Carg01942 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01942
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 8468623 .. 8469088 (-)
RNA-Seq ExpressionCarg01942
SyntenyCarg01942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAACATTGCTGTAACTGCATGCTCCTTGGTCCTAGTATCATTTGAGGATAATAGTTCGACAAGGAATGGAATGGCTCCTGCCTCGGCAATACAGATTCGGTTATCCGAATTCCTCTTTGCTAGTAACCGGAGCTCACCTGTAGCTGATCTTTTCTGTTCTGGAGATCCATTTACCAGTTTTACCAGTAAGGCATCGATGGCCGCCCGATTGCAGTCTGAAATACTGTTTCCAGGTTTCTTATTTACACAGCTACCTTGCTTGCTTGGCAGTTCAACGCCATTGTTATCACACCACAAAGCAATCAGGCTCTTCAAAACGTAATTTGGGGTTAAGGCTGTACGGACTAAAACCTGCTGAGATTTTGGACAGGTTATGTGCCCTGAATCCAACCATTTCTGAATGCAGGATCTCTCATAAGTCTGCAAAAGGTAACAAAACAGTCTATGAACGAGCATAACAATG

mRNA sequence

ATTCAACATTGCTGTAACTGCATGCTCCTTGGTCCTAGTATCATTTGAGGATAATAGTTCGACAAGGAATGGAATGGCTCCTGCCTCGGCAATACAGATTCGGTTATCCGAATTCCTCTTTGCTAGTAACCGGAGCTCACCTGTAGCTGATCTTTTCTGTTCTGGAGATCCATTTACCAGTTTTACCATTCAACGCCATTGTTATCACACCACAAAGCAATCAGGCTCTTCAAAACGTAATTTGGGGTTAAGGCTGTACGGACTAAAACCTGCTGAGATTTTGGACAGGTTATGTGCCCTGAATCCAACCATTTCTGAATGCAGGATCTCTCATAAGTCTGCAAAAGGTAACAAAACAGTCTATGAACGAGCATAACAATG

Coding sequence (CDS)

ATGGCTCCTGCCTCGGCAATACAGATTCGGTTATCCGAATTCCTCTTTGCTAGTAACCGGAGCTCACCTGTAGCTGATCTTTTCTGTTCTGGAGATCCATTTACCAGTTTTACCATTCAACGCCATTGTTATCACACCACAAAGCAATCAGGCTCTTCAAAACGTAATTTGGGGTTAAGGCTGTACGGACTAAAACCTGCTGAGATTTTGGACAGGTTATGTGCCCTGAATCCAACCATTTCTGAATGCAGGATCTCTCATAAGTCTGCAAAAGGTAACAAAACAGTCTATGAACGAGCATAA

Protein sequence

MAPASAIQIRLSEFLFASNRSSPVADLFCSGDPFTSFTIQRHCYHTTKQSGSSKRNLGLRLYGLKPAEILDRLCALNPTISECRISHKSAKGNKTVYERA
Homology
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BLAST of Carg01942 vs. NCBI nr
Match: KAG7031979.1 (hypothetical protein SDJN02_06021 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAPASAIQIRLSEFLFASNRSSPVADLFCSGDPFTSFTIQRHCYHTTKQSGSSKRNLGLR 60
           MAPASAIQIRLSEFLFASNRSSPVADLFCSGDPFTSFTIQRHCYHTTKQSGSSKRNLGLR
Sbjct: 1   MAPASAIQIRLSEFLFASNRSSPVADLFCSGDPFTSFTIQRHCYHTTKQSGSSKRNLGLR 60

Query: 61  LYGLKPAEILDRLCALNPTISECRISHKSAKGNKTVYERA 101
           LYGLKPAEILDRLCALNPTISECRISHKSAKGNKTVYERA
Sbjct: 61  LYGLKPAEILDRLCALNPTISECRISHKSAKGNKTVYERA 100

The following BLAST results are available for this feature:
BLAST of Carg01942 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031979.15.5e-49100.00hypothetical protein SDJN02_06021 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg01942 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01942 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01942 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01942-RACarg01942-RAmRNA