Carg02252 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02252
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L34
Location	Carg_Chr15: 1473282 .. 1474330 (-)
RNA-Seq Expression	Carg02252
Synteny	Carg02252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGATTTTTCTTAGAGACGCATAGATACCCGAAATCAAGGTTAATTGAAGATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTACGTTTTTTTTGTCCTTCATCAGTGTAATTCCAGCTCTTATGAGACGTTTTTTCCCTTCAATTTCGTGACCATTTTGGGTATTGTGCTGATGCGTTTTAGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGGTATGTGTCATTTTATGCCTTTGATTCAAAGATTTTCAGTTTTTGGGGTGTTTATAATTGCATTTGGGGATCGTCATTCTTCTTGAAGCTGACATTGCGTCGCCCTGATAGCTAACTCTCAGTCTCTAGAACATATAATTGTGGCAATCAATTGTCATAGCTGAAAGAAAATGTAATTGCATTGTATTTTAGTTGTAATGTTTTGTTTGAACAGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGTATGTGCTTCATTGAATCAGCCCTGATATTTTTGGTTTCCTTTGGGTTTTCTACCAAATTTAAGCAGTAATTCAACATTGGTTGCAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGAGTATTTTGGCTTGAATTTGCGAATTTTAGTGTTGATAGTGGTTAGATGTTTCTGGGTTCTTCCTTAAATGGGTCATTGTTGACAAATCAATCCCCCAAGTGTCCTGTTTTGTGATATCATGAATGCGGATTTCAGGAAACAATGTTCTTGTGATGTTCTTCAGTATGAACTGGGAATTGACGTGATATTAACAACGTTGAATTACTACAAGAAAGCCACTAATTT

mRNA sequence

CTCGATTTTTCTTAGAGACGCATAGATACCCGAAATCAAGGTTAATTGAAGATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGAGTATTTTGGCTTGAATTTGCGAATTTTAGTGTTGATAGTGGTTAGATGTTTCTGGGTTCTTCCTTAAATGGGTCATTGTTGACAAATCAATCCCCCAAGTGTCCTGTTTTGTGATATCATGAATGCGGATTTCAGGAAACAATGTTCTTGTGATGTTCTTCAGTATGAACTGGGAATTGACGTGATATTAACAACGTTGAATTACTACAAGAAAGCCACTAATTT

Coding sequence (CDS)

ATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK

Homology

[Close]

BLAST of Carg02252 vs. NCBI nr
Match: XP_022939767.1 (60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Query: 121 SK 123
           SK
Sbjct: 121 SK 122

[Close]

BLAST of Carg02252 vs. NCBI nr
Match: XP_023550590.1 (60S ribosomal protein L34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Query: 121 SK 123
           SK
Sbjct: 121 SK 122

[Close]

BLAST of Carg02252 vs. NCBI nr
Match: XP_022993685.1 (60S ribosomal protein L34 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 9.6e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. NCBI nr
Match: XP_027098139.1 (60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein L34 [Coffea eugenioides])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-57
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-55
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLKIQK KEK AAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of Carg02252 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Carg02252 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.5e-54
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Carg02252 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-53
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Carg02252 vs. ExPASy TrEMBL
Match: A0A6J1FHR3 (60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Query: 121 SK 123
           SK
Sbjct: 121 SK 122

[Close]

BLAST of Carg02252 vs. ExPASy TrEMBL
Match: A0A6J1JZ78 (60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.7e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. ExPASy TrEMBL
Match: A0A6P6V549 (60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Carg02252 vs. ExPASy TrEMBL
Match: A0A1S3BV34 (60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Carg02252 vs. ExPASy TrEMBL
Match: A0A5A7UWQ0 (60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00210 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Carg02252 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.8 bits (543), Expect = 7.9e-56
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Carg02252 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.5 bits (537), Expect = 3.9e-55
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Carg02252 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Carg02252 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-43
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRAYGGVLSGSAVRERIM 93
          EYKRSRL+RNRRTVNRAYGGVLSGSAVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of Carg02252 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939767.1	1.1e-56	100.00	60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal prote...	[more]
XP_023550590.1	1.5e-56	99.18	60S ribosomal protein L34 [Cucurbita pepo subsp. pepo]	[more]
XP_022993685.1	9.6e-56	99.17	60S ribosomal protein L34 [Cucurbita maxima]	[more]
XP_038889603.1	2.1e-55	99.17	60S ribosomal protein L34 [Benincasa hispida]	[more]
XP_027098139.1	2.8e-55	98.33	60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein...	[more]

BLAST of Carg02252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	5.3e-57	96.67	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	5.0e-55	92.50	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	1.1e-54	90.83	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	5.5e-54	91.60	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	3.6e-53	90.83	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of Carg02252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHR3	5.5e-57	100.00	60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=...	[more]
A0A6J1JZ78	4.7e-56	99.17	60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1	[more]
A0A6P6V549	1.4e-55	98.33	60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1	[more]
A0A1S3BV34	3.0e-55	97.50	60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1	[more]
A0A5A7UWQ0	3.0e-55	97.50	60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Carg02252 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	7.9e-56	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	3.9e-55	91.60	ribosomal protein L34	[more]
AT3G28900.1	2.5e-54	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	1.2e-43	91.30	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 26..43 score: 50.4 coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 66..88 score: 45.34
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 7.0E-38 score: 128.8
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 1.3E-21 score: 78.0
None	No IPR available	GENE3D	6.20.340.10		coord: 39..122 e-value: 3.0E-36 score: 125.2
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02252-RA	Carg02252-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome