Carg02400 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02400
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr15: 2174053 .. 2175856 (+)
RNA-Seq Expression	Carg02400
Synteny	Carg02400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAACAGTGATTTTGGCTTCGATCCTCTTCGTCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTATTCCAAATTCAGTTGCTTGATTCTGAGATGATGGGGGCTTTTCTTTAATTCTTACGCTCTTTGTTTTTTCAGCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCAGTTCCTGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACACCGAGAAGAAGAAGTACCCTGGCGGTGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGTAAAGCTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTAAGGACCCTCATTTCTTTGCACAACTCTGCTTAGATTCAATGCCAATTAGAGAAGGTTCAGTTTTGAGTGCTTTCTAGAACTGTTCAAACCACTTTTCCATCCTCAAAACCACTTCGTTTAATTGGAAAAAAGAACGAAACATTGTTTATAAGGGTGTGGAAACTTTTCCCTAACCGACGTATTTTAAAGACCTTGAGAGGAAACCCGAAAGGGAATGTGCCAATGTGGGTGTCGGCTTGGGCTGTTACAAATAGTATCAGAGCTAGACACTAGAGATATGTCAATGAAGACCTTGAGCCTCTAAGGGGTGGACACGAGGCGGTGTGGCAGCAAGAATGTTGGACCTCAAAGGGGGTGGATTTTGGGGGGTGTCCCACATCGATTGGAGAAGGGAACAAGTGTCAGCGAGGACGCTGGATCCCGAATGAGGTAGATTGTGAGATCCCACGTCGATGGGGGATGAGAACGAAGCATTCTCTATAAGTGTGGAAACCTCGCATTTTAAAAACCTGAAGGGAGTCCGAAAGGAAAATCTGGAGAAAATAGGGCTATTATATCAACCTCTTCAAATATCTATATAACTGAATCTACATAACCCACCAATTCAAGCTCTTGAGCTTCATAGTGATTTGAGTGGCGTCAGAGCTGGAAGTATTGTGTTTATGAACCCAAATAATCTCATTTTCTTCCTGTTCTTGAATTCAGTGACAATTTAAACATGAAAATTGATTACTGAACACTTGATCGAATTGCTTCTGGCTTGTAGGTCGGTTGGCGCTGTTAGCTTTCGTCGGAATCTGTGTGCAACAAACGGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATCCCCAGATCAATTTCGCCTTGAATTTTGCACTAAATCATACTAATTGTAATTAAATTTCCGCCTACTGAATCTGAACTCGAGGGCTTCTTCTCTCTGAATGTGTTCCTTCACTTGATATTGACCTTCAAGCCTGTAAGTCACTAGTAGACTTGGCCCAATCTGATTACCCAAAGTCAGTAGCAGCAGTGAGCCCAAAAGATCCTTACAATCCATTGGGCCAAGGCCCATAAACGGGCAAGAAGCCCATACAAATGAGCCCATTGGACCATGAAAATGTGAATATTAGGCCCATATTAAGTGACCCCACATAAAGAAATTTATAAATAAATAAAAATAAATAAAAGAAAATAAAAGAAAATGTTCCATAAAGAGTGACATCCAACCATCACTTTTTTCAAACAAAAATTTGACTGAAACAGAGC

mRNA sequence

ATGTTTAACAGTGATTTTGGCTTCGATCCTCTTCGTCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCAGTTCCTGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACACCGAGAAGAAGAAGTACCCTGGCGGTGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGTAAAGCTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTGTTAGCTTTCGTCGGAATCTGTGTGCAACAAACGGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATCCCCAGATCAATTTCGCCTTGAATTTTGCACTAAATCATACTAATTGTAATTAAATTTCCGCCTACTGAATCTGAACTCGAGGGCTTCTTCTCTCTGAATGTGTTCCTTCACTTGATATTGACCTTCAAGCCTGTAAGTCACTAGTAGACTTGGCCCAATCTGATTACCCAAAGTCAGTAGCAGCAGTGAGCCCAAAAGATCCTTACAATCCATTGGGCCAAGGCCCATAAACGGGCAAGAAGCCCATACAAATGAGCCCATTGGACCATGAAAATGTGAATATTAGGCCCATATTAAGTGACCCCACATAAAGAAATTTATAAATAAATAAAAATAAATAAAAGAAAATAAAAGAAAATGTTCCATAAAGAGTGACATCCAACCATCACTTTTTTCAAACAAAAATTTGACTGAAACAGAGC

Coding sequence (CDS)

ATGTTTAACAGTGATTTTGGCTTCGATCCTCTTCGTCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCAGTTCCTGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACACCGAGAAGAAGAAGTACCCTGGCGGTGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGTAAAGCTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTGTTAGCTTTCGTCGGAATCTGTGTGCAACAAACGGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATCCCCAGATCAATTTCGCCTTGA

Protein sequence

MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

Homology

[Close]

BLAST of Carg02400 vs. NCBI nr
Match: KAG7016284.1 (Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 9.9e-105
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 60
           MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA
Sbjct: 1   MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 60

Query: 61  VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD 120
           VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD
Sbjct: 61  VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD 120

Query: 121 PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR 180
           PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR
Sbjct: 121 PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR 180

Query: 181 SISP 185
           SISP
Sbjct: 181 SISP 184

[Close]

BLAST of Carg02400 vs. NCBI nr
Match: XP_023549542.1 (chlorophyll a-b binding protein 6, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.5 bits (994), Expect = 6.4e-104
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 60
           MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA
Sbjct: 32  MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 91

Query: 61  VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD 120
           VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD
Sbjct: 92  VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD 151

Query: 121 PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR 180
           PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR
Sbjct: 152 PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR 211

Query: 181 SIS 184
           SIS
Sbjct: 212 SIS 214

[Close]

BLAST of Carg02400 vs. NCBI nr
Match: XP_022939932.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_022993029.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima] >KAG6578757.1 Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381.7 bits (979), Expect = 3.5e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246

[Close]

BLAST of Carg02400 vs. NCBI nr
Match: XP_023549541.1 (chlorophyll a-b binding protein 6A, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS 184
           KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS
Sbjct: 187 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS 245

[Close]

BLAST of Carg02400 vs. NCBI nr
Match: KAG7033004.1 (Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 175/184 (95.11%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 60
           +FNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEWAA
Sbjct: 70  VFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAA 129

Query: 61  VPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKD 120
           +PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK+
Sbjct: 130 IPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKN 189

Query: 121 PVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPR 180
           P KLKEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR
Sbjct: 190 PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 249

Query: 181 SISP 185
           +ISP
Sbjct: 250 TISP 253

[Close]

BLAST of Carg02400 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.2e-94
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEWAA+PGG
Sbjct: 65  DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 125 QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKL 184

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP 180
           +E KVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239

[Close]

BLAST of Carg02400 vs. ExPASy Swiss-Prot
Match: P12360 (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 2.8e-94
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFD L LGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEWAA+PGG
Sbjct: 66  DFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGG 125

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLGYSKDP K 
Sbjct: 126 QATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKF 185

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           +E KVKEIKNGRLALLA VG CVQQ+AY GTGPLENLATHLADPWHNNIGD+IIP+ I P
Sbjct: 186 EELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245

[Close]

BLAST of Carg02400 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-89
Identity = 150/178 (84.27%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL L  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWAA+P G
Sbjct: 65  DFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLG PVPWG LPTIL IEFLAIAF E QR+MEKD EKKKYPGGAFDPLG+SKDP K 
Sbjct: 125 QATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKF 184

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSI 183
           +E K+KEIKNGRLA+LAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IPR+I
Sbjct: 185 EELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242

[Close]

BLAST of Carg02400 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 20  LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLP 79
           L+RF+E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLGQP+P+ ++ 
Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SIS 189

Query: 80  TILVIEFLAIAFVEHQRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLA 139
           T++ IE L I ++E QR+ E D+EK+ YPGG  FDPLG + DPVK  + ++ EIK+ RLA
Sbjct: 190 TLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLA 249

Query: 140 LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD 176
           ++ F+G  VQ  A  G GPL N ATHL+DP H  I D
Sbjct: 250 MVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282

[Close]

BLAST of Carg02400 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 20  LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLP 79
           ++RF+E ELIH RWAMLA  G L  E L    W  A +   V G  ++YLGQP+P+ ++ 
Sbjct: 133 IQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SIS 192

Query: 80  TILVIEFLAIAFVEHQRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLA 139
           T++ IE L I ++E QR+ E D+EK+ YPGG  FDPLG + DP K  + ++ EIK+ RLA
Sbjct: 193 TLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLA 252

Query: 140 LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD 176
           ++AF+G  VQ  A  G GPL N ATHL+DP H  I D
Sbjct: 253 MVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Carg02400 vs. ExPASy TrEMBL
Match: A0A6J1JZ33 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489171 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.7e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246

