Carg02372 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02372
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L35
Location	Carg_Chr15: 2036993 .. 2038881 (+)
RNA-Seq Expression	Carg02372
Synteny	Carg02372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCTTCTAAGTAGCAGCTCTTCCACCAGGTTCCATTATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACACAAGAAGAAATGGGTAGGTTTTCAGTCAGATCTTCTCATAAACGAAATTAAACATACTCAATTCGCTTTTGGCTCTCTAATTCTTCGAGGATAATGATGAAATTTTTGTTATTCAATTTGGTGTTTTCGGCTTGTAGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGCGGATCTTTTGACACAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATGTAATTCCTTTTTCTTTTAATTATTTTTACTTTCTCCCGTGATACGTCTCATTCTTTTGTTGACCTTGTTGTTCTGTATGGTTGATTTTGCAGCAAGGTAGTTAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCTGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGAAGGCTCACCAAGCATCAAGTAATTGTTTCATCTTGATCTTTTACTGTCTTTCTTCCCTTTAATTTCGGTACAGCGTGATTTTGTGTGTTCGTCTCTTAAACTGTTTTCTGGCCCTAGTATGGATTATATTCTTAAATGTTGACAATGTCAGTGCATATGATACCTGTTGAGATTTTCTACGTTGCCAAAAAAAAAAAAAGTTTAAAACTACTTGTTGCCTATTGGTTTGGATGAGAAACAGTAAAGAATTGGTATGGGAAGGAAATGCTATTAAACTTATACAAGAATAGTGGCTGGGTTTTTTGTTAGTTTTAAAACCTTGATATCTGAAGTTGAAGCAAGTATATTTTGATAACAATTTCATTTCTAATCATGGTTTTGAAATTTCGTTTGTTTCCTCTCAATTTCATTGCAAGAAAACATTTGAATTCTTACCCCAATTTAAGAACAAATTTCAAAAATCTTTTGTTGCCAGAGATTTGTAGAACATATAAGAGTGGAATACAAACTAAATAAAGGAATTTACCTCTTGTTTTATAAGCTTAATTGACTAAAACCAAAGTCAAATAAGCAAACAATCATCAAACTAAGCCTTGATTAATTAGAATTATGGTTTCTTAACCAAGTCTTCAAGTAATGCTGTAGAATTGGTTAGGTATGTGGATGATACCATCTGATTCCTTTTCTAATCACTTTCTTGATGCAATTGTAATGCTGTGAACCATTTCTTTCATGGTTTCAACAATTTCGTTGAATGATTCCATTGTATGATGCAGGCGTCGTTGAAAACGGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCACTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGTTGTTCTATTTTCATTGACAATTATATATTTCAGAGTTTAGCGTTTTGTTCTTCATGTTTTTTGAACTTATTTTTTAGTGCATTCCACTTTAAGCTTCTCCAAATTTCCATGACATTATTTGCACTCAACCCACCTATGCCAAGTTGATCTTTTCTATTGTGTTCTCTGAGATGATGATTTAAATGAATGGAGAAAAAATGAAGGCTGTCGTATTATTGACCATATTAACTTCCGAAAAGGTTGGAAGTGATGGTTGAGTTTCGTTTGTGTTTAATAGTATTTTGATAGGTATATGAATTTTTATATTATTTTATGTGATATAAATCCC

mRNA sequence

AGTCTTCTAAGTAGCAGCTCTTCCACCAGGTTCCATTATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACACAAGAAGAAATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGCGGATCTTTTGACACAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTTAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCTGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGAAGGCTCACCAAGCATCAAGCGTCGTTGAAAACGGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCACTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGTTGTTCTATTTTCATTGACAATTATATATTTCAGAGTTTAGCGTTTTGTTCTTCATGTTTTTTGAACTTATTTTTTAGTGCATTCCACTTTAAGCTTCTCCAAATTTCCATGACATTATTTGCACTCAACCCACCTATGCCAAGTTGATCTTTTCTATTGTGTTCTCTGAGATGATGATTTAAATGAATGGAGAAAAAATGAAGGCTGTCGTATTATTGACCATATTAACTTCCGAAAAGGTTGGAAGTGATGGTTGAGTTTCGTTTGTGTTTAATAGTATTTTGATAGGTATATGAATTTTTATATTATTTTATGTGATATAAATCCC

Coding sequence (CDS)

ATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGCGGATCTTTTGACACAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTTAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCTGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGAAGGCTCACCAAGCATCAAGCGTCGTTGAAAACGGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Carg02372 vs. NCBI nr
Match: XP_022939961.1 (60S ribosomal protein L35 [Cucurbita moschata] >XP_022957446.1 60S ribosomal protein L35 [Cucurbita moschata] >XP_022991739.1 60S ribosomal protein L35 [Cucurbita maxima] >XP_022993735.1 60S ribosomal protein L35 [Cucurbita maxima] >XP_023523288.1 60S ribosomal protein L35 [Cucurbita pepo subsp. pepo] >KAG6578726.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016256.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. NCBI nr
Match: KAG7031634.1 (60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 24  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 83

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 84  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 143

Query: 121 IKV 124
           IKV
Sbjct: 144 IKV 146

[Close]

BLAST of Carg02372 vs. NCBI nr
Match: KAG6601021.1 (Spliceosome-associated protein 130 B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1    MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
            MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1235 MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 1294

Query: 61   ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 1295 ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 1354

Query: 121  IKV 124
            IKV
Sbjct: 1355 IKV 1357

[Close]

BLAST of Carg02372 vs. NCBI nr
Match: XP_023549703.1 (60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. NCBI nr
Match: XP_022134532.1 (60S ribosomal protein L35 [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 6.5e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-51
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-50
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.3e-50
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy TrEMBL
Match: A0A6J1JVN4 (60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy TrEMBL
Match: A0A6J1FH81 (60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy TrEMBL
Match: A0A6J1E5L3 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. ExPASy TrEMBL
Match: A0A0A0KQT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.0e-52
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-51
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-51
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-51
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Carg02372 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Carg02372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939961.1	4.5e-53	100.00	60S ribosomal protein L35 [Cucurbita moschata] >XP_022957446.1 60S ribosomal pro...	[more]
KAG7031634.1	4.5e-53	100.00	60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601021.1	4.5e-53	100.00	Spliceosome-associated protein 130 B, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023549703.1	2.9e-52	98.37	60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo]	[more]
XP_022134532.1	6.5e-52	97.56	60S ribosomal protein L35 [Momordica charantia]	[more]

BLAST of Carg02372 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	2.6e-51	91.87	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	1.7e-50	91.06	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	3.7e-50	90.24	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	6.3e-50	90.24	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	1.8e-49	89.43	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Carg02372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVN4	2.2e-53	100.00	60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1	[more]
A0A6J1FH81	2.2e-53	100.00	60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=...	[more]
A0A6J1BZV3	3.2e-52	97.56	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]
A0A6J1E5L3	3.2e-52	98.37	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=...	[more]
A0A0A0KQT2	7.0e-52	97.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1	[more]

BLAST of Carg02372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	1.2e-51	91.06	Ribosomal L29 family protein	[more]
AT3G09500.1	2.6e-51	90.24	Ribosomal L29 family protein	[more]
AT5G02610.1	4.5e-51	90.24	Ribosomal L29 family protein	[more]
AT3G55170.1	1.3e-50	89.43	Ribosomal L29 family protein	[more]
AT3G55170.2	1.3e-50	89.43	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 4.4E-22 score: 80.0
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 4.93005E-11 score: 52.1047
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 1.2E-17 score: 63.6
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 7.1E-18 score: 62.4
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.8168
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 5.7E-36 score: 124.7
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02372-RA	Carg02372-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome