Carg02108 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02108
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-CH-type domain-containing protein
Location	Carg_Chr15: 717305 .. 719602 (-)
RNA-Seq Expression	Carg02108
Synteny	Carg02108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGATGTCTTCGAAATATTTCTTCGTCTTTTTCCCCTCTGCAACTCTGCGACTGTTATAGCCTGCACGTCGCCACTGACACCCAACAAAGCAGCTGAAATAGGGACACCCACCGCAGTTGCTTCTACTTCTCACGCCATTACTGATTATCGCACCAAAATCCACCCTAAACCGAATTTCTACTCTTTTGCTTGATGGGAGTCTCTTTTCTTTGTGGGTATTCACGGTTCTGGCCTCACAGAGCCATTACATGAGGTTTCTCTTTCTGGGTCTTTGCGATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTCGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCAATGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTGTCGGAGTGCTCTTTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATGTAAGTTCCTCCAAATTGAACAACGCCTAATTGTTCTTAGGAATCTGTAGCCGCCATTACAAATCCCATCAGCGTTTTCTTAGGATCCATGTTTTTGTTTGTCAAAACGAACTGAAGTTTGATTTTCCCTAGTAGATGCAAATGCTTTAGTCTGATGTAGTATTGATTAGATCCCATTTCTTAGCTTTCTTTAAGGTTTTACTGATATTGACATCTCCACAAGTTCCGGCATAGCTATCAATATCATTTTCATCTATTAGTTCAAAATGTATTGAACTAGATTCTCATTTCATTCCACCACTTATATGGTCAAAAGGGTTTGTTAGAAGTTAAGAACTATCTTCACTCTATCTTCTGCATAAGTTGAAAATGAGCATATCTAAAGAATTGAATTATTATAGTTGGATCTGTCAACAACTTTATTGCTTTTGGCCCTGCTACCAAACCATGCGTAGTTTGGCTACGAATTTTCTTCACTACTGGTGTGAGATCCCATATCGGTTCGAGAGGGAAACAAGTCATTTTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGCGTTTTAAAAACCTTGAGAGAAGCCCGAAAGAGAAAGCCCAAATAGGACAATATCTTGCAAGAAATGCTTCATTTCCCTCTCCAACCAATGTGAGATTTCACAATCTATCCCATTGGGGGCTAGTGTCCTTGCTCGCACACGTGTCTGGCTATACAATTCAAGTCCAACCTCTAGCAGATATGGTTCGTTTGGGCCTATTATATATCATTGTTAGCCTCACGGTTTTAAAACGCATCTGCTAGGAAGAGGTTTCTAGTGGATTTGGCCTGTTACAAATGGTATCAGAGCTAGACACTAGGCGGTGTGCTAGCAAGGATGCTGGGCCTTAAAGGGGGTGGATTGTGAAATCTCACATCGATTGGAGAGTAGAACGAGTGCAGCATGGATGCTGACTCCGAAAGGGGGTGGATTGCTAGATCTCTTATCGGTTGGAGAGGGGAATAAAACATTATCTATAAGAGTGTGGAAACCTCTCCCAATCCGTTGCTCGTGATTCATGTTGTTCTATTAGATATGTTTGCTTGGGTTGCACTTACCCATCTGCAATTTGTTACAGCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATCAACCTGATTCGACAGAGCAACGCAACGACTCAAACGACGCAACAACAGCAACCGCAGCAGCAGCAGCAGCAGCTGTGGTAGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCATAGGTTCCTGAATTTCTTACTCGCCTGCATGGTCTTTGCCTTTGTCATATCATGGCTGTTTCACTTCAAAATACCCTCATAGTGAAAAGCTTCATCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCGACTATATCGTGTCGTTACCAGCTCGAAAGCTCCCTGAAATGGAAGCATCTGTAAGTTTGTATATTGTTATTAAGGTTGTTGTGTATTTTCTTAAAATAGCTTACTGAAGACAGACAGACAGGTTGGATTGTTGGATGATGAATTTCACAATCAGTTGATGTTCGAAAAGATGCTGGAACCACTCAGCCTAGCTGGATAA

mRNA sequence

TAATGATGTCTTCGAAATATTTCTTCGTCTTTTTCCCCTCTGCAACTCTGCGACTGTTATAGCCTGCACGTCGCCACTGACACCCAACAAAGCAGCTGAAATAGGGACACCCACCGCAGTTGCTTCTACTTCTCACGCCATTACTGATTATCGCACCAAAATCCACCCTAAACCGAATTTCTACTCTTTTGCTTGATGGGAGTCTCTTTTCTTTGTGGGTATTCACGGTTCTGGCCTCACAGAGCCATTACATGAGGTTTCTCTTTCTGGGTCTTTGCGATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTCGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCAATGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTGTCGGAGTGCTCTTTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATCAACCTGATTCGACAGAGCAACGCAACGACTCAAACGACGCAACAACAGCAACCGCAGCAGCAGCAGCAGCAGCTGTGGTAGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCATAGTGAAAAGCTTCATCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCGACTATATCGTGTCGTTACCAGCTCGAAAGCTCCCTGAAATGGAAGCATCTTTGATGTTCGAAAAGATGCTGGAACCACTCAGCCTAGCTGGATAA

Coding sequence (CDS)

ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTCGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCAATGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTGTCGGAGTGCTCTTTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATCAACCTGATTCGACAGAGCAACGCAACGACTCAAACGACGCAACAACAGCAACCGCAGCAGCAGCAGCAGCAGCTGTGGTAGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCATAGTGAAAAGCTTCATCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCGACTATATCGTGTCGTTACCAGCTCGAAAGCTCCCTGAAATGGAAGCATCTTTGATGTTCGAAAAGATGCTGGAACCACTCAGCCTAGCTGGATAA

Protein sequence

MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESSVSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPPHSTEARNFWQGHSEKLHLSLHSATARKLDYIVSLPARKLPEMEASLMFEKMLEPLSLAG

Homology

[Close]

BLAST of Carg02108 vs. NCBI nr
Match: KAG7015997.1 (hypothetical protein SDJN02_21101 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 467.6 bits (1202), Expect = 6.4e-128
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180

Query: 181 HSTEARNFWQGHSEKLHLSLHSATARKLDYIVSLPARKLPEMEASLMFEKMLEPLSLAG 240
           HSTEARNFWQGHSEKLHLSLHSATARKLDYIVSLPARKLPEMEASLMFEKMLEPLSLAG
Sbjct: 181 HSTEARNFWQGHSEKLHLSLHSATARKLDYIVSLPARKLPEMEASLMFEKMLEPLSLAG 239

[Close]

BLAST of Carg02108 vs. NCBI nr
Match: KAG6578436.1 (hypothetical protein SDJN03_22884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 372.1 bits (954), Expect = 3.6e-99
Identity = 190/196 (96.94%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQPRRTS AGADALLASNDVRQCSGQSRAEIVGAAAE+RRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSGAGADALLASNDVRQCSGQSRAEIVGAAAEQRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTAT----AAAAAAAV 180
           KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTAT    AAAAAAAV
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAAAAAV 180

Query: 181 VVPPHSTEARNFWQGH 193
           VVPPHSTEARNFWQGH
Sbjct: 181 VVPPHSTEARNFWQGH 196

[Close]

BLAST of Carg02108 vs. NCBI nr
Match: XP_022938531.1 (uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 uncharacterized protein LOC111444740 [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 5.2e-98
Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGLAEIK+HLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFKIKGDITCEICGSIAHNVTATY+PDSTEQRNDSNDATTAT   AAAAVVVPP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTAT---AAAAVVVPP 180

Query: 181 HSTEARNFWQGH 193
           HSTEARNFWQGH
Sbjct: 181 HSTEARNFWQGH 189

[Close]

BLAST of Carg02108 vs. NCBI nr
Match: XP_022993070.1 (uncharacterized protein LOC111489196 [Cucurbita maxima] >XP_022993071.1 uncharacterized protein LOC111489196 [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-93
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQP RTSAAGADALLAS+DVRQCSGQSRAEIVGAAAEKRRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPSRTSAAGADALLASDDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
            SECS+EMDLECGL+EIKVHLTKM RDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  ASECSVEMDLECGLSEIKVHLTKMGRDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFKIKGDITCEICGSIAHNVT TY+PDSTEQRNDSND TTAT    AAAVVVPP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTVTYEPDSTEQRNDSNDETTAT---TAAAVVVPP 180

Query: 181 HSTEARNFWQGH 193
           HS EARNFWQGH
Sbjct: 181 HSIEARNFWQGH 189

[Close]

BLAST of Carg02108 vs. NCBI nr
Match: XP_023550950.1 (uncharacterized protein LOC111808933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 5.6e-84
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLAS+DVR    +SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVR----KSRAEIVGAAAEKRRGSS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVV 178
           KHCAEAWFKIKGDITCEICGSIAHNVTATY+PDSTEQRNDSNDATTATAAAAAA VV
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVV 173

[Close]

BLAST of Carg02108 vs. ExPASy TrEMBL
Match: A0A6J1FEB0 (uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC111444740 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.5e-98
Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGLAEIK+HLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFKIKGDITCEICGSIAHNVTATY+PDSTEQRNDSNDATTAT   AAAAVVVPP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTAT---AAAAVVVPP 180

Query: 181 HSTEARNFWQGH 193
           HSTEARNFWQGH
Sbjct: 181 HSTEARNFWQGH 189

[Close]

BLAST of Carg02108 vs. ExPASy TrEMBL
Match: A0A6J1JXH7 (uncharacterized protein LOC111489196 OS=Cucurbita maxima OX=3661 GN=LOC111489196 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.4e-93
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           MTTTQNSHVVAMEVGEVEQP RTSAAGADALLAS+DVRQCSGQSRAEIVGAAAEKRRESS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPSRTSAAGADALLASDDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
            SECS+EMDLECGL+EIKVHLTKM RDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  ASECSVEMDLECGLSEIKVHLTKMGRDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFKIKGDITCEICGSIAHNVT TY+PDSTEQRNDSND TTAT    AAAVVVPP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTVTYEPDSTEQRNDSNDETTAT---TAAAVVVPP 180

Query: 181 HSTEARNFWQGH 193
           HS EARNFWQGH
Sbjct: 181 HSIEARNFWQGH 189

[Close]

BLAST of Carg02108 vs. ExPASy TrEMBL
Match: A0A6J1JQX9 (uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.5e-79
Identity = 154/192 (80.21%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60
           M+T QN+HVVAME  + E+P R S AG DA  AS+DVR+CS QS AEIVGAA EKRR SS
Sbjct: 1   MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSS 60

Query: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGL EIKVHL KMERDCRICHLSLDA+N ESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPP 180
           KHCAEAWFK+KGDITCEICGSIAHNVT+T + DSTEQ N+SND TTAT    AAAVVVPP
Sbjct: 121 KHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTAT---TAAAVVVPP 180

Query: 181 HSTEARNFWQGH 193
           HSTE RNFWQGH
Sbjct: 181 HSTETRNFWQGH 189

[Close]

BLAST of Carg02108 vs. ExPASy TrEMBL
Match: A0A6J1GZN3 (uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC111458938 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.2e-76
Identity = 153/193 (79.27%), Postives = 167/193 (86.53%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAA-EKRRES 60
           M+T +++HVVAME  + E+P R S AG  A  AS+DVR+CS QS AEIVGAAA EKRR S
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVEKRRGS 60

Query: 61  SVSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAA 120
           SVSECS+EMDLECGL EIKVHL KMERDCRICHLSLDA+N ESGIPIELGCSCKDDLAAA
Sbjct: 61  SVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAA 120

Query: 121 HKHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVP 180
           HKHCAEAWFK+KGDITCEICGSIAHNVT+T + DSTEQ N+SND TTAT    AAAVVVP
Sbjct: 121 HKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTAT---TAAAVVVP 180

Query: 181 PHSTEARNFWQGH 193
           PHSTEARNFWQGH
Sbjct: 181 PHSTEARNFWQGH 190

[Close]

BLAST of Carg02108 vs. ExPASy TrEMBL
Match: A0A5A7TJA4 (E3 ubiquitin-protein ligase MARCH8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001630 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.2e-73
Identity = 151/202 (74.75%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEI---------VGA 60
           MTT Q SHVVAMEV + +Q  RT          S++VR+CS  SRA+I         V A
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTD---------SDEVRRCSVHSRADILEEEGVAVAVAA 60

Query: 61  AAEKRRESSVSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCS 120
           AAEKRR SSVSECS+EMDLECGLAEIKVHL K+ERDCRICHLSLDASN ESGIPIELGCS
Sbjct: 61  AAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCS 120

Query: 121 CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAA 180
           CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVT TY+ DSTEQRN+ N+ATTAT   
Sbjct: 121 CKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTAT--- 180

Query: 181 AAAAVVVPPHSTEARNFWQGHS 194
           A AA+V+PPHSTEARNFWQGHS
Sbjct: 181 ATAAIVMPPHSTEARNFWQGHS 190

[Close]

BLAST of Carg02108 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 24  SAAGADALLASNDVRQCSG--QSRAEIVGAAAEKRRESSVSECSLEMDLECGLAEIKVHL 83
           S++G D      + R+ SG  +   EIV    ++ R S+ S CS+E+DLE GL E  VHL
Sbjct: 19  SSSGCD---GDGEPRRSSGAVEKEEEIV---KDEERRSNASVCSVEIDLELGLPEKVVHL 78

Query: 84  TKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGS 143
           ++ ERDCRICH+SLDA+N ESG+PIELGCSCK DLAAAHKHCAE WFKIKG+  CE+CGS
Sbjct: 79  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 138

Query: 144 IAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPPHSTEARNFWQGH 193
           IA NV  + + +S E RN++N     T   +       P   E R+FWQGH
Sbjct: 139 IAGNVVGSVEVESEESRNEANGVENLTLRTSG------PRLVEGRSFWQGH 177

[Close]

BLAST of Carg02108 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-20
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 85  ERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 144
           E+DCRICHL L++S  E G P+ LGCSCKDDL   HK CA+ WFKIKG+ TCEIC SIA 
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 145 N 146
           N
Sbjct: 135 N 135

[Close]

BLAST of Carg02108 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-20
Identity = 51/95 (53.68%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 85  ERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 144
           E+DCRICHL ++ S    G  IELGCSCKDDLA AH+ CAE WFKIKGD TCEIC S+A 
Sbjct: 81  EKDCRICHLGVETS---GGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 145 NVTATYQ--PDSTEQRNDSNDATTATAAAAAAAVV 178
           NV    +    + E+R   N   TA      A VV
Sbjct: 141 NVGGANEMVGSTMEERELRNGEETAAGEGGGATVV 172

[Close]

BLAST of Carg02108 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-19
Identity = 52/137 (37.96%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 86  RDCRICHLSLDASNQES-------------------------------GIPIELGCSCKD 145
           RDCRICHL L+ + +                                 G+P++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 146 DLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAA 192
           DL  AH  CAE WFKIKG++TCEICG++A NV         EQ N  + A+T + AAA  
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG-------EQSNPESTASTHSQAAAGQ 198

[Close]

BLAST of Carg02108 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 34  SNDVRQCSGQSRAEIVGAAAEKRRESSVSECSLEMDLECGLAEIKVHLTKM----ERDCR 93
           + DV  CS    A +V         ++VS    E D+    A+ + H   +    ER CR
Sbjct: 46  AKDVVSCSSNISAHVVHEEVAD-NVTAVSCNEAESDISKAKAK-EFHTIDLSGVGERICR 105

Query: 94  ICHLSLDASNQESGIP-------IELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSI 153
           ICH   D S + SG         IE+GC CK++L  AH HCAEAWFK++G+  CEICG  
Sbjct: 106 ICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEICGCT 165

Query: 154 AHNVTATYQPDSTEQRNDSND 164
           A NVT     D + +R+++ D
Sbjct: 166 AKNVTVRLMEDWSGERDNTLD 184

The following BLAST results are available for this feature:

BLAST of Carg02108 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015997.1	6.4e-128	100.00	hypothetical protein SDJN02_21101 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6578436.1	3.6e-99	96.94	hypothetical protein SDJN03_22884, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938531.1	5.2e-98	96.88	uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 unchar...	[more]
XP_022993070.1	3.0e-93	92.71	uncharacterized protein LOC111489196 [Cucurbita maxima] >XP_022993071.1 uncharac...	[more]
XP_023550950.1	5.6e-84	94.35	uncharacterized protein LOC111808933 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02108 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEB0	2.5e-98	96.88	uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A6J1JXH7	1.4e-93	92.71	uncharacterized protein LOC111489196 OS=Cucurbita maxima OX=3661 GN=LOC111489196...	[more]
A0A6J1JQX9	4.5e-79	80.21	uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535...	[more]
A0A6J1GZN3	1.2e-76	79.27	uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A5A7TJA4	2.2e-73	74.75	E3 ubiquitin-protein ligase MARCH8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Carg02108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	3.7e-41	52.05	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	2.1e-20	67.21	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.7e-20	53.68	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	8.8e-19	37.96	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.1e-16	37.59	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 87..140 e-value: 8.2E-18 score: 75.2
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 88..139 e-value: 6.6E-9 score: 35.8
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 80..146 score: 16.897436
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 75..150 e-value: 5.5E-14 score: 53.5
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 35..192
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 35..192
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 88..140 e-value: 5.77256E-11 score: 54.2556
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 85..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02108-RA	Carg02108-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding