Carg02085 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02085
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 631148 .. 632226 (+)
RNA-Seq Expression	Carg02085
Synteny	Carg02085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATGTGAAAGTGGAGAAAACGAGAGAACGAGGAAGAGGGTGCACCAGAAGAGAGCGCTCCAAGAAACGACATTGCGTTTCCTCCTATCTCATGGCGGGGCCGGGGACATACAGGGAACCGAAGAGGGTAAATGGTGAGTGGGGGCAGGGCAGTTTCAGAGCTCGGGTTCTTCCTTGGCTGTCGGTATAATTTGAATCGAATCGTGCCGTTCAAATGTTGACCCTTTTGAGCATGGGGTGGGTCCCACTTCTGACAATGTTTTTTATTTTATTTTTCTTTTGGTATTATAATTTTATTTTATGGCTGTGCTTAATTTGTTATTAAAATTGATTGATGTCCTTCAAACAGCGTCGTATTGAAGCAAAATGTTACACGTCCTTCACACGTGCGGCGTGACATTGAGGTTAAACCAGACCCTGCGCAATTCTCCCAAATCAGCGCTCCATCCCGCCGCCTATGGCCAACAGCCGACGCGACGATCCGACCCGCACACGATATATCCTCTCAGAATTGGCCCGATTCCCAAATTTCCGCTTCTGGGTTCGTAGTTTTCAAAACCTCTTCGCTCAAACTCAAATCTTTTTACACTATATTTCAGGATGATTGCAAATGTTCATTTCTGTTAATTTTTCCTTTCGGTAGTAAAATAATTGAAATGAATTGGGATAAATGGAGTGAATTGTGGAGCTTTGTAGTTTGGTAGACACAAAATTCTCTCAATTGCTGGAAGTTATTGCTATTCTGTGCAGGTTATTTTGCGTTTATTTACAATTCCAGATTGTTCATCTTCTTTTGATTTATGGCTCGATTTTATGCACTCATTGTTATATGTTTGTTCGTTTTTCGTGCGTTTTATGTAGACCTTCTGGCACATTCGTTTTCTTTTTCTATCAGGCTTTTTTTTGTATTTGGAGTAAGAAAGAATTAGGAGAAAAGAAATTTGATTTGGGCTGCTTTCCTTAATTATGTTTAACTCGAAATTGTTCAAGACAAATGGTGTCATACTTGAAATTTTGCCTAGTTCTGACAAATCTATGTTCATTTATTTGATTCAGTACGTTCGCATTTGGTGA

mRNA sequence

ATGGATAATGTGAAAGTGGAGAAAACGAGAGAACGAGGAAGAGGGTGCACCAGAAGAGAGCGCTCCAAGAAACGACATTGCGTTTCCTCCTATCTCATGGCGGGGCCGGGGACATACAGGGAACCGAAGAGGGTAAATGGTGAGTGGGGGCAGGGCAGTTTCAGAGCTCGGGTTCTTCCTTGGCTGTCGCGCTCCATCCCGCCGCCTATGGCCAACAGCCGACGCGACGATCCGACCCGCACACGATATATCCTCTCAGAATTGGCCCGATTCCCAAATTTCCGCTTCTGGTACGTTCGCATTTGGTGA

Coding sequence (CDS)

ATGGATAATGTGAAAGTGGAGAAAACGAGAGAACGAGGAAGAGGGTGCACCAGAAGAGAGCGCTCCAAGAAACGACATTGCGTTTCCTCCTATCTCATGGCGGGGCCGGGGACATACAGGGAACCGAAGAGGGTAAATGGTGAGTGGGGGCAGGGCAGTTTCAGAGCTCGGGTTCTTCCTTGGCTGTCGCGCTCCATCCCGCCGCCTATGGCCAACAGCCGACGCGACGATCCGACCCGCACACGATATATCCTCTCAGAATTGGCCCGATTCCCAAATTTCCGCTTCTGGTACGTTCGCATTTGGTGA

Protein sequence

MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLPWLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW

Homology

[Close]

BLAST of Carg02085 vs. NCBI nr
Match: KAG7015974.1 (hypothetical protein SDJN02_21078, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.4 bits (555), Expect = 2.9e-53
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP 60
           MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP
Sbjct: 1   MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP 60

Query: 61  WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW 103
           WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW
Sbjct: 61  WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW 102

[Close]

BLAST of Carg02085 vs. NCBI nr
Match: KAG6578410.1 (Peptidyl-prolyl cis-trans isomerase FKBP20-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.4 bits (555), Expect = 2.9e-53
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP 60
           MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP
Sbjct: 1   MDNVKVEKTRERGRGCTRRERSKKRHCVSSYLMAGPGTYREPKRVNGEWGQGSFRARVLP 60

Query: 61  WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW 103
           WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW
Sbjct: 61  WLSRSIPPPMANSRRDDPTRTRYILSELARFPNFRFWYVRIW 102

The following BLAST results are available for this feature:

BLAST of Carg02085 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015974.1	2.9e-53	100.00	hypothetical protein SDJN02_21078, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578410.1	2.9e-53	100.00	Peptidyl-prolyl cis-trans isomerase FKBP20-1, partial [Cucurbita argyrosperma su...	[more]

BLAST of Carg02085 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02085 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02085 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02085-RA	Carg02085-RA	mRNA