Carg02902 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02902
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	polyadenylate-binding protein-interacting protein 5-like
Location	Carg_Chr09: 2332184 .. 2333996 (-)
RNA-Seq Expression	Carg02902
Synteny	Carg02902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTTCTTTCTGCAATTGTGAAGTGATGAAATCATTCTTAGTAAATCTTAGCTTTGGATACGTAGACTTTCTTCTTTAAATCTTCGTTTTTAAGTGGTTTGCTGTATAGATTTAATTCTTCTCATGTTTCCATGGTCTGATCTTTGCTTTTCTTGGAGTTCGTTTGAACGCATAGATGTATTAATATTTTCTTTCTGATCATCCGAATTATGCGTCCAATTGCTAAAAAATTTCATTGCTGTGAAATTGTTAGCGTACAATGTGTTGAATTGTCTTGAGTTTTCTTGATCTGAGTGTTCATTGCTCCTTGGAATTATTTATACGAAATGCTTGCAGAACTTGAAGGCTATGCCGACTTGATGTTGCATTTCATGCCAAGTGCTATGAGTTTTGAACTTCTTCATTCTTCCATCGCATTCAATCATTTCTTTGAATCATTTCCGCATCTGTTAGCATTTCATACAATTGTTTTACAGGAAGGACAGGACGAGATAGCAATAATTTCTGCATCTGGTGCAATGAAGCCGCACGGATCATCTTTGAACCCGTATGCAACATCCTACATTCCAATCTCCAAGAGAGAGGCTAACAAAGCTTTTATAGCAGAAAGCTCTTCCAGGGAAAATATTGGGGCTAACCTTCCGGGAAATTCTGAACAGAAAATGTGTGGTTTAAATTTGCGCAATGGTAAAAAGGCACCTGATGATGCAGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGATCATTGTCAAAAGACAATAGTGAATTCGCTGAAATGGAGACGTTTCATACAGAAGTTAATATGGAACTGGAATTGCTCCAAATCTGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAATAACGCCGACTTGGATGCTGCTATGGACATGCTGAACCAACTTGAGGTTTTCTCCGTCTGCCCTTTTTATCTTAAACTGCTGTTTCACTCGACTGTTGTTACCGTACAAACAACTTGGTTGACGAACATTGTTTATGCTTGTGATTTGCATTGTTAATATCACTTGTGATGATCTTATGCATGTTGTGAATGGTATCTATGTTTAACTAACTCTTTTGTTGGTTTAATTTGATATTTAGAACAAACATCCATCTGATTTTGAATACGACCCTGAAAGTCTCCCGGACTCTTTGGACATCGGTGATATCTCGGAATCCGGGTTTGCAGCTGCTGATCAACTTTCTTCCAGAATGAAGAATGTAGCCAGTGGCGCAAGTACTTCAACCAGATTCTAGGAGTGCCTGTTAGTTTTGAGAAGTGGTTTTCTGTTTCCTTTCCTGGTTTTCCTTAGATTACTTTAGGATAAGGCATCCTCTCTGGTTATAGGATTGTATAGTGTTCCGAGTTCCTTGTACTTACATGAACTCGTTTGCAACGTCATCAGTGTCTCTTCGGTGTCTTCGGTTTGACCGATCAAAAAGATCGAAATAGGGCAAGCTTTGCTTATTGATATTCCCTTCTTCACCTCTTTTGTGTTGTAGGGTGGTGCCTACAACTTCTTATCTCGACTATTTTCATTCATAGATGTAGATATTGTTCCCTTTTGGACTTCCCCTCGAAATTTTAAAAGAAGTTTCCATACCTTTGTAAGAAATGATCACACTCTTGTAAGGAATGTTCAACAAGGAGTGATTTCACATTGCCCGAACTTACTTTGATATCATTTGTTATTATTTGTAACAGCTCAAGCCTGCCGCTAGCAGATATTCTCTTCTTTGGAGAATAAAACATTTTAAAATTTTAAGAATCTATCGTCATGTATAAGACTTTT

mRNA sequence

ATATTTTCTTTCTGCAATTGTGAAGTGATGAAATCATTCTTAGTAAATCTTAGCTTTGGATACGTAGACTTTCTTCTTTAAATCTTCGTTTTTAAGTGGTTTGCTGTATAGATTTAATTCTTCTCATGTTTCCATGGTCTGATCTTTGCTTTTCTTGGAGTTCGTTTGAACGCATAGATGTATTAATATTTTCTTTCTGATCATCCGAATTATGCGTCCAATTGCTAAAAAATTTCATTGCTGTGAAATTGTTAGCGTACAATGTGTTGAATTGTCTTGAGTTTTCTTGATCTGAGTGTTCATTGCTCCTTGGAATTATTTATACGAAATGCTTGCAGAACTTGAAGGCTATGCCGACTTGATGTTGCATTTCATGCCAAGTGCTATGAGTTTTGAACTTCTTCATTCTTCCATCGCATTCAATCATTTCTTTGAATCATTTCCGCATCTGTTAGCATTTCATACAATTGTTTTACAGGAAGGACAGGACGAGATAGCAATAATTTCTGCATCTGGTGCAATGAAGCCGCACGGATCATCTTTGAACCCGTATGCAACATCCTACATTCCAATCTCCAAGAGAGAGGCTAACAAAGCTTTTATAGCAGAAAGCTCTTCCAGGGAAAATATTGGGGCTAACCTTCCGGGAAATTCTGAACAGAAAATGTGTGGTTTAAATTTGCGCAATGGTAAAAAGGCACCTGATGATGCAGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGATCATTGTCAAAAGACAATAGTGAATTCGCTGAAATGGAGACGTTTCATACAGAAGTTAATATGGAACTGGAATTGCTCCAAATCTGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAATAACGCCGACTTGGATGCTGCTATGGACATGCTGAACCAACTTGAGAACAAACATCCATCTGATTTTGAATACGACCCTGAAAGTCTCCCGGACTCTTTGGACATCGGTGATATCTCGGAATCCGGGTTTGCAGCTGCTGATCAACTTTCTTCCAGAATGAAGAATGTAGCCAGTGGCGCAAGTACTTCAACCAGATTCTAGGAGTGCCTGTTAGTTTTGAGAAGTGGTTTTCTGTTTCCTTTCCTGGTTTTCCTTAGATTACTTTAGGATAAGGCATCCTCTCTGGTTATAGGATTGTATAGTGTTCCGAGTTCCTTGTACTTACATGAACTCGTTTGCAACGTCATCAGTGTCTCTTCGGTGTCTTCGGTTTGACCGATCAAAAAGATCGAAATAGGGCAAGCTTTGCTTATTGATATTCCCTTCTTCACCTCTTTTGTGTTGTAGGGTGGTGCCTACAACTTCTTATCTCGACTATTTTCATTCATAGATGTAGATATTGTTCCCTTTTGGACTTCCCCTCGAAATTTTAAAAGAAGTTTCCATACCTTTGTAAGAAATGATCACACTCTTGTAAGGAATGTTCAACAAGGAGTGATTTCACATTGCCCGAACTTACTTTGATATCATTTGTTATTATTTGTAACAGCTCAAGCCTGCCGCTAGCAGATATTCTCTTCTTTGGAGAATAAAACATTTTAAAATTTTAAGAATCTATCGTCATGTATAAGACTTTT

Coding sequence (CDS)

ATGCTTGCAGAACTTGAAGGCTATGCCGACTTGATGTTGCATTTCATGCCAAGTGCTATGAGTTTTGAACTTCTTCATTCTTCCATCGCATTCAATCATTTCTTTGAATCATTTCCGCATCTGTTAGCATTTCATACAATTGTTTTACAGGAAGGACAGGACGAGATAGCAATAATTTCTGCATCTGGTGCAATGAAGCCGCACGGATCATCTTTGAACCCGTATGCAACATCCTACATTCCAATCTCCAAGAGAGAGGCTAACAAAGCTTTTATAGCAGAAAGCTCTTCCAGGGAAAATATTGGGGCTAACCTTCCGGGAAATTCTGAACAGAAAATGTGTGGTTTAAATTTGCGCAATGGTAAAAAGGCACCTGATGATGCAGTTGCTTCTGCTGTGAAGAATCACCCTTTTCATGGATCATTGTCAAAAGACAATAGTGAATTCGCTGAAATGGAGACGTTTCATACAGAAGTTAATATGGAACTGGAATTGCTCCAAATCTGTTTCCCTGGACTATCTGAACAGTCCCTTACTGATGTCTATTTTGCAAATAACGCCGACTTGGATGCTGCTATGGACATGCTGAACCAACTTGAGAACAAACATCCATCTGATTTTGAATACGACCCTGAAAGTCTCCCGGACTCTTTGGACATCGGTGATATCTCGGAATCCGGGTTTGCAGCTGCTGATCAACTTTCTTCCAGAATGAAGAATGTAGCCAGTGGCGCAAGTACTTCAACCAGATTCTAG

Protein sequence

MLAELEGYADLMLHFMPSAMSFELLHSSIAFNHFFESFPHLLAFHTIVLQEGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRMKNVASGASTSTRF

Homology

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BLAST of Carg02902 vs. NCBI nr
Match: KAG7024479.1 (Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 488.4 bits (1256), Expect = 3.7e-134
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MLAELEGYADLMLHFMPSAMSFELLHSSIAFNHFFESFPHLLAFHTIVLQEGQDEIAIIS 60
           MLAELEGYADLMLHFMPSAMSFELLHSSIAFNHFFESFPHLLAFHTIVLQEGQDEIAIIS
Sbjct: 1   MLAELEGYADLMLHFMPSAMSFELLHSSIAFNHFFESFPHLLAFHTIVLQEGQDEIAIIS 60

Query: 61  ASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRN 120
           ASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRN
Sbjct: 61  ASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRN 120

Query: 121 GKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSLTD 180
           GKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSLTD
Sbjct: 121 GKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSLTD 180

Query: 181 VYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRMKN 240
           VYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRMKN
Sbjct: 181 VYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRMKN 240

Query: 241 VASGASTSTRF 252
           VASGASTSTRF
Sbjct: 241 VASGASTSTRF 251

[Close]

BLAST of Carg02902 vs. NCBI nr
Match: XP_022935877.1 (polyadenylate-binding protein-interacting protein 5-like [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 2.7e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE
Sbjct: 2   EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGASTSTRF 252
           ADQLSSRMKNVASGASTSTRF
Sbjct: 182 ADQLSSRMKNVASGASTSTRF 202

[Close]

BLAST of Carg02902 vs. NCBI nr
Match: XP_023536366.1 (polyadenylate-binding protein-interacting protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 1.0e-104
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE
Sbjct: 2   EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSLTDVYFANNADLDAAMDMLNQLE+KHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLTDVYFANNADLDAAMDMLNQLEDKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGASTSTRF 252
           ADQLSSRMKNVASGASTSTRF
Sbjct: 182 ADQLSSRMKNVASGASTSTRF 202

[Close]

BLAST of Carg02902 vs. NCBI nr
Match: KAG6591590.1 (Polyadenylate-binding protein-interacting protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.1 bits (980), Expect = 3.7e-102
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE
Sbjct: 2   EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGA 246
           ADQLSSRMKNVASGA
Sbjct: 182 ADQLSSRMKNVASGA 196

[Close]

BLAST of Carg02902 vs. NCBI nr
Match: XP_022976200.1 (polyadenylate-binding protein-interacting protein 5-like [Cucurbita maxima])

HSP 1 Score: 378.3 bits (970), Expect = 5.3e-101
Identity = 194/201 (96.52%), Postives = 196/201 (97.51%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           E QDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAF+AESSSRENIGANLPGNSE
Sbjct: 2   EEQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFMAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVA AVKNHPFHGSLSKDNSEF EMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVAPAVKNHPFHGSLSKDNSEFTEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSL  VYFANNADLDAAMDMLNQLE+KHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLAGVYFANNADLDAAMDMLNQLEDKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGASTSTRF 252
           ADQLSSRMKNVASGASTSTRF
Sbjct: 182 ADQLSSRMKNVASGASTSTRF 202

[Close]

BLAST of Carg02902 vs. ExPASy Swiss-Prot
Match: Q9LYE5 (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-16
Identity = 67/191 (35.08%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRNGKKA 124
           MKP   +LNP+A SY+PISKR                              ++   G   
Sbjct: 1   MKPGAFALNPHAASYVPISKR------------------------------VDYGGG--- 60

Query: 125 PDDAVASAVKNHPFHGSLSKDNSEFAEME------TFHTEVNMELELLQICFPGLSEQSL 184
            DD +  A K+     S+ K +SE A  +          +++M++E L + F GLS++S+
Sbjct: 61  -DDGLVFAAKSPTVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESI 120

Query: 185 TDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRM 244
           TDVY AN  DL+A ++MLNQLE  + ++ E   E+LP++LDIGDISESG        S  
Sbjct: 121 TDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG-------PSTS 146

Query: 245 KNVASGASTST 250
           K+    ASTS+
Sbjct: 181 KSTEVAASTSS 146

[Close]

BLAST of Carg02902 vs. ExPASy Swiss-Prot
Match: Q6NQH9 (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-15
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNL------ 124
           MK   S+LNPYA +Y+P+SKRE +   + ++            + +Q   G  +      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGS---LVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSY 60

Query: 125 RNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSL 184
           +  + +P  + +  V NH              +++    E++M++E L   +PGLS++S+
Sbjct: 61  QGTQMSPKKSPSEMVYNH--------------QLKDEDLEMDMDIEYLLATYPGLSQESI 120

Query: 185 TDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRM 244
            DVY AN  DLDA ++MLNQLE       EY    LPD+LDIGD+ E         SS+ 
Sbjct: 121 NDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----IITESSKQ 165

Query: 245 KNVASGASTST 250
           KN  S AS+S+
Sbjct: 181 KNDGSSASSSS 165

[Close]

BLAST of Carg02902 vs. ExPASy TrEMBL
Match: A0A6J1F6U2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111442652 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.3e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE
Sbjct: 2   EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGASTSTRF 252
           ADQLSSRMKNVASGASTSTRF
Sbjct: 182 ADQLSSRMKNVASGASTSTRF 202

[Close]

BLAST of Carg02902 vs. ExPASy TrEMBL
Match: A0A6J1IIU2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111476662 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.6e-101
Identity = 194/201 (96.52%), Postives = 196/201 (97.51%), Query Frame = 0


Query: 51  EGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSE 110
           E QDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAF+AESSSRENIGANLPGNSE
Sbjct: 2   EEQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFMAESSSRENIGANLPGNSE 61

Query: 111 QKMCGLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICF 170
           QKMCGLNLRNGKKAPDDAVA AVKNHPFHGSLSKDNSEF EMETFHTEVNMELELLQICF
Sbjct: 62  QKMCGLNLRNGKKAPDDAVAPAVKNHPFHGSLSKDNSEFTEMETFHTEVNMELELLQICF 121

Query: 171 PGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAA 230
           PGLSEQSL  VYFANNADLDAAMDMLNQLE+KHPSDFEYDPESLPDSLDIGDISESGFAA
Sbjct: 122 PGLSEQSLAGVYFANNADLDAAMDMLNQLEDKHPSDFEYDPESLPDSLDIGDISESGFAA 181

Query: 231 ADQLSSRMKNVASGASTSTRF 252
           ADQLSSRMKNVASGASTSTRF
Sbjct: 182 ADQLSSRMKNVASGASTSTRF 202

[Close]

BLAST of Carg02902 vs. ExPASy TrEMBL
Match: A0A5A7TBQ8 (Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007180 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.4e-69
Identity = 146/213 (68.54%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 48  VLQEGQDEIAIISASGAMKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPG 107
           V  EG D+I I+S SG MKPHGSSLNP+ATSYIP+S+R AN+ FIAE++SRENIGAN+PG
Sbjct: 15  VALEGLDKIEIVSPSGEMKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPG 74

Query: 108 NSEQKMC---------GLNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTE 167
            SEQ +           LN+ +GKKA   A +SAVKNHPFHGSLS+ +S+ +EME F  E
Sbjct: 75  YSEQCLYPPYNNSISPRLNMNHGKKA-SVAASSAVKNHPFHGSLSQQSSDLSEMEIFDRE 134

Query: 168 VNMELELLQICFPGLSEQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSL 227
           VNM+LELLQ+ FPGLSEQSLTDVYFAN  DLDAA+DML+QLENKHP D EYD ESLPD+L
Sbjct: 135 VNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTL 194

Query: 228 DIGDISESGFAAADQLSSRMKNVASGASTSTRF 252
           DIGDISESGF   DQ S RMKNVA+ ASTS+RF
Sbjct: 195 DIGDISESGFVTVDQPSFRMKNVANQASTSSRF 226

[Close]

BLAST of Carg02902 vs. ExPASy TrEMBL
Match: A0A1S3CR41 (polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=LOC103503796 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.1e-64
Identity = 137/196 (69.90%), Postives = 159/196 (81.12%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMC---------G 124
           MKPHGSSLNP+ATSYIP+S+R AN+ FIAE++SRENIGAN+PG SEQ +           
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLYPPYNNSISPR 60

Query: 125 LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSE 184
           LN+ +GKKA   A +SAVKNHPFHGSLS+ +S+ +EME F  EVNM+LELLQ+ FPGLSE
Sbjct: 61  LNMNHGKKA-SVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 120

Query: 185 QSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLS 244
           QSLTDVYFAN  DLDAA+DML+QLENKHP D EYD ESLPD+LDIGDISESGF   DQ S
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 245 SRMKNVASGASTSTRF 252
            RMKNVA+ ASTS+RF
Sbjct: 181 FRMKNVANQASTSSRF 195

[Close]

BLAST of Carg02902 vs. ExPASy TrEMBL
Match: A0A0A0LHC3 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.6e-63
Identity = 134/197 (68.02%), Postives = 155/197 (78.68%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCG--------- 124
           MKPHGSSLNP+ATSYIP+S+R AN+ FI E++SRENIGANLPG SEQ +           
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 125 -LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLS 184
            LN+ +GKKA      +AVKNHPF GSLS+ +S+  EME F  EVNM++ELLQ+ FPGLS
Sbjct: 61  RLNMNHGKKA--SVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLS 120

Query: 185 EQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQL 244
           EQSLTDVYFAN  DLDAA+DML+QLENKHP D EYDPESLPD+LDIGDISESGF   DQ 
Sbjct: 121 EQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQP 180

Query: 245 SSRMKNVASGASTSTRF 252
           S RMKNVA+ ASTS+RF
Sbjct: 181 SFRMKNVANQASTSSRF 195

[Close]

BLAST of Carg02902 vs. TAIR 10
Match: AT5G11440.1 (CTC-interacting domain 5 )

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-17
Identity = 67/191 (35.08%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNLRNGKKA 124
           MKP   +LNP+A SY+PISKR                              ++   G   
Sbjct: 1   MKPGAFALNPHAASYVPISKR------------------------------VDYGGG--- 60

Query: 125 PDDAVASAVKNHPFHGSLSKDNSEFAEME------TFHTEVNMELELLQICFPGLSEQSL 184
            DD +  A K+     S+ K +SE A  +          +++M++E L + F GLS++S+
Sbjct: 61  -DDGLVFAAKSPTVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESI 120

Query: 185 TDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRM 244
           TDVY AN  DL+A ++MLNQLE  + ++ E   E+LP++LDIGDISESG        S  
Sbjct: 121 TDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLDIGDISESG-------PSTS 146

Query: 245 KNVASGASTST 250
           K+    ASTS+
Sbjct: 181 KSTEVAASTSS 146

[Close]

BLAST of Carg02902 vs. TAIR 10
Match: AT5G25540.1 (CTC-interacting domain 6 )

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCGLNL------ 124
           MK   S+LNPYA +Y+P+SKRE +   + ++            + +Q   G  +      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGS---LVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSY 60

Query: 125 RNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLSEQSL 184
           +  + +P  + +  V NH              +++    E++M++E L   +PGLS++S+
Sbjct: 61  QGTQMSPKKSPSEMVYNH--------------QLKDEDLEMDMDIEYLLATYPGLSQESI 120

Query: 185 TDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQLSSRM 244
            DVY AN  DLDA ++MLNQLE       EY    LPD+LDIGD+ E         SS+ 
Sbjct: 121 NDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----IITESSKQ 165

Query: 245 KNVASGASTST 250
           KN  S AS+S+
Sbjct: 181 KNDGSSASSSS 165

[Close]

BLAST of Carg02902 vs. TAIR 10
Match: AT2G26280.1 (CTC-interacting domain 7 )

HSP 1 Score: 42.7 bits (99), Expect = 4.9e-04
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 158 EVNMELELLQICFPGLSEQSLTDVYFANNADLDAAMDMLNQLE-------NKHPSDFEYD 215
           EVN  ++ L   FPG + +SL +VYFAN  DL   ++ML QLE       N++ S   Y 
Sbjct: 217 EVN-PVDFLASQFPGFAAESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYA 276

The following BLAST results are available for this feature:

BLAST of Carg02902 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024479.1	3.7e-134	100.00	Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subs...	[more]
XP_022935877.1	2.7e-105	100.00	polyadenylate-binding protein-interacting protein 5-like [Cucurbita moschata]	[more]
XP_023536366.1	1.0e-104	99.50	polyadenylate-binding protein-interacting protein 5-like [Cucurbita pepo subsp. ...	[more]
KAG6591590.1	3.7e-102	100.00	Polyadenylate-binding protein-interacting protein 5, partial [Cucurbita argyrosp...	[more]
XP_022976200.1	5.3e-101	96.52	polyadenylate-binding protein-interacting protein 5-like [Cucurbita maxima]	[more]

BLAST of Carg02902 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYE5	9.4e-16	35.08	Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3...	[more]
Q6NQH9	2.7e-15	32.98	Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Carg02902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6U2	1.3e-105	100.00	polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata O...	[more]
A0A6J1IIU2	2.6e-101	96.52	polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=...	[more]
A0A5A7TBQ8	3.4e-69	68.54	Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CR41	1.1e-64	69.90	polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LHC3	3.6e-63	68.02	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV...	[more]

BLAST of Carg02902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11440.1	6.6e-17	35.08	CTC-interacting domain 5	[more]
AT5G25540.1	1.9e-16	32.98	CTC-interacting domain 6	[more]
AT2G26280.1	4.9e-04	42.19	CTC-interacting domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038981	Polyadenylate-binding protein-interacting protein 5/6	PANTHER	PTHR37252	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 65..249
None	No IPR available	PANTHER	PTHR37252:SF3	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 65..249
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 158..201 score: 11.416346
IPR041806	Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain	CDD	cd14371	CUE_CID7_like	coord: 160..202 e-value: 3.36609E-13 score: 60.3513

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02902-RA	Carg02902-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043130	ubiquitin binding