Carg02319 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02319
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclin-dependent protein kinase inhibitor SMR6
Location	Carg_Chr15: 1811048 .. 1811594 (+)
RNA-Seq Expression	Carg02319
Synteny	Carg02319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAACCAGAAGGGAAAAAATGGGTAATCGCCGGGCTGCCGGCGAGGTCATCGTTGAAGCCCATTACCACCAAATCGAGAGCGAAAGACGGCGAGGACGACGGCGAGAAGTCGCGTTCAACAACGCCGACGGCGAAAGAAGCGAGAATACCGGAGAAACTGAGTTGCCCTGCGGCGCCGAGAAAGCGTAGGTCGCTAAAATCAAGCTCTAATCAAAATCATGGTAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTTAAGATCCGAGTTTAAAGGGCCAATTGGGTTTGTTTAGTTCATAATTTAGGGTTTGTGATTTTGGGTGTTTGTTTAATTTTAGTATTATAATTATTATTTTTTTTATGTTCTTGGTAATCCTGAGTAAGGTGATTATGATGTACAAAGGATTTGATATTTGTTATCTAAACGAGTGTTGTAGGTTAGCTCTGTTTCAAAATTTGGGAATTCTAAAATTTTCTCGGGAAACAAACAGAGACCCAGATGA

mRNA sequence

ATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAACCAGAAGGGAAAAAATGGGTAATCGCCGGGCTGCCGGCGAGGTCATCGTTGAAGCCCATTACCACCAAATCGAGAGCGAAAGACGGCGAGGACGACGGCGAGAAGTCGCGTTCAACAACGCCGACGGCGAAAGAAGCGAGAATACCGGAGAAACTGAGTTGCCCTGCGGCGCCGAGAAAGCGTAGGTCGCTAAAATCAAGCTCTAATCAAAATCATGGTAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTTAAGATCCGAGTTAGCTCTGTTTCAAAATTTGGGAATTCTAAAATTTTCTCGGGAAACAAACAGAGACCCAGATGA

Coding sequence (CDS)

ATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAACCAGAAGGGAAAAAATGGGTAATCGCCGGGCTGCCGGCGAGGTCATCGTTGAAGCCCATTACCACCAAATCGAGAGCGAAAGACGGCGAGGACGACGGCGAGAAGTCGCGTTCAACAACGCCGACGGCGAAAGAAGCGAGAATACCGGAGAAACTGAGTTGCCCTGCGGCGCCGAGAAAGCGTAGGTCGCTAAAATCAAGCTCTAATCAAAATCATGGTAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTTAAGATCCGAGTTAGCTCTGTTTCAAAATTTGGGAATTCTAAAATTTTCTCGGGAAACAAACAGAGACCCAGATGA

Protein sequence

MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVSSVSKFGNSKIFSGNKQRPR

Homology

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BLAST of Carg02319 vs. NCBI nr
Match: KAG7016206.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVSSVSKFGNSKIFSGNK 120
           RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVSSVSKFGNSKIFSGNK
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVSSVSKFGNSKIFSGNK 120

Query: 121 QRPR 125
           QRPR
Sbjct: 121 QRPR 124

[Close]

BLAST of Carg02319 vs. NCBI nr
Match: KAG6578666.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 8.0e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. NCBI nr
Match: XP_023550994.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDG+DDGEKSRSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGDDDGEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. NCBI nr
Match: XP_022939509.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 5.8e-48
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTK RAKDGEDDGEKS STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKL CPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. NCBI nr
Match: XP_022993176.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGG E EGKKWVIAGLPARSSLKPI+TKSRAKDGEDD EKSRSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDDCEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-22
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRA-----KDGEDD---GEKSRS 60
           MGFSKKSQ +GG E +GKKWVIAG+  R+SLKP+ TK RA      + E+D    E+  S
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  TTPTAKEARIPEKLSCPAAPRKRR-SLKSSSNQNHGREFFNPP-DLESVF 101
           TTPTAKE +IPE L CP APRKRR +LK  SN    REFF PP DLE+VF
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVF 108

[Close]

BLAST of Carg02319 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-14
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGF--EPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPT 60
           MG+S K   Q+DG      +GKKWVIAG+P+RS LK I         E + +    TTPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVS 106
           A   RIP    CPAAP+KR+     S     R++F+PPDLE+VF  R S
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVFIQRAS 109

[Close]

BLAST of Carg02319 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--PEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPT 60
           MGFS K+  Q D  F    EGKK VI G+   S++KPI+  S A    +D E    TTPT
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED-EDLCPTTPT 60

Query: 61  AKEARIPEKLSCPAAPRKRR-SLKSSSNQNHGREFFNPPDLESVFKIRVS 106
           A   RIP  + CP AP+KR+ +LK S      REFF+PPDLE+VF  R +
Sbjct: 61  ADSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYRTT 106

[Close]

BLAST of Carg02319 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MG SKKSQ+    + +GKK++ A    R+SLKP+ TK      E + E     TPTA+ A
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTK--LIKPERESEDGICITPTARGA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVF 101
           + PE   CPAAPRKR  +    N      F  P D E VF
Sbjct: 61  KTPE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Carg02319 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTK RAKDGEDDGEKS STTPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKL CPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.3e-47
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQIDGG E EGKKWVIAGLPARSSLKPI+TKSRAKDGEDD EKSRSTTPTAKEA
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDDCEKSRSTTPTAKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Carg02319 vs. ExPASy TrEMBL
Match: A0A0A0KUE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQID GFEPE KKWVIAGL ARSSLKPI TKS+ K+GEDDG+K    TPT KEA
Sbjct: 1   MGFSKKSQIDTGFEPEPKKWVIAGLSARSSLKPINTKSKTKEGEDDGDK----TPTGKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Carg02319 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.6e-38
Identity = 86/104 (82.69%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQID GFE E KKWVIAGL ARSSLKPI TKS+ K+GE+DGEK    TPT KEA
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEK----TPTGKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Carg02319 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.6e-38
Identity = 86/104 (82.69%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MGFSKKSQID GFE E KKWVIAGL ARSSLKPI TKS+ K+GE+DGEK    TPT KEA
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEK----TPTGKEA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 105
           RIPEKL CP APRKRRSLKSSSNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Carg02319 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-23
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRA-----KDGEDD---GEKSRS 60
           MGFSKKSQ +GG E +GKKWVIAG+  R+SLKP+ TK RA      + E+D    E+  S
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  TTPTAKEARIPEKLSCPAAPRKRR-SLKSSSNQNHGREFFNPP-DLESVF 101
           TTPTAKE +IPE L CP APRKRR +LK  SN    REFF PP DLE+VF
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVF 108

[Close]

BLAST of Carg02319 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-15
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 1   MGFSKK--SQIDGGF--EPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPT 60
           MG+S K   Q+DG      +GKKWVIAG+P+RS LK I         E + +    TTPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 61  AKEARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRVS 106
           A   RIP    CPAAP+KR+     S     R++F+PPDLE+VF  R S
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVFIQRAS 109

[Close]

BLAST of Carg02319 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MGFSKKS--QIDGGFE--PEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPT 60
           MGFS K+  Q D  F    EGKK VI G+   S++KPI+  S A    +D E    TTPT
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED-EDLCPTTPT 60

Query: 61  AKEARIPEKLSCPAAPRKRR-SLKSSSNQNHGREFFNPPDLESVFKIRVS 106
           A   RIP  + CP AP+KR+ +LK S      REFF+PPDLE+VF  R +
Sbjct: 61  ADSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYRTT 106

[Close]

BLAST of Carg02319 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60
           MG SKKSQ+    + +GKK++ A    R+SLKP+ TK      E + E     TPTA+ A
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTK--LIKPERESEDGICITPTARGA 60

Query: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVF 101
           + PE   CPAAPRKR  +    N      F  P D E VF
Sbjct: 61  KTPE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Carg02319 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.4e-05
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 54  TPTAKEARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVF 101
           TP AK++RIPE L+CP AP+K+R  K+   +     FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Carg02319 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016206.1	3.5e-61	100.00	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
KAG6578666.1	8.0e-50	100.00	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
XP_023550994.1	1.8e-49	99.04	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]	[more]
XP_022939509.1	5.8e-48	97.12	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita moschata]	[more]
XP_022993176.1	1.1e-46	96.15	cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]	[more]

BLAST of Carg02319 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	4.3e-22	60.00	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SAD3	4.3e-14	44.95	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	2.4e-12	47.27	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LVX6	1.4e-09	42.00	Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg02319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHD8	2.8e-48	97.12	cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JVL3	5.3e-47	96.15	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KUE2	1.2e-38	83.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1	[more]
A0A5D3BY33	7.6e-38	82.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C883	7.6e-38	82.69	uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=...	[more]

BLAST of Carg02319 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	3.1e-23	60.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G10690.1	3.1e-15	44.95	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	1.7e-13	47.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G27630.1	1.0e-10	42.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G20898.1	8.4e-05	46.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..55
None	No IPR available	PANTHER	PTHR33142:SF40	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR6-RELATED	coord: 1..105
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02319-RA	Carg02319-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus