Carg02614 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02614
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 7785014 .. 7791838 (+)
RNA-Seq Expression	Carg02614
Synteny	Carg02614

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAAAAAAAAAAAAAAAAAGATGTCACTCAAGGATTCTGATTGGTGTTTTTGTTTGCCCTAGCTTTAGCTGCTGCGTTGGTTTGTCTGTGCAACCGCTCCGTTAGTCGTTTTGGAGTTCGTGTTCTTCGATCGAATCCTCTCACACAAATGAATCCTACAAAACGACACAAACGACAAAACTCATCTGCTAAATCTGGTAAAGAAAAACACAATGAGCTGAGTTCGATAAATGTTTCAAGTGATTCCAGAAGTTGACATGGCGATGAATGTAAGTTTTTTGTTCATACCTTTTTGGAAGCAGTACTGGATATCATCAATTCCCAAGCCTGTAAACAAGGAGTGTTAGATTATTAATAGCTATAGCTGTGCTCTGTTATATGTTAATTTACCTCTGAAAATTGTTGCCGTTGAGGTTCCGAAATACACAATTCTTCGCGGGAGATCCCATATCCATTCCCTAAAAACGCTAATGGGGTTTTTACTTGATTCGTCATCGGCAAAAACCTGCATTCGAATTGCGTATGATTCATAGTAATACTGTGGCTCATGGAAGAATTCCAACGTGAAGTTTTTGACTAACCTCGTTGACTTGAAAATATGTCCCGTTTAATGGGAATTTGCCTCTCATGGCTGTTCTACAGGGTATCTGGAACAATATTGGTTCATATATTGGCGGATTTACGAAGTAGTCAATTAATAACATCTTGGAAGTTTGCTTTATTACTTACCAAAATCGTTCCGTGAACTGTTCCACTGTTTTGTTTCCTGTGAATGTTGCAGGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGGTACGTGCATTTTGTATTGGGTGGCTCAGATGAATCTATAGTTTCACCTGAAAACATCAATTATACATTGAGCACTGGATGTTTCTGATCATTATATTGGTTTATTGAGATTTGAACGTTTACAGAATTTTCGAAGCAGTACCTGGTGACCATATGCACAAAAGGTACGGGCAAGCATCATTTAGCTCTCGTGGTTCTAGCTGTAGACAGACAGATAGAAACGAACTATTACGCGACTATAAATGATTGATTTTCCGGCCAGGTTACTCGGAAATGTTTTTACCTCATATAGGAGAGGATGTGTATCTGGAAGTTCATAGCTGCATCATGTCAGTTGCAATTAGTTTCTTTTCTAATATGTGTTTTAGAGAATACTCATTTCTATAATAGCTAAAACTCAATGCTTAAACGCCATACTTACGCTTGATGTTCTGTCCTGAGACGATCTACATGCTTCAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCAAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTCGATTGTGATTCATCATATGCATGTTCAGGTGATTGAGGCACTTCAATGATAGGTTCACAATTGATGGTTTCATATCTCGATTCTGAAGATGGATTGCCTTCGATGTGGAGTACTGGTGCTGGATTCATCTCTTGAGCAGTGCCTTCATACCTTTTTTCCGGGATCATTGTACTTACCATTCTTTTCTCTGGCAATCCAGGTAATGCGAGCCTTGCACTGTTTTGATTATAGGACCTCAGAAGAGAATACAATCATAGAACCTATAAATCTCTATAATTTGCACACAACCTCACAACACTTGGCTTTCATTTGAAGTGTTCTGCCACAAAATCAACCTCTTCACAGGACAATGCAAGGTCAGATCTGTTATAATTTCTGATTGCGCTTGTTGGAAGCAACAAAAATGAGTTTTCAATCCTTCCAAATTTTTTTTATACACAACTCCGTATAAAATCTGCTTTTATTTCTGAATTGAAAATCCATGCACTAATTTGTCCATACCTTGCATATTTGCTAGCGTAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGGTAAATAATCAAATACTTCACTTAAAATGTTTTATATAGAATCAAATGATGCTCTGGCCATATACGCTTGCTAGGATCATAAGGTTTACCTTTCCAAATGTTATCAGTTGATAGTGCAGTTCATACCTATAGTAAAAAGCTTGAAGTGTGAACTTTTGCTTGTTTGATAGACGTTATAAAGTACATATTTATTTTTAAAATGGGAAGTAATAGAGAATTACAGAGTTCGTTGGTCAAGTGTACTGAGCCTTGGCCATAGATATTTTTGAATAGAATCCATCATAGGGAACCTACACAGAAGACATGTTAACGTCTCTCTATTGGTCATATGAACGATGCTTATTCTTTATATTCTATACTTACGTCTCTAGAAGATGAATCTGAACCTCCTCAGGCAGCGGTTCAAGAGGAACCCATCCTATTCGAACTGCGATTCGACCAACATTTACGTCCACCTCATTCAAAGAAAAATAGGAGTTATGCATGGAATACATATCTTACAAATCATAAATTCATATATATCTTACTGGAAAGGCAACTTGCTGAAGTGATAAAAGCCTTACGCATTCTACACTTTTCAATCCTAGCCCATGTATCTCCAATAGATATGCCCTGCAGGCACGCACAAGTAATATATCTAAATGTGACATTTAAAAAATCAAAGTTCTTTTGTTCTTGGAATGTTAAGAGTTTCAGCCTTCAAAGTAGACTTACTTAACATCATTTGGAGGAGCATGTCTAAGCCATTCGAGGTCAATGTGGCCATGCATTCTAGCTGTTCGATTAATAAACTCCTGTAGGAAAAAGAAACGATGTGGAAAGTCAGAGACCTTAGCCCCAAGCCTTTTGTTTATTTGCAGTATTACCTTAGAACACCCTTTTTATTTTTTTTATTTCACTTTAGTTTCTTAAACCTTAATTCTTCTTGCTATGGTGTTATGTTGGCCACGTTCCTTGATGGCAGCTGCAATCTTAATAGGGTCTGCTGACCCAACTGCTTCCCAGTCCACAGAATCCATGTGATCCCTACTTCTTGGCTCAGGAACAGAATAGGCTCTCCTCATACTGTCCCATTTTTCCTTTAGACTATTCCAATCCATTTCTGGCTTCATTTTACTATTTTTGGCTGTCCCCTTAGAAATATCTGTCCTTTTTTCATTACTAAAATCATTAGAATCTCTGTCTTCCAAATCATTGACATCACCAGTGAGTTGAATCTCTTGATTTTGATACCTTTCAGAGCTGCCAATAGAACTCTGAGATTTCTCATTTGGCGTGACTTGTAAATCAACTTCCACCTCTTTGGATTCTAAAATTTCATTTTCTTGATTGCTTTTATGCGATGATGTGCTAGTTGGACTGCTGCTATAGGGCTCTTGGACAGAGGTTGATTTATTAGAATGGAGCACTGTGTTATCTGTGCCATCCAAATTCGTAAACAAACCTATTCCAGAATCATCTTCGAAACATGTAGATGAGTGAAGGGTATCATCAAGGCTTTGTTTTAGCGATGATCCCATAAAATCTTGAGGCGAAATTGCATCATTCGCAGATATTAATTGTTCAACTTCTTCACGATCTCCTGTTTTCTTGTTACTCTCCAACATACTGTCATTGTTCCATTCGCTTTCACACGGAAAATATCCTTTGTTTCTTTGAGTTGATTGTTGAGTGCAGAAAACGTCCTGGCCCTGACAATATTCTGTATGGTTTCTTGTTGCACAGAGGGGGAATGTTGCAGCAAGTGACATATAAGCAGAACTGTGAAGAACAAGAGAAGTAAAGGATATAAGCTTCATTTGGTATATTTCACTAGTGCTAGAATCATCTACAGGAAACAGTTATGTTTCTTTACCTTGAAAGATGGTCAGAGACATTTTGAGTAAGAAAAACGCCAACCACAGAATCCACCACCGAACCTTTCCATGGCGAAAAACGCCTATCGCCTGCACATCAAAAACGTTCTGCTTTTATACAAAGATTTTGAGCATTTATTGCAGCTCGCAATGTATGACAAACACACTAACTTATTTTACCTTTTTGTAAGCTTAGTTCTATTCCAGTTCTGCTTCATTAATAACGGATATACTACATACCATACAGTTACATGTAATAAGCTTTACCTAAAATTAGATGCATTCTAGCATTAAAAGCATCTATCCGTACACGGAAAATTTCCCTTTCATGTGCCCACCACTTTTCGGTATTGACGTCAACTTTTTCTGAGCCAAAATCACTCGCTTCTTGGGTTATTAGCGTCCACATAGTAATGTCTCTTGGGTCAAGGTTCACTCTACCCAACAATTTTTTCTTAGTTGAGTTCAATGATTCAGGATGGGGAACTATTGCGCCTTCCATGCCATGAACATAACTTAGATTGTGCTCTCCCTTGCTGGTTTTCTTTCCTTGTTTTGGAACAATTTGCTTTTCATGGCCCGAAGCAGTTCCTTCTTTCTGTTGTGAATTAACGTGCGTTAGACCAGTGCTGTTACTAATGCCTGCATAAATGAGAATAGTTCCGAACTGTGATTTGTTGTAATGACTGTCTGCAGGATAAGGAACAAAAACCTTCTTACTGCAAGAATTTGTTTGCTTTATTATTTGCTGGTCGATAACTGGATTAGTGCCTTTTATAATCAGAAACAAACCCGAACAGTGCCGGATGCAAACATTATGCAGAAAAAAAAAAAAAAAAAAAGATACCTCTTGTTTCAAGTGTAAGCCTGATATGCTCATGATTATTTCTTGTTCCTTCACTTCTATTCCATAATATTACATTGAGGGCAGGTCTCGTTTCATTTACACTTCCTGGATGGGTGAAGTCCTGTTGCCTGATCAAGCTTCTTCCGCTGCCCACATCATGAAAACCTGAAAACTCGGTAACATTTTGCCTTCAATTTATTTGCATATTGGGCTGAAAACTGAAAAGAAGTCTTAAATCAAGACATTTCTTTTAGTTCTTTATTCATTAGTGCCTCATAATAGCAAAATAACAGTAAGCTACGTATGGGATAAGAAGAGTAGTTTTTCCCGTAGCAACAGTGAAGTACCTGTAATAATTCTAGGAAGTGAAATGCCTGTCCCTGATGGGTTCTTTTCATTTATAAGCTTCAAATTAGTCAAAAACTGTCTGATATCAAGCCATCTCATTGTTTGCTTACCGTTGTGACCTGCAAGGAAATGCTGTCAGCATTTACCTATAAATCGTTCTTAAAGATAAATTAAATACCACTGCTGAAATGAAGTTGCCAACATGAACATAGCTTAATTGTCCTACTTAATGTTTCAATACGAATTGCATTGCCAATCTTCCAGAAAGTCCCCTCCCTAAAGATAGCTGCAAACTTGAAAGTTACTGCAGGGAGCGTTGTTTGACCCGACCAATCTGAAAAAGCCACAAACTTGTTGCATTCAAGACCCAAGAGGCCAATGGTAATATATGTTTTCTCATGGTAAAGCGAAAAGAAATTACCCTCTGCTATGGCTGTTTCCACAGATGCTTCTCTGTCGTTAGAACTTAATGCAGAATGAGATTGACAGCCATCATCTGAATGATTATACATTTCAGTTGTTTGATCTGATACTTTTGTTGGTGTTTCTTCAATCTCCAGTTTCTGTTTTGTGGTCTCATCATCATCATCTGAAATATCATAAAAATTTCATTAGGACGTTTAAATTCATGAGTCACTATTAGCGTAGACATTAGAATAGAATACCTCTGCCATTGTTTTTTATTGCTTTTTTTGTGTTGGAGGCATGTTTATGTGTGTTTCTCCGCAACTGTTTACAGACTTCAATTGCTGAAGCTACGTTGCACCTTCTAACCATTGGACTCCTTTTTCTCTTGCAGTAGATGAATGGCTGTAGATTGTTTCTTGATCCCTCGCCTTTTTTATTTCCAGACCTCAATCCATACGGTGTTCTCTTAGTGATTTTTGCTGGCCTTCTCCTTGAACTCCTTTTTCTCCTGCATTTCTGTGGTATTCCATGGAGCCATTCATAAAGCCTCCCGGTCGACCCGACTTTGGTTTGGATAACTGTACTCTTTGAATGATCGTCCTTGGATTCCTTTTCATCAAGGCTAGCAACTTCTACTGAAGCTTTCTCACTCACAGTAAAAGTGGGTGAAGCTTTCTCATTCTTCAGTTCATTTCCAATCAAGACTAGATCTTTGCAACTAACCGTAGCATTATTGAGTAAAGCTTTCTCATTTACCAGATCTCTGCAACTATCTATAATATGAATTTTATCTATAATATGAACTTGATCATTTTCTTGTACAGAATAACTGTTTTGCTGACATCCTCTAACAGTAGTAACAATTTTTTTGGTTTTTGGTCTCGGCTTTGGCTTTACTCTCGGCTTTGGCTTTGGCCTTACTCTCGGCGGCTTTGGCTTTACTGGTTGGGTTGATCTCTTCCTTGCTCTGCCTTCTCCGATCACTTTTGGCCGGTACATTTTCTTCTTTTTCTTTTTTCTGCGTGTTTCAATCTGTGGTCTCTTTCTCTTCAAATCCAATGGAGCTGAAATGGTTGGTTCCATTTCCAATCCATTTTCGTGTTTCTCAGAATTTCTGGATGGAAATGATATTTCATCTAGAGTTGAAATGGTTGGTTCCATTTCTAATGAATTTTCGTGTTTCTCAGAATTTCTGAACGGAAATGATATTTCATCCATTCGAGTTGAAATGGTTGGTTCCATTTCTAATGGATTTTCGTGTTTATCAGAATTTCTGGATGGAAATGATATTTCATCTATTGGAGTTGGAGTTGAAATG

mRNA sequence

AGAAAAAAAAAAAAAAAAAAAAAGATGTCACTCAAGGATTCTGATTGGTGTTTTTGTTTGCCCTAGCTTTAGCTGCTGCGTTGGTTTGTCTGTGCAACCGCTCCGTTAGTCGTTTTGGAGTTCGTGTTCTTCGATCGAATCCTCTCACACAAATGAATCCTACAAAACGACACAAACGACAAAACTCATCTGCTAAATCTGGTAAAGAAAAACACAATGAGCTGAGTTCGATAAATGTTTCAAGTGATTCCAGAAGTTGACATGGCGATGAATTACTGGATATCATCAATTCCCAAGCCTGTAAACAAGGAGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGATTTGAACGTTTACAGAATTTTCGAAGCAGTACCTGGTGACCATATGCACAAAAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCAAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTCGATTGTGATTCATCATATGCATGTTCAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGAATTTCTGGATGGAAATGATATTTCATCTATTGGAGTTGGAGTTGAAATG

Coding sequence (CDS)

ATGTTTCAAGTGATTCCAGAAGTTGACATGGCGATGAATTACTGGATATCATCAATTCCCAAGCCTGTAAACAAGGAGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGATTTGAACGTTTACAGAATTTTCGAAGCAGTACCTGGTGACCATATGCACAAAAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCAAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTCGATTGTGATTCATCATATGCATGTTCAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGAATTTCTGGATGGAAATGATATTTCATCTATTGGAGTTGGAGTTGAAATG

Protein sequence

MFQVIPEVDMAMNYWISSIPKPVNKEMNMILHCKALPFPDLNVYRIFEAVPGDHMHKSLRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACSVPTFGPQRTSIAVWFSLRAKDLQMSVQEFLDGNDISSIGVGVEM

Homology

[Close]

BLAST of Carg02614 vs. NCBI nr
Match: KAG7035956.1 (hypothetical protein SDJN02_02756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MFQVIPEVDMAMNYWISSIPKPVNKEMNMILHCKALPFPDLNVYRIFEAVPGDHMHKSLR 60
           MFQVIPEVDMAMNYWISSIPKPVNKEMNMILHCKALPFPDLNVYRIFEAVPGDHMHKSLR
Sbjct: 1   MFQVIPEVDMAMNYWISSIPKPVNKEMNMILHCKALPFPDLNVYRIFEAVPGDHMHKSLR 60

Query: 61  IGMEATLLFKGIKAPVMLLSMQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACS 120
           IGMEATLLFKGIKAPVMLLSMQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACS
Sbjct: 61  IGMEATLLFKGIKAPVMLLSMQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACS 120

Query: 121 VPTFGPQRTSIAVWFSLRAKDLQMSVQEFLDGNDISSIGVGVEM 165
           VPTFGPQRTSIAVWFSLRAKDLQMSVQEFLDGNDISSIGVGVEM
Sbjct: 121 VPTFGPQRTSIAVWFSLRAKDLQMSVQEFLDGNDISSIGVGVEM 164

[Close]

BLAST of Carg02614 vs. NCBI nr
Match: KAG6606007.1 (hypothetical protein SDJN03_03324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 71/95 (74.74%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MFQVIPEVDMAMN--YWISSIPKPVNKEMNMILHCKALPFPDLNVYRIFEAVPGDHMHKS 60
          MFQVIPEVDMAMN  +  S    PV+  ++ +L        DLNVYRIFEAVPGDHMHKS
Sbjct: 1  MFQVIPEVDMAMNDEHDPSLQSSPVSWYVHFVL--------DLNVYRIFEAVPGDHMHKS 60

Query: 61 LRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS 94
          LRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS
Sbjct: 61 LRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS 87

The following BLAST results are available for this feature:

BLAST of Carg02614 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035956.1	1.4e-86	100.00	hypothetical protein SDJN02_02756, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606007.1	1.1e-25	74.74	hypothetical protein SDJN03_03324, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg02614 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02614 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02614 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02614-RA	Carg02614-RA	mRNA