[Close]

BLAST of Carg02400 vs. ExPASy TrEMBL
Match: A0A6J1FI72 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445650 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.7e-102
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246

[Close]

BLAST of Carg02400 vs. ExPASy TrEMBL
Match: A0A5A7TXV7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001080 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 7.9e-100
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTISP 246

[Close]

BLAST of Carg02400 vs. ExPASy TrEMBL
Match: A0A5D3BC57 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001420 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 7.9e-100
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTISP 246

[Close]

BLAST of Carg02400 vs. ExPASy TrEMBL
Match: A0A6J1BW39 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006054 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 7.9e-100
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG
Sbjct: 67  DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 126

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 127 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKL 186

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 184
           KEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Sbjct: 187 KEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRNISP 246

[Close]

BLAST of Carg02400 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 346.3 bits (887), Expect = 1.5e-95
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEWAA+PGG
Sbjct: 65  DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 125 QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKL 184

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP 180
           +E KVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239

[Close]

BLAST of Carg02400 vs. TAIR 10
Match: AT3G54890.2 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 264.6 bits (675), Expect = 5.9e-71
Identity = 130/175 (74.29%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEWAA+PGG
Sbjct: 65  DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLG PVPWGTLPTIL IEFLAIAF                                 
Sbjct: 125 QATYLGNPVPWGTLPTILAIEFLAIAF--------------------------------- 184

Query: 125 KEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP 180
            E KVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 185 -ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 205

[Close]

BLAST of Carg02400 vs. TAIR 10
Match: AT3G54890.4 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 257.3 bits (656), Expect = 9.4e-69
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEWAA+PGG
Sbjct: 65  DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKL 124
           QATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL
Sbjct: 125 QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKL 184

Query: 125 KEYKVKEIKNGR 137
           +E KVKEIKNG+
Sbjct: 185 EELKVKEIKNGK 196

[Close]

BLAST of Carg02400 vs. TAIR 10
Match: AT3G54890.3 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-42
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 5   DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 64
           DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEWAA+PGG
Sbjct: 65  DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124

Query: 65  QATYLGQPVPWGTLPTILVIEFLA 89
           QATYLG PVPWGTLPTIL IEFLA
Sbjct: 125 QATYLGNPVPWGTLPTILAIEFLA 148

[Close]

BLAST of Carg02400 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-34
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 20  LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLP 79
           L+RF+E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLGQP+P+ ++ 
Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SIS 189

Query: 80  TILVIEFLAIAFVEHQRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLA 139
           T++ IE L I ++E QR+ E D+EK+ YPGG  FDPLG + DPVK  + ++ EIK+ RLA
Sbjct: 190 TLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLA 249

Query: 140 LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD 176
           ++ F+G  VQ  A  G GPL N ATHL+DP H  I D
Sbjct: 250 MVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282

The following BLAST results are available for this feature:

BLAST of Carg02400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016284.1	9.9e-105	100.00	Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023549542.1	6.4e-104	100.00	chlorophyll a-b binding protein 6, chloroplastic-like isoform X2 [Cucurbita pepo...	[more]
XP_022939932.1	3.5e-102	100.00	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
XP_023549541.1	2.3e-101	100.00	chlorophyll a-b binding protein 6A, chloroplastic-like isoform X1 [Cucurbita pep...	[more]
KAG7033004.1	1.5e-100	95.11	Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp....	[more]

BLAST of Carg02400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01667	2.2e-94	92.00	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P12360	2.8e-94	88.89	Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q9SDM1	1.2e-89	84.27	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]
Q9XF88	8.1e-33	49.04	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q07473	2.3e-32	49.04	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg02400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ33	1.7e-102	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FI72	1.7e-102	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7TXV7	7.9e-100	97.22	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3BC57	7.9e-100	97.22	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1BW39	7.9e-100	97.22	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Carg02400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54890.1	1.5e-95	92.00	photosystem I light harvesting complex gene 1	[more]
AT3G54890.2	5.9e-71	74.29	photosystem I light harvesting complex gene 1	[more]
AT3G54890.4	9.4e-69	90.91	photosystem I light harvesting complex gene 1	[more]
AT3G54890.3	4.4e-42	91.67	photosystem I light harvesting complex gene 1	[more]
AT3G08940.2	5.7e-34	49.04	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 1..175 e-value: 1.4E-71 score: 242.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 3..149 e-value: 2.0E-41 score: 142.2
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..175
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 3..175
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 4..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02400-RA	Carg02400-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding