Carg01196 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01196
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase subunit
Location	Carg_Chr06: 730492 .. 739493 (+)
RNA-Seq Expression	Carg01196
Synteny	Carg01196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAAGCTCTCCTTCCGAAGGGGGTGCCTGCGATTTAGGGGAGGGACATCGCTGTCGATTCTCTCAGTCGCAGCAGAGGATAACGGAAACGAACTGAAAATTTCTGATACTCGAACTCCAATTCCATTCCATTCCACTTGAACAGTCCGGAACTTCGTTTTCAATCTCTTCTTCTTGCTCTAGGGCTTTGTTTTTGCACTTCGATCGCTCGCCATGGATTTGCGGTTCCCCTACTCCCCGGCTGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATACTTAGCCCAGATGAGATTGTAATTCTCTATCCATCCATCACTTCAATTTCGATTACAATGTATTTCGTTTAGTTTGATTCTGTCTCTATGTTGAGAGGTCGATCGGGGATGAGGAATGGTTTACGTTTGTATGAATTAGGTTGCTTTAGGAAGTGGCTCAGCTGGGTTTTTGCTGCCTGTTGGTTTATTGATGTGCAAGTTCTGTTTGTTTTTTTGTTTATAGAGTTGGAGTACTGGATGAACTTCCGGGGTTTTGTATTTTATTAGTTAGGGACCAGGGCCGTGTTCTTTCTTCTTGTTCCTTGTATTTTATTCACTGATGGGTAATGGTTTCTTATTCCTTGAAATGCATAGCTTTTAGTGGACATTTTTGGGTTCTTCTTCTCTCACATTTTAAATTGAAAGTTGGTCTTGAGCTAGAAAGAAACTTATATTATTTTTTAATAAAATTTAAATTATTAAGTTTTATTCCAAATGATGTGTTGTTTTTGTTTTTGAATAATTTGAAATAGGAAATAGGAAATAAGAAACCAGATTGTTTTCGTATGCCAATGTTTCTTTAAATTGAGAAATGGATAATATAATCTGTTACAAAATCCATATGTTGGAAGTGAGAATTTTTTTTACTACACACCTTGGTGTCTAAACCATATTCTTTGGACTTCAGAGGCAAATGTCCGTGGTGCAAATTGAGCATGGTGAAACTACAGAGAGGGGTAAGCCAAAAGTAGGTGGTTTGAGTGACCCGCGGCTTGGTACAATTGACAGAAAAATGAAGTGTGAAACTTGCACTGCGAACATGGCTGAATGCCCTGGACACTTTGGGCACCTCGAGCTTGCCAAGCCAATGTTTCATATTGGATTTATGAAGACTGTGCTCACTATCATGCGTTCTGTTTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGTACTGTTCTTTCTTAATATTATATTTTGATGTTTACTGGATTGGTTTCCTTTTTTGTCCTTCAGCTAAGTATGATTTCACGCTGTACATGTTTTTTTCTTTCTTTTTCTGCTTCCTTGTTGCTATGATTCGTTATGAATGATTCCAGAAGACTGCATAGGATTACCTTGGCTAGGACTTTTATGGTTTTAGACCATGTAATATGTTCGTTATGGTTCTTCTAAGAGCGAAGTGGAAAAGATAACTGGAATGCATCTCTTTAAGATGTTGGGATAATGGGAATTTGGGTCTAAGTTATCATTATCTTATTGATTGATTCTAGCTATTGCATGGAAATAGTCAATTACCTTGAGCAATCCGTTTATCATTTTTCAGGAGGACCCAAAATTTAAACAAGCGATGCGGATAAAGAATCCCAAGAACAGGCTTAAAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAAGGTGGAGATGAAATTGATGTCCAAGGCCAAGATTCAGATCAACCGGTGAAAAGGGGTCGGGGTGGCTGTGGTGCTCAGCAGCCTAAGATCTCAATTGATGGTATGAAAATGGTTGCAGAGTACAAGGCTCAGAGGAAGAAAAATGATGACCAGGAGCAGCTGCCTGAACCTGTGGAAAGAAAACAGACACTTAGTGCCGAAAGGGTGACCAATTTCAATCCTGATTAGCATTATCCTTCGTAATTAATTTTGCATGTACCTCTTTCATGAGGTCAAATGTTGGATGGATTCTTGTAGGTTCTTGGTGTTCTGAAAAGAATAAGCGACGATGATTGCAAACTCTTGGGCCTAAATCCAAAGTATGCTCGACCTGACTCGATGATTCTGCAAGTCCTTCCAATTCCTCCACCTCCTGTGAGACCATCGGTTATGATGGACACCTCATCTAGAAGTGAGGTATGCCTGTTCTGCTTTTGTTTTATGATGTCTAATTGTTTCTTTTTTGTTTACTGCTTCCAATAAAATTCATTTTATTTTTCTACTTAGTTTCTGGGATAGTGTTACGATGCTTTTGACAATATTGGATCAATTTTAACGTGGCATTTCTCAATGCAGGACGATCTAACTCATCAGTTGGCTATGATTATAAGGCACAACGAAAACCTCAGGAGGCAAGAAAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCACAACTACTGCAGTTTCATATAGCCACGTATTTTGATAATGAATTACCTGGACTACCCAGGGTATTGAGTCTCTTTTATTTCTGAAGCTATATGATTTTCTTTTTCCAACCATTTTTCTTCTTACTTTCATATGTTGCTTTAATCAAGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCAGAAACCGTGACACCATATAATATAGAGAGGTCCGTGTTTTAAAATCATTTCTAGCTTCTTGATTCTTTCGCTTTCACAGTATTTATTGTTTGCGAATGGTCTCTTCTTTTGAAAATCAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGCGATCATCATTTGGAGCTTGGGTACAAGGCAAGATTTTCTGATCATGCATGCAATCTGATTTTTGGGTGTTTTATAATTCCTAAATTCCTCATTCTTTTGCTGCTGTGATCATAGGTGGAGCGTCATTTGAACGATGGTGACTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATTATGCCCTACTCAACTTTCCGCCTAAATTTATCTGTCACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGTCACAGTTATATGATTGTTATCTCCTGTCCTTTTAGCGTACAAACATTTTTGTTCGTTGTAAGTTGGGATCTGAAATTGCATCGATAAATTTGTGCAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCGGAGTCTGAATCTGGATTCATTACTCCGGGGGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGTATGCTGCATTAGCTATAGTACTCGACGTGGTCTGTAATCATCATCATCATCATCATCTCTTAAAAAAGTAGTTGCACTTTTTTTTTTTGAACTAATACTAATCGCCATGGTCATAATGCATTTTGAAAAGAACTGTTCCGACTCTTTGTTTGACTAATTGGTGATGTCTTTATCACATTAAAGATGGCGGTTGGTGTTTCAAATGTCATGTTCGTTCATTTGAGTTGCCTAGATTAAGGAGTTAACAGTCTCATAAATTTTTTTTTTACACATGCTTTTCGTTATCGTTTTTATGAAATTGAAGCTCAATCATGTAAATCATTTTCAGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCCACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGCGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGAGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTCGAAACTCACTGGGTGACGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTCGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAGCTACATGTTGCCAGAGCACGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAATGTATTCGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATTGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAACGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCAGTCTATCTAAAACCTGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCGACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACCGAAATGGCTCTTCGGGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACCAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTATGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACTCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTCGCACCCATAGGAACAGGAGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGCCTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCAACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACGTCACCAAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCTCCATCAAGTCCCTATAGCCCAACCTCCCCGAACTACAGGTAGTGGGTTGTTAAAGTATTTTTGGGTTTAAATGTCTTTAGTAGTACGTTCAGGCGTTTGAATATGAACTCTGTTGCATATATGCTTGTTTTCCTGGTTTGTTTCTGTATGCCTTGAAGCTAATAAGTTCGAACTTCTTGTCTTACCTTGCAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCATCAAGCCCAACCTACAGTCCTAGCAGGTGAGCTTTTACTGCCTCCTTTCTCGAGGGCTCACTTTAACATCTATAATTATCATGATTACCTCGCAATTTCCCTAACCCATTATTTGCCTTTTCTCTCTTCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGGTTAGCCGAGATAAACTCTTATAGTCAAAAACATTCTCATCTTTTTTTTTAGTCAGCATCTAATCATTTATATTACTTGCAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGAGGGTTGATATCAAATATCTGGGTTGAAGGAAGAGGTAAAGTTCTTGAAGCCCTGATCTCGTGACGATTAACAAGGCTAACTGGTTCGTTTTGTAATAATTGATCTTCAGGGTGTTTTATATGTGGATTTCTCTTCTGTGTTGCTTGCCATCATTCTGGATCTCGGCTTGGAAAAGGGGCATTGTATCTTTGTAGCCGGATTCAGTATTTCGTTAAAAAGATTGGGTGGGTACATATTATGTTAATAGGGTTGATTATTCCTCTAGGAAGCCTCTTAACTGAGGACAAGAGTGCTAACATTTGAGGTAGCTTCATATAGTCAGAAAGAATTAGAAGGAAGAACAATAGAGTTGACAAAATCAGAGAAGACTGATTTTGGTGTGCAGGTGTTCTAGATATAATTGATGACTGAACGACACAGCTCACGGTAATATAGTTATTTTTGTTTGTGTTGTTTTGACTCTCAAAACTTGCCTTTGTGACGTTCGAACGTTCAAAAAAGTTTCGAAACACGAACCACATTAACCTTTTGCAAGTGATTTCTTAGAACATGTTGTAGTTAATCCTTCATTGTATAATTGTACTGATTGTGCAGGTAATTTGTAAATGTCAGGCCCTCGAAAACCGAGAACGAGCAGAGGCAAAGAAACGACCAAACATTATATGATTTAGATTTCGCAGAGAACAGAACTTGTCTGAAGCTTTGTTTATTTTACTATGAAGAATCTGTGCTGATTATCTTACAATTAGCCCCTCCGTTCCCCTGTATCTTTGTACCTTACCAAATAGCAAATGATTATGTGAAGAAAACTGTAATTTGTTTGACTCAGAAACTGTACTAAGAAATAGGCCCCTCAACTATGTATTAGTTTTTTTTTTTTTTTTTTTTTTTGTATATTGTACTGGTATCAAAT

mRNA sequence

TTTGAAGCTCTCCTTCCGAAGGGGGTGCCTGCGATTTAGGGGAGGGACATCGCTGTCGATTCTCTCAGTCGCAGCAGAGGATAACGGAAACGAACTGAAAATTTCTGATACTCGAACTCCAATTCCATTCCATTCCACTTGAACAGTCCGGAACTTCGTTTTCAATCTCTTCTTCTTGCTCTAGGGCTTTGTTTTTGCACTTCGATCGCTCGCCATGGATTTGCGGTTCCCCTACTCCCCGGCTGAGGTTGCCAAAACTTAGCCCAGATGAGATTAGGCAAATGTCCGTGGTGCAAATTGAGCATGGTGAAACTACAGAGAGGGGTAAGCCAAAAGTAGGTGGTTTGAGTGACCCGCGGCTTGGTACAATTGACAGAAAAATGAAGTGTGAAACTTGCACTGCGAACATGGCTGAATGCCCTGGACACTTTGGGCACCTCGAGCTTGCCAAGCCAATGTTTCATATTGGATTTATGAAGACTGTGCTCACTATCATGCGTTCTGTTTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAGGACCCAAAATTTAAACAAGCGATGCGGATAAAGAATCCCAAGAACAGGCTTAAAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAAGGTGGAGATGAAATTGATGTCCAAGGCCAAGATTCAGATCAACCGGTGAAAAGGGGTCGGGGTGGCTGTGGTGCTCAGCAGCCTAAGATCTCAATTGATGGTATGAAAATGGTTGCAGAGTACAAGGCTCAGAGGAAGAAAAATGATGACCAGGAGCAGCTGCCTGAACCTGTGGAAAGAAAACAGACACTTAGTGCCGAAAGGGTGACCAATTTCAATCCTGATTAGCATTATCCTTCGTAATTAATTTTGCATGTACCTCTTTCATGAGGTCAAATGTTGGATGGATTCTTGTAGGTTCTTGGTGTTCTGAAAAGAATAAGCGACGATGATTGCAAACTCTTGGGCCTAAATCCAAAGTATGCTCGACCTGACTCGATGATTCTGCAAGTCCTTCCAATTCCTCCACCTCCTGTGAGACCATCGGTTATGATGGACACCTCATCTAGAAGTGAGGACGATCTAACTCATCAGTTGGCTATGATTATAAGGCACAACGAAAACCTCAGGAGGCAAGAAAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCACAACTACTGCAGTTTCATATAGCCACGTATTTTGATAATGAATTACCTGGACTACCCAGGGTATTGAGTCTCTTTTATTTCTGAAGCTATATGATTTTCTTTTTCCAACCATTTTTCTTCTTACTTTCATATGTTGCTTTAATCAAGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCAGAAACCGTGACACCATATAATATAGAGAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGCGATCATCATTTGGAGCTTGGGTACAAGGTGGAGCGTCATTTGAACGATGGTGACTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATTATGCCCTACTCAACTTTCCGCCTAAATTTATCTGTCACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCGGAGTCTGAATCTGGATTCATTACTCCGGGGGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCCACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGCGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGAGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTCGAAACTCACTGGGTGACGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTCGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAGCTACATGTTGCCAGAGCACGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAATGTATTCGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATTGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAACGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCAGTCTATCTAAAACCTGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCGACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACCGAAATGGCTCTTCGGGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACCAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTATGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACTCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTCGCACCCATAGGAACAGGAGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGCCTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCAACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACGTCACCAAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCTCCATCAAGTCCCTATAGCCCAACCTCCCCGAACTACAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCATCAAGCCCAACCTACAGTCCTAGCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGAGGGTTGATATCAAATATCTGGGTTGAAGGAAGAGGGTGTTTTATATGTGGATTTCTCTTCTGTGTTGCTTGCCATCATTCTGGATCTCGGCTTGGAAAAGGGGCATTGTATCTTTGTAGCCGGATTCAGTATTTCGTTAAAAAGATTGGGTGGGTACATATTATGTTAATAGGGTTGATTATTCCTCTAGGAAGCCTCTTAACTGAGGACAAGAGTGCTAACATTTGAGGTAGCTTCATATAGTCAGAAAGAATTAGAAGGAAGAACAATAGAGTTGACAAAATCAGAGAAGACTGATTTTGGTGTGCAGGTGTTCTAGATATAATTGATGACTGAACGACACAGCTCACGGTAATATAGTTATTTTTGTTTGTGTTGTTTTGACTCTCAAAACTTGCCTTTGTGACGTTCGAACGTTCAAAAAAGTTTCGAAACACGAACCACATTAACCTTTTGCAAGTGATTTCTTAGAACATGTTGTAGTTAATCCTTCATTGTATAATTGTACTGATTGTGCAGGTAATTTGTAAATGTCAGGCCCTCGAAAACCGAGAACGAGCAGAGGCAAAGAAACGACCAAACATTATATGATTTAGATTTCGCAGAGAACAGAACTTGTCTGAAGCTTTGTTTATTTTACTATGAAGAATCTGTGCTGATTATCTTACAATTAGCCCCTCCGTTCCCCTGTATCTTTGTACCTTACCAAATAGCAAATGATTATGTGAAGAAAACTGTAATTTGTTTGACTCAGAAACTGTACTAAGAAATAGGCCCCTCAACTATGTATTAGTTTTTTTTTTTTTTTTTTTTTTTGTATATTGTACTGGTATCAAAT

Coding sequence (CDS)

ATGATTTTCTTTTTCCAACCATTTTTCTTCTTACTTTCATATGTTGCTTTAATCAAGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCAGAAACCGTGACACCATATAATATAGAGAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGCGATCATCATTTGGAGCTTGGGTACAAGGTGGAGCGTCATTTGAACGATGGTGACTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATTATGCCCTACTCAACTTTCCGCCTAAATTTATCTGTCACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCGGAGTCTGAATCTGGATTCATTACTCCGGGGGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCCACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGCGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGAGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTCGAAACTCACTGGGTGACGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTCGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAGCTACATGTTGCCAGAGCACGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAATGTATTCGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATTGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAACGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCAGTCTATCTAAAACCTGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCGACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACCGAAATGGCTCTTCGGGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACCAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTATGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACTCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTCGCACCCATAGGAACAGGAGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGCCTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCAACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACGTCACCAAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCTCCATCAAGTCCCTATAGCCCAACCTCCCCGAACTACAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCATCAAGCCCAACCTACAGTCCTAGCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGA

Protein sequence

MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR

Homology

[Close]

BLAST of Carg01196 vs. NCBI nr
Match: KAG7027808.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 3003.0 bits (7784), Expect = 0.0e+00
Identity = 1550/1550 (100.00%), Postives = 1550/1550 (100.00%), Query Frame = 0


Query: 1    MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 60
            MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 1    MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 60

Query: 61   PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 120
            PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ
Sbjct: 61   PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 120

Query: 121  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 180
            RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN
Sbjct: 121  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 180

Query: 181  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 240
            LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC
Sbjct: 181  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 240

Query: 241  RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT 300
            RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT
Sbjct: 241  RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT 300

Query: 301  SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 360
            SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL
Sbjct: 301  SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 360

Query: 361  GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP 420
            GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP
Sbjct: 361  GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP 420

Query: 421  GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 480
            GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG
Sbjct: 421  GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 480

Query: 481  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 540
            QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 481  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 540

Query: 541  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL 600
            TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL
Sbjct: 541  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL 600

Query: 601  KMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE 660
            KMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE
Sbjct: 601  KMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE 660

Query: 661  IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP 720
            IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP
Sbjct: 661  IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP 720

Query: 721  LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 780
            LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG
Sbjct: 721  LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 780

Query: 781  CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN 840
            CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN
Sbjct: 781  CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN 840

Query: 841  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK 900
            KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK
Sbjct: 841  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK 900

Query: 901  ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA 960
            ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA
Sbjct: 901  ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA 960

Query: 961  PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW 1020
            PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW
Sbjct: 961  PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW 1020

Query: 1021 MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN 1080
            MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN
Sbjct: 1021 MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN 1080

Query: 1081 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV 1140
            YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV
Sbjct: 1081 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV 1140

Query: 1141 TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG 1200
            TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG
Sbjct: 1141 TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG 1200

Query: 1201 MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 1260
            MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY
Sbjct: 1201 MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 1260

Query: 1261 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1320
            SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1261 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1320

Query: 1321 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1380
            PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1321 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1380

Query: 1381 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA 1440
            PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA
Sbjct: 1381 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA 1440

Query: 1441 KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS 1500
            KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS
Sbjct: 1441 KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS 1500

Query: 1501 PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1501 PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1550

[Close]

BLAST of Carg01196 vs. NCBI nr
Match: XP_023540733.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2983.4 bits (7733), Expect = 0.0e+00
Identity = 1542/1550 (99.48%), Postives = 1543/1550 (99.55%), Query Frame = 0


Query: 1    MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 60
            MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT
Sbjct: 1    MIFFFQPFFFLLSYVALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 60

Query: 61   PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 120
            PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ
Sbjct: 61   PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 120

Query: 121  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 180
            RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN
Sbjct: 121  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 180

Query: 181  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 240
            LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC
Sbjct: 181  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 240

Query: 241  RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT 300
            RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT
Sbjct: 241  RKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRT 300

Query: 301  SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 360
            SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL
Sbjct: 301  SAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 360

Query: 361  GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP 420
            GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP
Sbjct: 361  GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP 420

Query: 421  GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 480
            GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG
Sbjct: 421  GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 480

Query: 481  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 540
            QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 481  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 540

Query: 541  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL 600
            TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL
Sbjct: 541  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL 600

Query: 601  KMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE 660
            KMKKKEFERIFRYEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE
Sbjct: 601  KMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE 660

Query: 661  IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP 720
            IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP
Sbjct: 661  IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP 720

Query: 721  LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 780
            LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG
Sbjct: 721  LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 780

Query: 781  CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN 840
            CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN
Sbjct: 781  CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN 840

Query: 841  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK 900
            KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK
Sbjct: 841  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK 900

Query: 901  ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA 960
            ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA
Sbjct: 901  ISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA 960

Query: 961  PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW 1020
            PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW
Sbjct: 961  PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEW 1020

Query: 1021 MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN 1080
            MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN
Sbjct: 1021 MLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN 1080

Query: 1081 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV 1140
            YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV
Sbjct: 1081 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGV 1140

Query: 1141 TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG 1200
            TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG
Sbjct: 1141 TENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEG 1200

Query: 1201 MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 1260
            MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY
Sbjct: 1201 MMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 1260

Query: 1261 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1320
            SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSYSPTS
Sbjct: 1261 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSYSPTS 1320

Query: 1321 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1380
            PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1321 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1380

Query: 1381 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA 1440
            PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA
Sbjct: 1381 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSA 1440

Query: 1441 KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS 1500
            KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS
Sbjct: 1441 KYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGAS 1500

Query: 1501 PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1501 PDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1543

[Close]

BLAST of Carg01196 vs. NCBI nr
Match: XP_022928584.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata] >XP_022928634.1 DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata])

HSP 1 Score: 2971.0 bits (7701), Expect = 0.0e+00
Identity = 1532/1534 (99.87%), Postives = 1533/1534 (99.93%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD
Sbjct: 561  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1701 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1760

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY
Sbjct: 1761 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1820

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1821 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

[Close]

BLAST of Carg01196 vs. NCBI nr
Match: XP_022971615.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima] >XP_022971616.1 DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima])

HSP 1 Score: 2966.0 bits (7688), Expect = 0.0e+00
Identity = 1530/1534 (99.74%), Postives = 1532/1534 (99.87%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD
Sbjct: 561  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGED LSVEAQKNATLFFNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDLLSVEAQKNATLFFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1701 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1760

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY
Sbjct: 1761 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1820

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1821 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

[Close]

BLAST of Carg01196 vs. NCBI nr
Match: XP_023540732.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2959.1 bits (7670), Expect = 0.0e+00
Identity = 1530/1548 (98.84%), Postives = 1533/1548 (99.03%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD
Sbjct: 561  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPA--------------YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPA              YSPTSP+YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 1456
            SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 1760

Query: 1457 SPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPD 1516
            SPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPD
Sbjct: 1761 SPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPD 1820

Query: 1517 YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1821 YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1868

[Close]

BLAST of Carg01196 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 2651.7 bits (6872), Expect = 0.0e+00
Identity = 1361/1530 (88.95%), Postives = 1441/1530 (94.18%), Query Frame = 0


Query: 19   KATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL 78
            +ATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL
Sbjct: 324  RATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL 383

Query: 79   NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 138
            NLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD HLELG
Sbjct: 384  NLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELG 443

Query: 139  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 198
            YKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNM
Sbjct: 444  YKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNM 503

Query: 199  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNI 258
            HVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFI KDVFMN 
Sbjct: 504  HVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNT 563

Query: 259  LMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGDTF 318
            LMWWEDFDGKVPAPAILKP+PLWTGKQVFNLIIPKQINL R SAWH+++E+GFITPGDT 
Sbjct: 564  LMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQ 623

Query: 319  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 378
            VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPDAARKFLGHTQWLVNYWLLQN F+I
Sbjct: 624  VRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTI 683

Query: 379  GIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNK 438
            GIGDTIAD++TMEKINETIS AK  VK+LI++ Q + L+PEPGRTM D+FEN+VNQVLNK
Sbjct: 684  GIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNK 743

Query: 439  ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTL 498
            ARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTL
Sbjct: 744  ARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTL 803

Query: 499  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 558
            PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA
Sbjct: 804  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 863

Query: 559  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDE 618
            MEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+R F+YE +DE
Sbjct: 864  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDE 923

Query: 619  NWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRL 678
            NW P+Y+  EH+EDLK IRE R+VF+AE  KLE DR+QLGTEIAT G+++WP+PVN+KR 
Sbjct: 924  NWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRH 983

Query: 679  IQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 738
            I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VVPG+D LSVEAQKNATLFFNILLR
Sbjct: 984  IWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLR 1043

Query: 739  STFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 798
            ST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT
Sbjct: 1044 STLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103

Query: 799  FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTL 858
            FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL PEA+K+KE AKTVQCALEYTTL
Sbjct: 1104 FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTL 1163

Query: 859  RSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDK 918
            RSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+++P+KISPWLLRIELNREMMVDK
Sbjct: 1164 RSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDK 1223

Query: 919  KLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKK 978
            KLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIMNDE PKGEL DESAEDDVFLKK
Sbjct: 1224 KLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKK 1283

Query: 979  IESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDV 1038
            IESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK   EWMLDTEGVNLLAV+CHEDV
Sbjct: 1284 IESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDV 1343

Query: 1039 DARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1098
            D +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM
Sbjct: 1344 DPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1403

Query: 1099 AITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCA 1158
            AITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD LRGVTENIMLGQLAPIGTG C 
Sbjct: 1404 AITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCE 1463

Query: 1159 LYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPIS 1218
            LYLNDEMLKNAIELQLPSY+DGLEFGMTP+RSP+SGTPYHEGMMSP+YLLSPN+RLSP+S
Sbjct: 1464 LYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMS 1523

Query: 1219 DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1278
            DAQFSPYVGGMAFSP+       SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS
Sbjct: 1524 DAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1583

Query: 1279 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1338
            PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1584 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1643

Query: 1339 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1398
            PTSPAYSPTSPAYSPTSPA       YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
Sbjct: 1644 PTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1703

Query: 1399 SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPS 1458
            SYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNPQSAKYSPS AYSPS+ RLSP+
Sbjct: 1704 SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPA 1763

Query: 1459 SPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGYSP 1518
            SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY++GASPD       YSPSAGYSP
Sbjct: 1764 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD-------YSPSAGYSP 1823

Query: 1519 TAPGYSPSSTSQYTSQTTDKDDRSRKDDRS 1549
            T PGYSPSST QYT    DK D++ K D S
Sbjct: 1824 TLPGYSPSSTGQYTPHEGDKKDKTGKKDAS 1832

[Close]

BLAST of Carg01196 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 1775.4 bits (4597), Expect = 0.0e+00
Identity = 952/1464 (65.03%), Postives = 1144/1464 (78.14%), Query Frame = 0


Query: 9    FFLLSYV-----ALIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 68
            F + +YV      L +A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVIT DP
Sbjct: 303  FHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADP 362

Query: 69   TINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 128
             ++ID++GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYIIR+DG R D
Sbjct: 363  NLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYIIREDGTRFD 422

Query: 129  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 188
            LR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPYSTFRLNLSV
Sbjct: 423  LRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSV 482

Query: 189  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 248
            TSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQDTLLG R  
Sbjct: 483  TSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLF 542

Query: 249  TKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAW 308
            TKRD F+ KD+ MNILMW   +DGKVP PAILKP+ LWTGKQ+F+LIIP  INL R ++ 
Sbjct: 543  TKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTST 602

Query: 309  HSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 368
            H++ E    + GDT V IE+GELL+G LCK++LG + GS+IHV+  E G D  R F+  T
Sbjct: 603  HNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQT 662

Query: 369  QWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRT 428
            Q +VN+WL+   F++GIGDTIAD+ATM K+  TIS+AKN+VK LI KAQ +  E +PG++
Sbjct: 663  QTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKS 722

Query: 429  MMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 488
            ++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQM ACVGQQN
Sbjct: 723  VIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQN 782

Query: 489  VEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 548
            VEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV
Sbjct: 783  VEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 842

Query: 549  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMK 608
            KTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+Q +DSL+  
Sbjct: 843  KTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKD 902

Query: 609  KKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIAT 668
              E ER++R++ +  ++   +M P  +E ++     R+  E E +++++DR  L  EI  
Sbjct: 903  NTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIP 962

Query: 669  TGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLS- 728
            +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK++   D    
Sbjct: 963  SGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTED 1022

Query: 729  --------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVA 788
                     E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIES+FLQ+L  
Sbjct: 1023 DENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAH 1082

Query: 789  PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 848
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK++KTPSL++Y
Sbjct: 1083 PGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIY 1142

Query: 849  LKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDE 908
            LKP   +  +RAK V+  LEYTTL +VT ATE++YDPDP +TII ED +FV SY+E+PDE
Sbjct: 1143 LKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDE 1202

Query: 909  EIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIR 968
            EI    +SPWLLRIEL+R M+ DKKL+MA+I + +  +F   L CIF+DDNAEKLILRIR
Sbjct: 1203 EIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIR 1262

Query: 969  IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC-GKVNKFDENEG 1028
            ++  +  KG  ND   +DD FL++IESNML+EM LRGI  I KVF++   K+ K  EN G
Sbjct: 1263 MVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTENGG 1322

Query: 1029 FKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1088
            F    EW+LDT+GV+LL V+ H DVD  RTTSN ++E+I+VLGIEAVR +LL ELR VIS
Sbjct: 1323 FGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVIS 1382

Query: 1089 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1148
            FDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+IL+DAA+++E
Sbjct: 1383 FDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSE 1442

Query: 1149 TDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPIS 1208
            TD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP           PS     
Sbjct: 1443 TDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPE----------PSNVSYP 1502

Query: 1209 GTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1268
             TP   G  +PSY                    G  + +P  +P  +P SP        +
Sbjct: 1503 DTP---GSQTPSY------------------SYGDGSTTPFHNPYDAPLSPFNETFRGDF 1562

Query: 1269 SPT---SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1328
            SP+   SPGY+  +  Y  +S  Y P SPTYSP+SP YSPTSP+YSPTSPSYSPTSPSYS
Sbjct: 1563 SPSAMNSPGYN-ANKSYG-SSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1622

Query: 1329 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1388
            PTSPSYSPTSPSYSPTSP YSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSP
Sbjct: 1623 PTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1682

Query: 1389 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSP 1448
            SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSP+SPSYSP+SPSYSP
Sbjct: 1683 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 1726

Query: 1449 TSPSYNPQSAKYSPSQAYSPSSPR 1455
            +SPSY+P S  ++    Y P++ +
Sbjct: 1743 SSPSYSPSSPTFTNKYNYQPNNKK 1726

[Close]

BLAST of Carg01196 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1774.6 bits (4595), Expect = 0.0e+00
Identity = 965/1585 (60.88%), Postives = 1193/1585 (75.27%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +A Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++ID++GVP SI
Sbjct: 325  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 384

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            A N+T+ E VTP+NI+RL+ELV  G    P   GAKYIIRD+G R+DLR+  K SD HL+
Sbjct: 385  AANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKYIIRDNGDRIDLRFHPKPSDLHLQ 444

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
             GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 445  TGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 504

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+ +   M
Sbjct: 505  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 564

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESG----FI 316
            N+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP  IN  RT + H + E       I
Sbjct: 565  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI 624

Query: 317  TPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 376
            +PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 625  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLL 684

Query: 377  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV 436
                +IGIGD+IAD+ T + I  TI  AK +V  +I+KA    LEP PG T+  +FEN+V
Sbjct: 685  IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 744

Query: 437  NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 496
            N++LN ARD  GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 745  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 804

Query: 497  FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 556
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 805  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 864

Query: 557  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFR 616
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK   K FE+ FR
Sbjct: 865  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 924

Query: 617  YEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP 676
            +++ +E      +  + V+D+ +    +N  E E +++  DR  L   I  TG++   +P
Sbjct: 925  FDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLP 984

Query: 677  VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF 736
             NL R+I NAQK F I+ R  SD+HP+++VE + +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 985  CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1044

Query: 737  FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 796
            FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPAT
Sbjct: 1045 FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPAT 1104

Query: 797  QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 856
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+V+L  ++ +  ERAK + C 
Sbjct: 1105 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCR 1164

Query: 857  LEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNR 916
            LE+TTLR VT  T ++YDP+P ST++ ED ++V  YYEMPD ++A  +ISPWLLR+EL+R
Sbjct: 1165 LEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDR 1224

Query: 917  EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDE---S 976
            + M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL+LRIRIMN +  K +  +E    
Sbjct: 1225 KHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDK 1284

Query: 977  AEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK-----FDENEGFKPEMEWMLDT 1036
             +DDVFL+ IESNMLT+M L+GI  I+KV++   + +        E+  FK   EW+L+T
Sbjct: 1285 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1344

Query: 1037 EGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1096
            +GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR++L  EL  VISFDGSYVNYRHL
Sbjct: 1345 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 1404

Query: 1097 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENI 1156
            A+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA + E+D ++GV+ENI
Sbjct: 1405 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1464

Query: 1157 MLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLE--------FGMTPSRSPISG-- 1216
            MLGQLAP GTG   L L+ E  K  +E  +P+ I GL         FG  P  SP+ G  
Sbjct: 1465 MLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGLGAAGPTGMFFGSAP--SPMGGIS 1524

Query: 1217 ---TPYHEGM------------------------------------MSPSYLLSPNLRLS 1276
               TP+++G                                      SP++  +P    S
Sbjct: 1525 PAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGS 1584

Query: 1277 PISDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 1336
            P   + + P  GG           A+ P S  GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1585 PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1644

Query: 1337 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1396
             YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1645 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1704

Query: 1397 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1456
            TSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+
Sbjct: 1705 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPN 1764

Query: 1457 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP- 1516
            Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYSPTSPSYSPTSPSY+P S +Y+P 
Sbjct: 1765 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1824

Query: 1517 SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDY 1528
            S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP Y+P+SP YSP+SP  +  SP Y
Sbjct: 1825 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1884

[Close]

BLAST of Carg01196 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 1774.6 bits (4595), Expect = 0.0e+00
Identity = 965/1585 (60.88%), Postives = 1193/1585 (75.27%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +A Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++ID++GVP SI
Sbjct: 325  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 384

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            A N+T+ E VTP+NI+RL+ELV  G    P   GAKYIIRD+G R+DLR+  K SD HL+
Sbjct: 385  AANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKYIIRDNGDRIDLRFHPKPSDLHLQ 444

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
             GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 445  TGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 504

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+ +   M
Sbjct: 505  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 564

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESG----FI 316
            N+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP  IN  RT + H + E       I
Sbjct: 565  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI 624

Query: 317  TPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 376
            +PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 625  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLL 684

Query: 377  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV 436
                +IGIGD+IAD+ T + I  TI  AK +V  +I+KA    LEP PG T+  +FEN+V
Sbjct: 685  IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 744

Query: 437  NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 496
            N++LN ARD  GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 745  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 804

Query: 497  FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 556
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 805  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 864

Query: 557  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFR 616
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK   K FE+ FR
Sbjct: 865  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 924

Query: 617  YEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP 676
            +++ +E      +  + V+D+ +    +N  E E +++  DR  L   I  TG++   +P
Sbjct: 925  FDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLP 984

Query: 677  VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF 736
             NL R+I NAQK F I+ R  SD+HP+++VE + +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 985  CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1044

Query: 737  FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 796
            FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPAT
Sbjct: 1045 FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPAT 1104

Query: 797  QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 856
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+V+L  ++ +  ERAK + C 
Sbjct: 1105 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCR 1164

Query: 857  LEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNR 916
            LE+TTLR VT  T ++YDP+P ST++ ED ++V  YYEMPD ++A  +ISPWLLR+EL+R
Sbjct: 1165 LEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDR 1224

Query: 917  EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDE---S 976
            + M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL+LRIRIMN +  K +  +E    
Sbjct: 1225 KHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDK 1284

Query: 977  AEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK-----FDENEGFKPEMEWMLDT 1036
             +DDVFL+ IESNMLT+M L+GI  I+KV++   + +        E+  FK   EW+L+T
Sbjct: 1285 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1344

Query: 1037 EGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1096
            +GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR++L  EL  VISFDGSYVNYRHL
Sbjct: 1345 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 1404

Query: 1097 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENI 1156
            A+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA + E+D ++GV+ENI
Sbjct: 1405 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1464

Query: 1157 MLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLE--------FGMTPSRSPISG-- 1216
            MLGQLAP GTG   L L+ E  K  +E  +P+ I GL         FG  P  SP+ G  
Sbjct: 1465 MLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGLGAAGPTGMFFGSAP--SPMGGIS 1524

Query: 1217 ---TPYHEGM------------------------------------MSPSYLLSPNLRLS 1276
               TP+++G                                      SP++  +P    S
Sbjct: 1525 PAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGS 1584

Query: 1277 PISDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 1336
            P   + + P  GG           A+ P S  GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1585 PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1644

Query: 1337 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1396
             YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1645 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1704

Query: 1397 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1456
            TSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+
Sbjct: 1705 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPN 1764

Query: 1457 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP- 1516
            Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYSPTSPSYSPTSPSY+P S +Y+P 
Sbjct: 1765 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1824

Query: 1517 SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDY 1528
            S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP Y+P+SP YSP+SP  +  SP Y
Sbjct: 1825 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1884

[Close]

BLAST of Carg01196 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1772.7 bits (4590), Expect = 0.0e+00
Identity = 964/1585 (60.82%), Postives = 1192/1585 (75.21%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +A Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++ID++GVP SI
Sbjct: 325  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 384

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            A N+T+ E VTP+NI+RL+ELV  G    P   GAKYIIRD+G R+DLR+  K SD HL+
Sbjct: 385  AANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKYIIRDNGDRIDLRFHPKPSDLHLQ 444

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
             GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 445  TGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 504

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+ +   M
Sbjct: 505  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 564

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESG----FI 316
            N+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP  IN  RT + H + E       I
Sbjct: 565  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI 624

Query: 317  TPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 376
            +PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 625  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLL 684

Query: 377  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV 436
                +IGIGD+IAD+ T + I  TI  AK +V  +I+KA    LEP PG T+  +FEN+V
Sbjct: 685  IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 744

Query: 437  NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 496
            N++LN ARD  GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 745  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 804

Query: 497  FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 556
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 805  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 864

Query: 557  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFR 616
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK   K FE+ FR
Sbjct: 865  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 924

Query: 617  YEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP 676
            +++ +E      +  + V+D+ +    +N  E E +++  DR  L   I  TG++   +P
Sbjct: 925  FDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLP 984

Query: 677  VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF 736
             NL R+I NAQK F I+ R  SD+HP+++VE + +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 985  CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1044

Query: 737  FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 796
            FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPAT
Sbjct: 1045 FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPAT 1104

Query: 797  QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 856
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+V+L  ++ +  ERAK + C 
Sbjct: 1105 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCR 1164

Query: 857  LEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNR 916
            LE+TTLR VT  T ++YDP+P ST++ ED ++V  YYEMPD ++A  +ISPWLLR+EL+R
Sbjct: 1165 LEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDR 1224

Query: 917  EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDE---S 976
            + M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL+LRIRIMN +  K +  +E    
Sbjct: 1225 KHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDK 1284

Query: 977  AEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK-----FDENEGFKPEMEWMLDT 1036
             +DDVFL+ IESNMLT+M L+GI  I+KV++   + +        E+  FK   EW+L+T
Sbjct: 1285 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1344

Query: 1037 EGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1096
            +GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR++L  EL  VISFDGSYVNYRHL
Sbjct: 1345 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 1404

Query: 1097 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENI 1156
            A+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA + E+D ++GV+ENI
Sbjct: 1405 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1464

Query: 1157 MLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLE--------FGMTPSRSPISG-- 1216
            MLGQLAP GTG   L L+ E  K  +E  +P+ I GL         FG  P  SP+ G  
Sbjct: 1465 MLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGLGAAGPTGMFFGSAP--SPMGGIS 1524

Query: 1217 ---TPYHEGM------------------------------------MSPSYLLSPNLRLS 1276
               TP+++G                                      SP++  +P    S
Sbjct: 1525 PAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGS 1584

Query: 1277 PISDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 1336
            P   + + P  GG           A+ P S  GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1585 PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1644

Query: 1337 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1396
             YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1645 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1704

Query: 1397 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1456
            TSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+
Sbjct: 1705 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPN 1764

Query: 1457 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP- 1516
            Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYSPTSPSYSPTSPSY+P S +Y+P 
Sbjct: 1765 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1824

Query: 1517 SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDY 1528
            S  Y+PSSP  SPSSP YSP SP Y+PTSPSYSP+SP Y+P+SP YSP+SP  +  SP Y
Sbjct: 1825 SPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1884

[Close]

BLAST of Carg01196 vs. ExPASy TrEMBL
Match: A0A6J1ELE9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435248 PE=3 SV=1)

HSP 1 Score: 2971.0 bits (7701), Expect = 0.0e+00
Identity = 1532/1534 (99.87%), Postives = 1533/1534 (99.93%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD
Sbjct: 561  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1701 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1760

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY
Sbjct: 1761 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1820

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1821 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

[Close]

BLAST of Carg01196 vs. ExPASy TrEMBL
Match: A0A6J1I682 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470290 PE=3 SV=1)

HSP 1 Score: 2966.0 bits (7688), Expect = 0.0e+00
Identity = 1530/1534 (99.74%), Postives = 1532/1534 (99.87%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD
Sbjct: 561  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGED LSVEAQKNATLFFNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDLLSVEAQKNATLFFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1701 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1760

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY
Sbjct: 1761 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1820

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
Sbjct: 1821 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

[Close]

BLAST of Carg01196 vs. ExPASy TrEMBL
Match: A0A5D3CJC8 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00440 PE=3 SV=1)

HSP 1 Score: 2947.1 bits (7639), Expect = 0.0e+00
Identity = 1515/1534 (98.76%), Postives = 1528/1534 (99.61%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 356  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 415

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 416  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 475

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 476  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 535

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 536  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 595

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQINL+RTSAWHSESE+G +TPGD
Sbjct: 596  NILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGD 655

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 656  TFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 715

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL
Sbjct: 716  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 775

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 776  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 835

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 836  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 895

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 896  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFE 955

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK
Sbjct: 956  DENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 1015

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL
Sbjct: 1016 RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1075

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1076 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1135

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1136 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1195

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV
Sbjct: 1196 TLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 1255

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFL
Sbjct: 1256 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFL 1315

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAV+CHE
Sbjct: 1316 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHE 1375

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1376 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1435

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1436 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1495

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTPYHEGMMSP+YLLSPNLRLSP
Sbjct: 1496 CALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSP 1555

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1556 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1615

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1616 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1676 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1736 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1795

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTG SPDYSPSSPQYSPSAGY
Sbjct: 1796 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGY 1855

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYT QT+DKDDRSRKDDR+NR
Sbjct: 1856 SPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNNR 1889

[Close]

BLAST of Carg01196 vs. ExPASy TrEMBL
Match: A0A5A7UGR7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00420 PE=3 SV=1)

HSP 1 Score: 2941.4 bits (7624), Expect = 0.0e+00
Identity = 1515/1538 (98.50%), Postives = 1528/1538 (99.35%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 356  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 415

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 416  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 475

Query: 137  LGYK----VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 196
            LGYK    VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD
Sbjct: 476  LGYKARFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 535

Query: 197  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITK 256
            GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITK
Sbjct: 536  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITK 595

Query: 257  DVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFI 316
            DVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQINL+RTSAWHSESE+G +
Sbjct: 596  DVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHV 655

Query: 317  TPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 376
            TPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL
Sbjct: 656  TPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 715

Query: 377  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV 436
            QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV
Sbjct: 716  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKV 775

Query: 437  NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 496
            NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG
Sbjct: 776  NQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 835

Query: 497  FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 556
            FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ
Sbjct: 836  FIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 895

Query: 557  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFR 616
            RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKKEFERIFR
Sbjct: 896  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFR 955

Query: 617  YEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP 676
            YEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP
Sbjct: 956  YEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMP 1015

Query: 677  VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF 736
            VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF
Sbjct: 1016 VNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLF 1075

Query: 737  FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 796
            FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT
Sbjct: 1076 FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1135

Query: 797  QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 856
            QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA
Sbjct: 1136 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCA 1195

Query: 857  LEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNR 916
            LEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEIAPEKISPWLLRIELNR
Sbjct: 1196 LEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNR 1255

Query: 917  EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAED 976
            EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL DESAED
Sbjct: 1256 EMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAED 1315

Query: 977  DVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAV 1036
            DVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAV
Sbjct: 1316 DVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAV 1375

Query: 1037 ICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMT 1096
            +CHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMT
Sbjct: 1376 MCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMT 1435

Query: 1097 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPI 1156
            YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPI
Sbjct: 1436 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPI 1495

Query: 1157 GTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNL 1216
            GTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTPYHEGMMSP+YLLSPNL
Sbjct: 1496 GTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNL 1555

Query: 1217 RLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP 1276
            RLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP
Sbjct: 1556 RLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP 1615

Query: 1277 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1336
            GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1616 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1675

Query: 1337 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1396
            TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1676 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1735

Query: 1397 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSS 1456
            YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSS
Sbjct: 1736 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSS 1795

Query: 1457 PRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSP 1516
            PRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTG SPDYSPSSPQYSP
Sbjct: 1796 PRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSP 1855

Query: 1517 SAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SAGYSPTAPGYSPSSTSQYT QT+DKDDRSRKDDR+NR
Sbjct: 1856 SAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNNR 1893

[Close]

BLAST of Carg01196 vs. ExPASy TrEMBL
Match: A0A6J1CV04 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014830 PE=3 SV=1)

HSP 1 Score: 2933.3 bits (7603), Expect = 0.0e+00
Identity = 1507/1534 (98.24%), Postives = 1526/1534 (99.48%), Query Frame = 0


Query: 17   LIKATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 76
            L +ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI
Sbjct: 321  LPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 380

Query: 77   ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 136
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE
Sbjct: 381  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 440

Query: 137  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 196
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 441  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 500

Query: 197  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 256
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM
Sbjct: 501  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 560

Query: 257  NILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGD 316
            NILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQINL+RTSAWH+ESE+GFITPGD
Sbjct: 561  NILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHAESETGFITPGD 620

Query: 317  TFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 376
            TFVRIEKGEL+SGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 621  TFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 680

Query: 377  SIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVL 436
            SIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSLEPEPGRTMM+SFENKVNQVL
Sbjct: 681  SIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSLEPEPGRTMMESFENKVNQVL 740

Query: 437  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 496
            NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR
Sbjct: 741  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDR 800

Query: 497  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 556
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 801  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 860

Query: 557  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFE 616
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKKEFERIFRYEFE
Sbjct: 861  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFE 920

Query: 617  DENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLK 676
            DENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADR+QLGTEIATTGENSWPMPVNLK
Sbjct: 921  DENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQLGTEIATTGENSWPMPVNLK 980

Query: 677  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 736
            RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATL FNIL
Sbjct: 981  RLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLLFNIL 1040

Query: 737  LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 796
            LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL
Sbjct: 1041 LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1100

Query: 797  NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 856
            NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT
Sbjct: 1101 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYT 1160

Query: 857  TLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMV 916
            TLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI+P+KISPWLLRIELNREMMV
Sbjct: 1161 TLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEISPDKISPWLLRIELNREMMV 1220

Query: 917  DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFL 976
            DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFL
Sbjct: 1221 DKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFL 1280

Query: 977  KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHE 1036
            KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKPEMEWMLDTEGVNLLAVICHE
Sbjct: 1281 KKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKPEMEWMLDTEGVNLLAVICHE 1340

Query: 1037 DVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1096
            DVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH
Sbjct: 1341 DVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1400

Query: 1097 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1156
            LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG
Sbjct: 1401 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGG 1460

Query: 1157 CALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1216
            CALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP
Sbjct: 1461 CALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSP 1520

Query: 1217 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1276
            ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP
Sbjct: 1521 ISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1580

Query: 1277 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1336
            TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1581 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 1337 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1396
            YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1641 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 1397 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1456
            SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS
Sbjct: 1701 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLS 1760

Query: 1457 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGY 1516
            PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTG SP++SPSSPQYSPSAGY
Sbjct: 1761 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPEFSPSSPQYSPSAGY 1820

Query: 1517 SPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1551
            SPTAPGYSPSSTSQYT QT++KDDRSRKDDRSNR
Sbjct: 1821 SPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSNR 1854

[Close]

BLAST of Carg01196 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 2651.7 bits (6872), Expect = 0.0e+00
Identity = 1361/1530 (88.95%), Postives = 1441/1530 (94.18%), Query Frame = 0


Query: 19   KATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL 78
            +ATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL
Sbjct: 324  RATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIAL 383

Query: 79   NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 138
            NLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD HLELG
Sbjct: 384  NLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELG 443

Query: 139  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 198
            YKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNM
Sbjct: 444  YKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNM 503

Query: 199  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNI 258
            HVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFI KDVFMN 
Sbjct: 504  HVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNT 563

Query: 259  LMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGDTF 318
            LMWWEDFDGKVPAPAILKP+PLWTGKQVFNLIIPKQINL R SAWH+++E+GFITPGDT 
Sbjct: 564  LMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQ 623

Query: 319  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 378
            VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPDAARKFLGHTQWLVNYWLLQN F+I
Sbjct: 624  VRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTI 683

Query: 379  GIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNK 438
            GIGDTIAD++TMEKINETIS AK  VK+LI++ Q + L+PEPGRTM D+FEN+VNQVLNK
Sbjct: 684  GIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNK 743

Query: 439  ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTL 498
            ARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTL
Sbjct: 744  ARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTL 803

Query: 499  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 558
            PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA
Sbjct: 804  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 863

Query: 559  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDE 618
            MEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKK EF+R F+YE +DE
Sbjct: 864  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDE 923

Query: 619  NWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRL 678
            NW P+Y+  EH+EDLK IRE R+VF+AE  KLE DR+QLGTEIAT G+++WP+PVN+KR 
Sbjct: 924  NWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRH 983

Query: 679  IQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 738
            I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VVPG+D LSVEAQKNATLFFNILLR
Sbjct: 984  IWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLR 1043

Query: 739  STFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 798
            ST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT
Sbjct: 1044 STLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103

Query: 799  FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTL 858
            FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL PEA+K+KE AKTVQCALEYTTL
Sbjct: 1104 FHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTL 1163

Query: 859  RSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDK 918
            RSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+++P+KISPWLLRIELNREMMVDK
Sbjct: 1164 RSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDK 1223

Query: 919  KLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKK 978
            KLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIMNDE PKGEL DESAEDDVFLKK
Sbjct: 1224 KLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKK 1283

Query: 979  IESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDV 1038
            IESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK   EWMLDTEGVNLLAV+CHEDV
Sbjct: 1284 IESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDV 1343

Query: 1039 DARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1098
            D +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM
Sbjct: 1344 DPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1403

Query: 1099 AITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCA 1158
            AITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD LRGVTENIMLGQLAPIGTG C 
Sbjct: 1404 AITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCE 1463

Query: 1159 LYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPIS 1218
            LYLNDEMLKNAIELQLPSY+DGLEFGMTP+RSP+SGTPYHEGMMSP+YLLSPN+RLSP+S
Sbjct: 1464 LYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMS 1523

Query: 1219 DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1278
            DAQFSPYVGGMAFSP+       SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS
Sbjct: 1524 DAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1583

Query: 1279 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1338
            PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1584 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1643

Query: 1339 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1398
            PTSPAYSPTSPAYSPTSPA       YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
Sbjct: 1644 PTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1703

Query: 1399 SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPS 1458
            SYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNPQSAKYSPS AYSPS+ RLSP+
Sbjct: 1704 SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPA 1763

Query: 1459 SPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGYSP 1518
            SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY++GASPD       YSPSAGYSP
Sbjct: 1764 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD-------YSPSAGYSP 1823

Query: 1519 TAPGYSPSSTSQYTSQTTDKDDRSRKDDRS 1549
            T PGYSPSST QYT    DK D++ K D S
Sbjct: 1824 TLPGYSPSSTGQYTPHEGDKKDKTGKKDAS 1832

[Close]

BLAST of Carg01196 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 600.1 bits (1546), Expect = 5.0e-171
Identity = 401/1148 (34.93%), Postives = 584/1148 (50.87%), Query Frame = 0


Query: 22   QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 81
            Q    P+  I  RLK K GR R NL GKRV+F+ RTVI+PDP + I E+G+P  +A  LT
Sbjct: 333  QPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILT 392

Query: 82   YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL--RYLKKSSDHHLELGY 141
            +PE V+ +NIE+L++ V  GP+  PG    +Y    DG    L   Y K+ +D  L +G 
Sbjct: 393  FPECVSRHNIEKLRQCVRNGPNKYPGARNVRY---PDGSSRTLVGDYRKRIAD-ELAIGC 452

Query: 142  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 201
             V+RHL +GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMH
Sbjct: 453  IVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 512

Query: 202  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNIL 261
            VPQ+ E R E + LM V   + +P++   ++   QD L     IT++DTF  +  F  I 
Sbjct: 513  VPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLIC 572

Query: 262  MWWEDFDGKV--PAPAILKPQPLWTGKQVFNLI------IPKQINLSRTSAWHSESESGF 321
             +  D    +  P P ILKP  LWTGKQ+F+++      I   + L+       + E GF
Sbjct: 573  SYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGF 632

Query: 322  ---ITPGDTFVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLV 381
               +   D +V     EL+SG L K TLG  +   L  ++  +    AA   +     L 
Sbjct: 633  DETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLS 692

Query: 382  NYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDS 441
              W+  + FSIGI D        ++  ++I    ++    I++    +L+ + G     S
Sbjct: 693  ARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKS 752

Query: 442  FENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 501
             E ++  +LN  R+  G +    L   N+   M   GSKGS INISQM ACVGQQ V G 
Sbjct: 753  LEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGH 812

Query: 502  RIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 561
            R P GFIDR+LPHF +    P ++GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ 
Sbjct: 813  RAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAS 872

Query: 562  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEF 621
            TGY+ RRL+KA+ED++V YD TVRN+ G ++QF YG+DGMD   +E +    L      F
Sbjct: 873  TGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPL-----NF 932

Query: 622  ERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGEN 681
             R+F    + +   P    P       +  E    FE E+  +  D+ ++ T+       
Sbjct: 933  NRLF---LKVQATCP----PRSHHTYLSSEELSQKFEEEL--VRHDKSRVCTD------- 992

Query: 682  SWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQK 741
                                              V+++ +    L V     P       
Sbjct: 993  --------------------------------AFVKSLREFVSLLGVKSASPP------- 1052

Query: 742  NATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 801
                   +L +++  + + L+ +          +     R+ +  +  G  IG + AQSI
Sbjct: 1053 ------QVLYKASGVTDKQLEVF----------VKICVFRYREKKIEAGTAIGTIGAQSI 1112

Query: 802  GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAK 861
            GEP TQMTL TFH+AGV++ N+T GVPR+ EIIN +K I TP +S  L+     T   A+
Sbjct: 1113 GEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTS--AR 1172

Query: 862  TVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLR 921
             V+  +E TTL  V ++ EV       S  I  D   +         E A   I+PW ++
Sbjct: 1173 WVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKII---------EEACLSITPWSVK 1232

Query: 922  IELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELND 981
              + +   +           K+N   D+D                IR+++       + D
Sbjct: 1233 NSILKTPRI-----------KLN---DND----------------IRVLDTGLDITPVVD 1292

Query: 982  ESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGV 1041
            +S     F      N+L  + + GI  + +V +        D+++    + +W L  EG 
Sbjct: 1293 KSRAH--FNLHNLKNVLPNIIVNGIKTVERVVV----AEDMDKSKQIDGKTKWKLFVEGT 1352

Query: 1042 NLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAIL 1101
            NLLAV+    ++ R TTSN+++EV + LGIEA R +++DE+  V+   G  ++ RH+ +L
Sbjct: 1353 NLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLL 1353

Query: 1102 CDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLG 1156
             D MTYRG ++ I R GI + D   +M+ SFE T D L  AA   + D++ GVTE +++G
Sbjct: 1413 ADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMG 1353

[Close]

BLAST of Carg01196 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 578.9 bits (1491), Expect = 1.2e-164
Identity = 402/1165 (34.51%), Postives = 580/1165 (49.79%), Query Frame = 0


Query: 22   QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 81
            Q    P+  I  RLK K GR R NL GKRV+F+ RTVI+PDP + I E+G+P  +A  LT
Sbjct: 343  QPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILT 402

Query: 82   YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL--RYLKKSSDHHLELGY 141
            +PE V+ +NIE+L++ V  GP+  PG    +Y    DG    L   Y K+ +D  L +G 
Sbjct: 403  FPECVSRHNIEKLRQCVRNGPNKYPGARNVRY---PDGSSRTLVGDYRKRIAD-ELAIGC 462

Query: 142  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 201
             V+RHL +GD VLFNRQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMH
Sbjct: 463  IVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 522

Query: 202  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNIL 261
            VPQ+ E R E + LM V   + +P++   ++   QD L     IT++DTF  +  F  I 
Sbjct: 523  VPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLIC 582

Query: 262  MWWEDFDGKV--PAPAILKPQPLWTGKQVFNLI------IPKQINLSRTSAWHSESESGF 321
             +  D    +  P P ILKP  LWTGKQ+F+++      I   + L+       + E GF
Sbjct: 583  SYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGF 642

Query: 322  ---ITPGDTFVRIEKGELLSGTLCKKTLGT--------STGSLIHVIWEEVGPDAARKFL 381
               +   D +V     EL+SG L K TL          +   L  ++  +    AA   +
Sbjct: 643  DETMCINDGWVYFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCM 702

Query: 382  GHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEP 441
                 L   W+  + FSIGI D        ++  ++I    ++    I++    +L+ + 
Sbjct: 703  NRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKA 762

Query: 442  GRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 501
            G     S E ++  +LN  R+  G +    L   N+   M   GSKGS INISQM ACVG
Sbjct: 763  GLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVG 822

Query: 502  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 561
            QQ V G R P GFIDR+LPHF +    P ++GFV NS+  GLT  EFFFH MGGREGL+D
Sbjct: 823  QQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVD 882

Query: 562  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSL 621
            TAVKT+ TGY+ RRL+KA+ED++V YD TVRN+ G ++QF YG+DGMD   +E +    L
Sbjct: 883  TAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPL 942

Query: 622  KMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTE 681
                  F R+F    + +   P    P       +  E    FE E+  +  D+ ++ T+
Sbjct: 943  -----NFNRLF---LKVQATCP----PRSHHTYLSSEELSQKFEEEL--VRHDKSRVCTD 1002

Query: 682  IATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDP 741
                                                     V+++ +    L V     P
Sbjct: 1003 ---------------------------------------AFVKSLREFVSLLGVKSASPP 1062

Query: 742  LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIG 801
                          +L +++  + + L+ +          +     R+ +  +  G  IG
Sbjct: 1063 -------------QVLYKASGVTDKQLEVF----------VKICVFRYREKKIEAGTAIG 1122

Query: 802  CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEAN 861
             + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+ EIIN +K I TP +S  L+    
Sbjct: 1123 TIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELENPLE 1182

Query: 862  KTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEK 921
             T   A+ V+  +E TTL  V ++ EV       S  I  D   +         E A   
Sbjct: 1183 LTS--ARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKII---------EEACLS 1242

Query: 922  ISPWLL--------RIELNRE--MMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLI 981
            I+PW +        RI+LN     ++D  L +  + +K            FN  N + ++
Sbjct: 1243 ITPWSVKNSILKTPRIKLNDNDIRVLDTGLDITPVVDKSRAH--------FNLHNLKNVL 1302

Query: 982  LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE 1041
              I I+N                  +K +E  ++ E       D++K+  K         
Sbjct: 1303 PNI-IVNG-----------------IKTVERVVVAE-------DMDKMLAKL-------- 1362

Query: 1042 NEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRV 1101
                 P   W       NLLAV+    ++ R TTSN+++EV + LGIEA R +++DE+  
Sbjct: 1363 ---IIPCPRWAC----TNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGT 1368

Query: 1102 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1156
            V+   G  ++ RH+ +L D MTYRG ++ I R GI + D   +M+ SFE T D L  AA 
Sbjct: 1423 VMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAA 1368

[Close]

BLAST of Carg01196 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 426.4 bits (1095), Expect = 9.8e-119
Identity = 376/1354 (27.77%), Postives = 577/1354 (42.61%), Query Frame = 0


Query: 20   ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALN 79
            AT +S R    IC  L+ KEG  R  +MGKRV+ + R+VI+PDP I ++++G+P   AL 
Sbjct: 415  ATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALK 474

Query: 80   LTYPETVTPYNIERLKELVEYGPHPPPGKT-------GAKYIIRDDGQRLDLRYLKKSSD 139
            LTYPE VTP+N+E+L+E +  GP   PG T         K    +  +R   R L  S  
Sbjct: 475  LTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRG 534

Query: 140  HHLEL---------GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLS 199
               EL         G  V RH+ DGD VL NRQP+LHK S+M H+++++    T RL+ +
Sbjct: 535  ATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYA 594

Query: 200  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 259
              S YNADFDGDEMN+H PQ   +RAE   ++        P +  P+  ++QD ++    
Sbjct: 595  NCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVL 654

Query: 260  ITKRDTFITKDVFMNIL-------MWWEDFDGK---------------VPAPAILKPQPL 319
            +TKRDTF+ KD F  +L       M    F G+                  PAILKP PL
Sbjct: 655  LTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPL 714

Query: 320  WTGKQVFNLIIPK----------------QINLSRTSAWHSESESGFITP---------- 379
            WTGKQV   ++ +                 ++  +  +   +  SG +T           
Sbjct: 715  WTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQ 774

Query: 380  --GDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 439
               +  + I K E + G + K     +   L+H + E  G +AA   L     L   +L 
Sbjct: 775  NLNEDKLHIRKNEFVCGVIDKAQF--ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQ 834

Query: 440  QNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKA----QERSLEPEPGRTMMD-- 499
             + F+ G+ D I      E+  + +   +N  + +++K      +  ++P+  R+ ++  
Sbjct: 835  THGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERI 894

Query: 500  --------------SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFIN 559
                          S  N +NQ  +K   +D  S         N +  M  +G+KGS +N
Sbjct: 895  LYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVN 954

Query: 560  ISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 619
              Q+++ +GQQ++EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH 
Sbjct: 955  FQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHC 1014

Query: 620  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 679
            M GREGL+DTAVKTS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D   
Sbjct: 1015 MAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD--- 1074

Query: 680  IESQKLDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLE 739
                              + R  F                 ++  +E     +  +QK  
Sbjct: 1075 ------------------VHRSSF-----------------IEKFKELTINQDMVLQKCS 1134

Query: 740  ADRYQLGTEIATTGENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 799
             D          +G +S+   +P++LK+    A+K                 VEA+  + 
Sbjct: 1135 ED--------MLSGASSYISDLPISLKK---GAEK----------------FVEAM-PMN 1194

Query: 800  ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 859
            ER+                             ASK V  E  L           ++S+F 
Sbjct: 1195 ERI-----------------------------ASKFVRQEELLKL---------VKSKFF 1254

Query: 860  QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKT 919
             SL  PGE +G +AAQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKT
Sbjct: 1255 ASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKT 1314

Query: 920  PSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV--------------------- 979
            P ++  L     KTKE A  +   L   T+  + ++ E+                     
Sbjct: 1315 PIMTCPLL--KGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKIN 1374

Query: 980  WYDPD--PMST-IIEEDMDFVKSYYEMPDEEIAPEKISPWLLRI--------------EL 1039
             Y P+  P  T I EED +       +   E A E     L RI              E 
Sbjct: 1375 LYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNET 1434

Query: 1040 NREMMVDKKLS---------------MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1099
            + +  V  K +               + + A+K   +  D++    N ++       I  
Sbjct: 1435 DNDDSVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISG 1494

Query: 1100 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDI-------NKVFIKC-GKVNK 1156
            + D     E  D     +   +  E +M  +  ++G+ ++        + F++     + 
Sbjct: 1495 VEDPEMDSENEDTEVSKEDTPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKSDRHI 1554

[Close]

BLAST of Carg01196 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-48
Identity = 166/591 (28.09%), Postives = 265/591 (44.84%), Query Frame = 0


Query: 46  LMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 105
           L+GKR D + RTV+  DP++ ++E+G+P SIA  L   E +   N ERL  +  + P   
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL--VTSFVPTLL 372

Query: 106 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 165
             K    ++ R D        L     + L+ G K+ R L DGD VL NR PS+H+ S++
Sbjct: 373 DNK--EMHVRRGD-------RLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLI 432

Query: 166 GHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 225
              ++I+P  S   LN     P+  DFDGD ++ +VPQS + + E+ EL+ + K +++ Q
Sbjct: 433 AMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQ 492

Query: 226 SNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILK-----PQP 285
           + R ++ + QD+L     +            M  L  +  F  ++P PAI+K      +P
Sbjct: 493 NGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPF--QLPPPAIIKASPSSTEP 552

Query: 286 LWTGKQVFNLIIPKQINLS--RTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLG 345
            WTG Q+F ++ P   + +    +   S  E    + G  ++R   GE   G   ++ L 
Sbjct: 553 QWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLR--DGE---GNFIERLLK 612

Query: 346 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI--ADAATMEKINE 405
              G ++ +I+               Q +++ WLL    S+ + D    +D  + + + E
Sbjct: 613 HDKGKVLDIIYS-------------AQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTE 672

Query: 406 TISAAKNEVKNLIKKAQ--------------ERSLEPEPGRTMMDSFENKVNQVLNK--- 465
            IS    E + +  K Q              E   E          +E + +  L++   
Sbjct: 673 EISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAV 732

Query: 466 -----ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 525
                A  D  + A +   +SN+   M  AGSKG+   + Q + C+G QN     + FGF
Sbjct: 733 SAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSLSFGF 792

Query: 526 ---------IDRTLP--------HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 585
                     D   P          T + Y P   G +ENS+L GL P E F H++  R+
Sbjct: 793 PRELTCAAWNDPNSPLRGAKGKDSTTTESYVP--YGVIENSFLTGLNPLESFVHSVTSRD 852

Query: 586 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 587
                +      G + RRL+  M DI   YDGTVRNS G+ ++QF Y  DG
Sbjct: 853 S--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG 867

The following BLAST results are available for this feature:

BLAST of Carg01196 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027808.1	0.0e+00	100.00	DNA-directed RNA polymerase II subunit 1 [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023540733.1	0.0e+00	99.48	DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_022928584.1	0.0e+00	99.87	DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata] >XP_022928634.1 DN...	[more]
XP_022971615.1	0.0e+00	99.74	DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima] >XP_022971616.1 DNA-...	[more]
XP_023540732.1	0.0e+00	98.84	DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita pepo subsp. ...	[more]

BLAST of Carg01196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P18616	0.0e+00	88.95	DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
P35084	0.0e+00	65.03	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]
P11414	0.0e+00	60.88	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=PO...	[more]
P08775	0.0e+00	60.88	DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a P...	[more]
P24928	0.0e+00	60.82	DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE...	[more]

BLAST of Carg01196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELE9	0.0e+00	99.87	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143524...	[more]
A0A6J1I682	0.0e+00	99.74	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470290 ...	[more]
A0A5D3CJC8	0.0e+00	98.76	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UGR7	0.0e+00	98.50	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1CV04	0.0e+00	98.24	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110148...	[more]

BLAST of Carg01196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35800.1	0.0e+00	88.95	RNA polymerase II large subunit	[more]
AT5G60040.1	5.0e-171	34.93	nuclear RNA polymerase C1	[more]
AT5G60040.2	1.2e-164	34.51	nuclear RNA polymerase C1	[more]
AT3G57660.1	9.8e-119	27.77	nuclear RNA polymerase A1	[more]
AT1G63020.1	4.1e-48	28.09	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 390..417
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 1265..1286 score: 35.45 coord: 1236..1252 score: 29.41 coord: 1303..1320 score: 30.0 coord: 1321..1346 score: 33.08 coord: 1286..1302 score: 35.29
None	No IPR available	GENE3D	1.10.150.390		coord: 1113..1156 e-value: 2.2E-21 score: 77.5
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 80..142 e-value: 4.1E-27 score: 96.4
None	No IPR available	GENE3D	6.20.50.80		coord: 560..610 e-value: 5.3E-15 score: 56.6
None	No IPR available	GENE3D	6.10.250.2940		coord: 501..559 e-value: 6.1E-34 score: 117.3
None	No IPR available	GENE3D	2.40.40.20		coord: 36..216 e-value: 1.1E-47 score: 163.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1234..1455
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1536..1550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1468..1535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1234..1550
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 19..1256
None	No IPR available	PANTHER	PTHR19376:SF56	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 19..1256
None	No IPR available	CDD	cd02584	RNAP_II_Rpb1_C	coord: 750..1162 e-value: 0.0 score: 780.234
None	No IPR available	CDD	cd02733	RNAP_II_RPB1_N	coord: 17..567 e-value: 0.0 score: 1210.45
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 17..1165
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..244 e-value: 7.1E-129 score: 444.1
IPR007075	RNA polymerase Rpb1, domain 6	PFAM	PF04992	RNA_pol_Rpb1_6	coord: 587..771 e-value: 2.5E-64 score: 216.6
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 220..377 e-value: 2.1E-58 score: 198.3
IPR038593	RNA polymerase Rpb1, domain 7 superfamily	GENE3D	3.30.1360.140		coord: 856..991 e-value: 6.5E-55 score: 186.8
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 220..383 e-value: 2.1E-49 score: 167.5
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 410..514 e-value: 7.0E-39 score: 132.1
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PFAM	PF05001	RNA_pol_Rpb1_R	coord: 1232..1246 e-value: 0.96 score: 9.9 coord: 1331..1344 e-value: 0.089 score: 13.2 coord: 1247..1260 e-value: 0.11 score: 12.9 coord: 1462..1475 e-value: 0.14 score: 12.6 coord: 1345..1358 e-value: 0.0062 score: 16.8 coord: 1401..1414 e-value: 0.0023 score: 18.2 coord: 1303..1316 e-value: 0.45 score: 11.0 coord: 1289..1302 e-value: 0.031 score: 14.6 coord: 1373..1386 e-value: 0.43 score: 11.0 coord: 1359..1372 e-value: 0.44 score: 11.0 coord: 1415..1428 e-value: 0.34 score: 11.4 coord: 1476..1489 e-value: 0.16 score: 12.4 coord: 1275..1288 e-value: 1.0 score: 9.9 coord: 1261..1274 e-value: 0.0025 score: 18.1 coord: 1429..1442 e-value: 1.1 score: 9.7 coord: 1387..1400 e-value: 0.41 score: 11.1 coord: 1317..1330 e-value: 0.44 score: 11.0
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1386..1392
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1372..1378
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1461..1467
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1414..1420
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1302..1308
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1309..1315
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1421..1427
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1482..1488
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1379..1385
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1316..1322
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1475..1481
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1365..1371
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1400..1406
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1323..1329
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1468..1474
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 521..1111 e-value: 1.1E-104 score: 350.1
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 48..216 e-value: 1.7E-71 score: 239.8
IPR007073	RNA polymerase Rpb1, domain 7	PFAM	PF04990	RNA_pol_Rpb1_7	coord: 856..990 e-value: 1.5E-53 score: 180.4
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 382..500 e-value: 2.8E-47 score: 161.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01196-RA	Carg01196-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity