Carg02095 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02095
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
LocationCarg_Chr15: 664433 .. 664684 (-)
RNA-Seq ExpressionCarg02095
SyntenyCarg02095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACAACGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCGAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACACATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCATGATTACCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

mRNA sequence

ATGGAGAACAACGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCGAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACACATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCATGATTACCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

Coding sequence (CDS)

ATGGAGAACAACGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCGAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACACATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCATGATTACCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

Protein sequence

MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHPTFKLDPSLLNNKLM
Homology
BLAST of Carg02095 vs. NCBI nr
Match: KAG6578420.1 (hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015984.1 hypothetical protein SDJN02_21088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.3e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
          MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG
Sbjct: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60

Query: 61 AFLWHDYHPTFKLDPSLLNNKLM 84
          AFLWHDYHPTFKLDPSLLNNKLM
Sbjct: 61 AFLWHDYHPTFKLDPSLLNNKLM 83

BLAST of Carg02095 vs. NCBI nr
Match: XP_010108400.1 (uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical protein L484_010408 [Morus notabilis])

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 5  EKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 64
          +K + G ++FQMPLHYPRY+K DY++MPEWKLD+LL +YGLPTHG+L YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 65 HDYH------PTFKL--DPSLLNNKL 83
           D+H      P ++   D SLL+ K+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

BLAST of Carg02095 vs. NCBI nr
Match: PON65649.1 (cytoplasmic tRNA 2-thiolation protein [Trema orientale])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGL THG+L YKR FA+GAFLW DYH 
Sbjct: 29 GVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWPDYHQ 88

Query: 70 TFKLDPSL 78
            K   SL
Sbjct: 89 DRKPSSSL 96

BLAST of Carg02095 vs. NCBI nr
Match: PON37357.1 (hypothetical protein PanWU01x14_320780 [Parasponia andersonii])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGL THG+L YKR FA+GAFLW DY  
Sbjct: 29 GVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWPDYR- 88

Query: 70 TFKLDPSLLNNKL 83
          TF  D SLL+ K+
Sbjct: 89 TF-TDASLLDKKV 99

BLAST of Carg02095 vs. NCBI nr
Match: KAF4351382.1 (hypothetical protein G4B88_028221 [Cannabis sativa])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGLPTHG+L YKR FA+GAFLW  + P
Sbjct: 30 GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 70 TFKLDPS 77
            K   S
Sbjct: 90 EHKTSSS 96

BLAST of Carg02095 vs. ExPASy TrEMBL
Match: W9SNS4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 5  EKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 64
          +K + G ++FQMPLHYPRY+K DY++MPEWKLD+LL +YGLPTHG+L YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 65 HDYH------PTFKL--DPSLLNNKL 83
           D+H      P ++   D SLL+ K+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

BLAST of Carg02095 vs. ExPASy TrEMBL
Match: A0A2P5CX72 (Cytoplasmic tRNA 2-thiolation protein OS=Trema orientale OX=63057 GN=TorRG33x02_270200 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.4e-21
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGL THG+L YKR FA+GAFLW DYH 
Sbjct: 29 GVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWPDYHQ 88

Query: 70 TFKLDPSL 78
            K   SL
Sbjct: 89 DRKPSSSL 96

BLAST of Carg02095 vs. ExPASy TrEMBL
Match: A0A2P5ALC9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGL THG+L YKR FA+GAFLW DY  
Sbjct: 29 GVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWPDYR- 88

Query: 70 TFKLDPSLLNNKL 83
          TF  D SLL+ K+
Sbjct: 89 TF-TDASLLDKKV 99

BLAST of Carg02095 vs. ExPASy TrEMBL
Match: A0A7J6DZ12 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 10 GDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDYHP 69
          G ++FQMPLHYPRY+K DY++MPEWKLDRLL EYGLPTHG+L YKR FA+GAFLW  + P
Sbjct: 30 GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 70 TFKLDPS 77
            K   S
Sbjct: 90 EHKTSSS 96

BLAST of Carg02095 vs. ExPASy TrEMBL
Match: A0A200R4Z5 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1835g174 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 0

Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
          MEN +K     ++FQMPLHYPRYS+ DYE+MPEWKLDRLL+EYGLP  G+L YKR++AMG
Sbjct: 1  MENKKKNGVSSSYFQMPLHYPRYSRKDYEDMPEWKLDRLLMEYGLPAMGDLAYKREYAMG 60

Query: 61 AFLWHDYHP 70
          AFLW D  P
Sbjct: 61 AFLWPDIVP 69

BLAST of Carg02095 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 6.2e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1   MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
           M+    K G  + F+MPLHYPRYSK DY++MPEWKLDR+L +YGL T+G+L +KR FA+G
Sbjct: 19  MDVENGKNGEGSVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIG 78

Query: 61  AFLWHDYHPTFKLDPSLLNNKL 83
           AFLW             +N+KL
Sbjct: 79  AFLWISTRNPKLYQEKSINSKL 100

BLAST of Carg02095 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 3  NNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAF 62
          N++K Q   + FQ+PLHYP+Y+K DYE MPEW+LDRLL EYGLP  G+   KR+FA+GAF
Sbjct: 34 NHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAF 93

Query: 63 LW 65
          LW
Sbjct: 94 LW 95

BLAST of Carg02095 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-12
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYG-LPTHGN-LPYKRQFA 60
          ++ N   +   + F+MPLHYPRY+K DYE M EW+LD LL EYG L  H N L  KR FA
Sbjct: 23 LDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFA 82

Query: 61 MGAFLWHDYHP 70
          +  F+W  +HP
Sbjct: 83 IDTFIW-PHHP 92

BLAST of Carg02095 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 14  FQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTH-GNLPYKRQFAMGAFLW 65
           FQMPL YP Y+K  Y+ M E +LDRLL  YGLPT  GNL  K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

BLAST of Carg02095 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 6.2e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWH 65
          KK+   + FQ+PLHYP+YSK DYE M + +LD LL +YG    G+L  KR FA+ +FLW 
Sbjct: 39 KKEEFPSGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWP 98

Query: 66 D 67
          D
Sbjct: 99 D 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578420.11.3e-43100.00hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_010108400.13.1e-2158.14uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical p... [more]
PON65649.11.5e-2070.59cytoplasmic tRNA 2-thiolation protein [Trema orientale][more]
PON37357.12.6e-2069.86hypothetical protein PanWU01x14_320780 [Parasponia andersonii][more]
KAF4351382.12.6e-2068.66hypothetical protein G4B88_028221 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SNS41.5e-2158.14Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1[more]
A0A2P5CX727.4e-2170.59Cytoplasmic tRNA 2-thiolation protein OS=Trema orientale OX=63057 GN=TorRG33x02_... [more]
A0A2P5ALC91.3e-2069.86Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE... [more]
A0A7J6DZ121.3e-2068.66Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1[more]
A0A200R4Z51.6e-2068.12Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1835g174 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G55570.16.2e-2052.44unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41761.11.2e-1862.90unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G09950.12.8e-1250.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G11405.14.7e-1263.46unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G55620.16.2e-1252.46unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513:SF4OS01G0221400 PROTEINcoord: 4..66
NoneNo IPR availablePANTHERPTHR33513OS06G0523300 PROTEINcoord: 4..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02095-RACarg02095-RAmRNA