Carg02698 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02698
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 7308970 .. 7309340 (+)
RNA-Seq ExpressionCarg02698
SyntenyCarg02698
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAGCAGCTCGAAAATTGACCCATCAGGTGTGACTTATTTATTAATTTTGACCTTTAAAAACATTACTTTTTCGAGTTCTTACGTTTTTTTTGTTTAATACAAGATTAGAGTATACGATGCTTATTTGTGCATGTAGAATTCAAGCCTGTAGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATTTAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAG

mRNA sequence

ATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGTAGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATTTAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAG

Coding sequence (CDS)

ATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGTAGGTTTAGAACTCGAGGTCTTGCAGAAAGAGGTCGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGCAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATTTAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAG

Protein sequence

MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMESLKRLCEEFNSLRKEYYETLGKQTRES
Homology
BLAST of Carg02698 vs. NCBI nr
Match: KAG7035874.1 (hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMES 60
          MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMES
Sbjct: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMES 60

Query: 61 LKRLCEEFNSLRKEYYETLGKQTRES 87
          LKRLCEEFNSLRKEYYETLGKQTRES
Sbjct: 61 LKRLCEEFNSLRKEYYETLGKQTRES 86

BLAST of Carg02698 vs. NCBI nr
Match: XP_022958532.1 (uncharacterized protein LOC111459736 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 12  EFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMESLKRLCEEFNSL 71
           EFKP G ELEVLQKEVEAKTKKIKEMKKEIE IKMWLEEKKASREEMESLKRLCEE+NSL
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 222

Query: 72  RKEYYETLGKQTRES 87
           RKEYYETLGKQTRES
Sbjct: 223 RKEYYETLGKQTRES 237

BLAST of Carg02698 vs. NCBI nr
Match: KGN48117.1 (hypothetical protein Csa_003321 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-12
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+ V  EL+ L++E+E K KK++EMKK+IE  K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEFNSLRKEYYETLGKQTRES 87
          EME  K LC ++ SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of Carg02698 vs. NCBI nr
Match: KAG8653043.1 (hypothetical protein MANES_06G161800v8 [Manihot esculenta] >KAG8653045.1 hypothetical protein MANES_06G161800v8 [Manihot esculenta])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 19 ELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKK--ASREEMESLKRLCEEFNSLRKEYY 78
          ELE LQKE E KT+KI+E+K +IEA+K+ LE++K    +E+MES   L E++NS+R +YY
Sbjct: 30 ELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESFNNLTEKYNSMRAQYY 89

Query: 79 ETLGKQ 83
            L ++
Sbjct: 90 ALLAEK 95

BLAST of Carg02698 vs. NCBI nr
Match: KAG8653044.1 (hypothetical protein MANES_06G161800v8 [Manihot esculenta])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 19  ELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKK--ASREEMESLKRLCEEFNSLRKEYY 78
           ELE LQKE E KT+KI+E+K +IEA+K+ LE++K    +E+MES   L E++NS+R +YY
Sbjct: 42  ELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESFNNLTEKYNSMRAQYY 101

Query: 79  ETLGKQ 83
             L ++
Sbjct: 102 ALLAEK 107

BLAST of Carg02698 vs. ExPASy TrEMBL
Match: A0A6J1H234 (uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC111459736 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 12  EFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMESLKRLCEEFNSL 71
           EFKP G ELEVLQKEVEAKTKKIKEMKKEIE IKMWLEEKKASREEMESLKRLCEE+NSL
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 222

Query: 72  RKEYYETLGKQTRES 87
           RKEYYETLGKQTRES
Sbjct: 223 RKEYYETLGKQTRES 237

BLAST of Carg02698 vs. ExPASy TrEMBL
Match: A0A0A0KIA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+ V  EL+ L++E+E K KK++EMKK+IE  K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEFNSLRKEYYETLGKQTRES 87
          EME  K LC ++ SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of Carg02698 vs. ExPASy TrEMBL
Match: A0A2C9VRE5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G161800 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 4  SSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKK--ASREEMESL 63
          S S  DPS       ELE LQKE E KT+KI+E+K +IEA+K+ LE++K    +E+MES 
Sbjct: 8  SKSSSDPS-------ELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESF 67

Query: 64 KRLCEEFNSLRKEYYETLGKQ 83
            L E++NS+R +YY  L ++
Sbjct: 68 NNLTEKYNSMRAQYYALLAEK 81

BLAST of Carg02698 vs. ExPASy TrEMBL
Match: B9RIF8 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1578740 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.5e-04
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 18 LELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKK--ASREEMESLKRLCEEFNSLRKEY 77
          LELE LQK+ E KT+KI+++K +IE++K+ LE+K+   S E+ME+ K L  ++N+LR EY
Sbjct: 17 LELETLQKQHEEKTRKIQKLKGQIESVKLHLEKKRKEVSEEKMENFKILSVKYNNLRDEY 76

Query: 78 YETLGKQTRE 86
             L ++TR+
Sbjct: 77 NALLAEKTRK 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7035874.12.3e-35100.00hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022958532.13.9e-2794.67uncharacterized protein LOC111459736 [Cucurbita moschata][more]
KGN48117.12.7e-1256.67hypothetical protein Csa_003321 [Cucumis sativus][more]
KAG8653043.12.7e-0450.00hypothetical protein MANES_06G161800v8 [Manihot esculenta] >KAG8653045.1 hypothe... [more]
KAG8653044.12.7e-0450.00hypothetical protein MANES_06G161800v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H2341.9e-2794.67uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC1114597... [more]
A0A0A0KIA61.3e-1256.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1[more]
A0A2C9VRE54.5e-0546.91Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G161800 PE=4 SV=... [more]
B9RIF86.5e-0447.14Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1578740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..40
NoneNo IPR availableCOILSCoilCoilcoord: 44..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02698-RACarg02698-RAmRNA