Carg01759 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01759
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9452354 .. 9452902 (-)
RNA-Seq ExpressionCarg01759
SyntenyCarg01759
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTACAGAAGAAGCTTCAATGGCGCCAAAAACTCTCCGAGGATCGCATGGAATGTTTTCAGGGACGATCGTCTTCTTAGACAAAAACGGCTTGCAGGTACGCATATTGCAGGCTTATCTTTCTCTGCAGCCTTGTATTTCAATGAATTAGGGCAATTTCTACACTATTTCAGAAGGTTCTCTCGTACCAGTGGCTGGGAAGACGGCTTAAGATCAGGGGAGAAGGCGTCAGAGGATTTATACACTGTAAAAGCAGGTTAGATGAAGATGGAAGAGACTAAGCCCCGACCGTGTATTTCCTAGAAACTGAAATTGTCTTCTAACAATTCGGAAGCAGTAAGTTCTGAAAGGGTTGGAGATTCAAATGCTTCAAACTTGGTAACGAAGACTGCTACAGGTCTTGGGGACTTCAAATTAATAGCAATGTAAGTTTCTTTGGTACCCAATTCATAGCTTGATGTTGGAATGTGTTTGTCTTGTATAAGTTGTGATCATGTTCTTCCTTAACTGGATCCCTAATTCAGATTTATATCTATAATGAAAAATTCC

mRNA sequence

TCGTACAGAAGAAGCTTCAATGGCGCCAAAAACTCTCCGAGGATCGCATGGAATGTTTTCAGGGACGATCGTCTTCTTAGACAAAAACGGCTTGCAGAAGGTTCTCTCGTACCAGTGGCTGGGAAGACGGCTTAAGATCAGGGGAGAAGGCGTCAGAGGATTTATACACTGTAAAAGCAGGTTAGATGAAGATGGAAGAGACTAAGCCCCGACCGTGTATTTCCTAGAAACTGAAATTGTCTTCTAACAATTCGGAAGCAGTAAGTTCTGAAAGGGTTGGAGATTCAAATGCTTCAAACTTGGTAACGAAGACTGCTACAGGTCTTGGGGACTTCAAATTAATAGCAATGTAAGTTTCTTTGGTACCCAATTCATAGCTTGATGTTGGAATGTGTTTGTCTTGTATAAGTTGTGATCATGTTCTTCCTTAACTGGATCCCTAATTCAGATTTATATCTATAATGAAAAATTCC

Coding sequence (CDS)

ATGGCGCCAAAAACTCTCCGAGGATCGCATGGAATGTTTTCAGGGACGATCGTCTTCTTAGACAAAAACGGCTTGCAGAAGGTTCTCTCGTACCAGTGGCTGGGAAGACGGCTTAAGATCAGGGGAGAAGGCGTCAGAGGATTTATACACTGTAAAAGCAGGTTAGATGAAGATGGAAGAGACTAA

Protein sequence

MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHCKSRLDEDGRD
Homology
[Close]
BLAST of Carg01759 vs. NCBI nr
Match: KAG7032159.1 (hypothetical protein SDJN02_06202 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHCKSRLDEDGR 60
          MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHCKSRLDEDGR
Sbjct: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHCKSRLDEDGR 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of Carg01759 vs. NCBI nr
Match: KAG6601379.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHCKS 54
          MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIH  S
Sbjct: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSYQWLGRRLKIRGEGVRGFIHLSS 53

[Close]
BLAST of Carg01759 vs. NCBI nr
Match: KAG6601374.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 7.8e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQKVLSY 32
          MAPKTLRGSHGMFSGTIVFLDKNGLQ  L Y
Sbjct: 1  MAPKTLRGSHGMFSGTIVFLDKNGLQGNLHY 31

The following BLAST results are available for this feature:
BLAST of Carg01759 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032159.13.6e-27100.00hypothetical protein SDJN02_06202 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601379.11.1e-2096.23Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe... [more]
KAG6601374.17.8e-0690.32Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe... [more]
BLAST of Carg01759 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01759 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01759 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01759-RACarg01759-RAmRNA