Carg02726 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTAATCCACCAATTTGATTGTTGTTGGGGGCTTTCACGGGTGCGAAAACCAATTGGGCGGTCAACAGATTGAAGCATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGGTATGTATGTTTATACATTCACAAATCCCACTTGCATATCAATCTTGGATTCATCATTGTTTGTCTCTGTTTTGTAGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA GTTAATCCACCAATTTGATTGTTGTTGGGGGCTTTCACGGGTGCGAAAACCAATTGGGCGGTCAACAGATTGAAGCATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA ATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL Homology
BLAST of Carg02726 vs. NCBI nr
Match: KAG7035846.1 (AP2-like ethylene-responsive transcription factor PLT1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_022958273.1 (LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT1 [Cucurbita moschata]) HSP 1 Score: 214.2 bits (544), Expect = 7.7e-52 Identity = 102/110 (92.73%), Postives = 105/110 (95.45%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: KAG6605902.1 (AP2-like ethylene-responsive transcription factor PLT2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198.4 bits (503), Expect = 4.4e-47 Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_022944693.1 (AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita moschata]) HSP 1 Score: 124.4 bits (311), Expect = 8.0e-25 Identity = 77/146 (52.74%), Postives = 86/146 (58.90%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_022985835.1 (AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita maxima]) HSP 1 Score: 124.4 bits (311), Expect = 8.0e-25 Identity = 77/146 (52.74%), Postives = 86/146 (58.90%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy Swiss-Prot
Match: Q5YGP8 (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 57/141 (40.43%), Postives = 70/141 (49.65%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy Swiss-Prot
Match: Q5YGP7 (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08 Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy TrEMBL
Match: A0A6J1H2P2 (LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT1 OS=Cucurbita moschata OX=3662 GN=LOC111459548 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 3.7e-52 Identity = 102/110 (92.73%), Postives = 105/110 (95.45%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy TrEMBL
Match: A0A6J1JCD5 (AP2-like ethylene-responsive transcription factor PLT2 OS=Cucurbita maxima OX=3661 GN=LOC111483764 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25 Identity = 77/146 (52.74%), Postives = 86/146 (58.90%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy TrEMBL
Match: A0A6J1FYB3 (AP2-like ethylene-responsive transcription factor PLT2 OS=Cucurbita moschata OX=3662 GN=LOC111449076 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25 Identity = 77/146 (52.74%), Postives = 86/146 (58.90%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy TrEMBL
Match: A0A1S4E5A7 (AP2-like ethylene-responsive transcription factor PLT2 OS=Cucumis melo OX=3656 GN=LOC103503191 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22 Identity = 76/159 (47.80%), Postives = 88/159 (55.35%), Query Frame = 0
BLAST of Carg02726 vs. ExPASy TrEMBL
Match: A0A5D3BC19 (AP2-like ethylene-responsive transcription factor PLT2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001210 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22 Identity = 76/160 (47.50%), Postives = 88/160 (55.00%), Query Frame = 0
BLAST of Carg02726 vs. TAIR 10
Match: AT3G20840.1 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11 Identity = 57/141 (40.43%), Postives = 70/141 (49.65%), Query Frame = 0
BLAST of Carg02726 vs. TAIR 10
Match: AT1G51190.1 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09 Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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