136	85.71	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	3.0e-136	85.71	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	4.0e-133	84.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]

BLAST of Carg02990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	3.3e-71	52.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	2.6e-68	63.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	8.8e-32	33.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	3.3e-23	27.72	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	6.5e-19	31.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..268 e-value: 3.2E-22 score: 89.8 coord: 101..173 e-value: 2.3E-17 score: 73.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 105..171 e-value: 1.6E-14 score: 53.5 coord: 195..266 e-value: 9.3E-18 score: 63.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..272 score: 18.239782
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..177 score: 16.773018
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 182..293 e-value: 1.3E-23 score: 85.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..181 e-value: 8.4E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..301
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 5..291
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 5..291
None	No IPR available	CDD	cd00590	RRM_SF	coord: 106..173 e-value: 7.59148E-19 score: 76.9601
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 89..184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 182..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02990-RA	Carg02990-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding